Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001395.1

Orthogroup ID

OG0002729

Physical Location & Seq

Genomic Coordinates Reverse (-)

6710 .. 10383

Gene Structure 3674 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001395.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

atgaaggaggtgatgttcaccttttggctaggtagctctttttcccatgctcaatacatttcttcctctggtccagatgaaggaggtacgccacaaatcacaggaaagattgttattgccattcaaatagttggtgagggggaagctgttcatccacgagtttgttggcactgtcataaacaagatgttctggttgttggggttgggaagtgtgttctacgaattgatactactaaagttgcaaagggtgaagtccctactgctgaggttcctattaagtgtcctgttgaaaagctcattgatggggtccaatttgttggtaaacaggatggagtggtgacagatttatcaatgtgccaatggatgaccacctggctggtttctgcttctatggatggaactgcatatgctgaacttcttgaggaagaagcaatagatattccagcatggtttacttttgcttctaaagatggaattaatgtggtaacaagcaaaccaatagtgatataccccaacagtggtgagacctatgatggtcagagcaagcaatgggtgccatcgagtgggcgggttgatgaagagtttgcagaaatagtcatagcgaagtggcgtgaggctggggcttccctgtttggaggctgctgcagaacaactccaaataccataagggcaatatctaaggctctttctaataagtcttttgcagttaacgacgcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000932 GO:0000956 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0007186 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009892 GO:0009933 GO:0009965 GO:0009987 GO:0010014 GO:0010015 GO:0010016 GO:0010033 GO:0010071 GO:0010072 GO:0010154 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0022414 GO:0022622 GO:0023052 GO:0031086 GO:0031087 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0046983 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048532 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0090304 GO:0090305 GO:0090421 GO:0097159 GO:0099402 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1905392 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

Ge1_WD40

Protein Analysis

239

Amino Acids

25.89

Weight (kDa)

5.15

Isoelectric Point (pI)

29.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002729)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22740
fragaria_vesca	FvH4_4g00800 FvH4_4g00800 FvH4_4g00800
malus_domestica	MD00G1181400.v1.1
prunus_persica	Prupe.1G018900_v2.0.a1 Prupe.1G018900_v2.0.a1 Prupe.1G018900_v2.0.a1
pyrus_communis	pycom13g17110
rosa_chinensis	RchiOBHm_Chr4g0386691 RchiOBHm_Chr4g0386711 RchiOBHm_Chr4g0386841 RchiOBHm_Chr4g0386961 RchiOBHm_Chr4g0386981 RchiOBHm_Chr4g0387271 RchiOBHm_Chr4g0387331 RchiOBHm_Chr4g0387351 RchiOBHm_Chr4g0387451 RchiOBHm_Chr7g0204331
rosa_multiflora	Rmu_sc0000013.1_g000020 Rmu_sc0000013.1_g000025 Rmu_sc0001317.1_g000013 Rmu_sc0001395.1_g000003 Rmu_sc0001942.1_g000050 Rmu_sc0006571.1_g000023 Rmu_sc0006648.1_g000005 Rmu_sc0027325.1_g000001
rosa_roxburghii	Rroxscaffold_5G00334040 Rroxscaffold_5G00334070
rosa_rugosa	Rorug03G0308800 Rorug03G0309400 Rorug03G0323000
rosa_samantha	Rh1DG032500 Rh4AG015400 Rh4DG011100
rosa_wichuraiana	Rw4G000880 Rw4G000920 Rw4G000950 Rw4G001260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	553
AccB7I	CCANNNNNTGG	1 cut(s)	563
AciI	CCGC	1 cut(s)	568
AfaI	GTAC	1 cut(s)	88
AfiI	CCNNNNNNNGG	3 cut(s)	80, 518, 563
AgsI	TTSAA	2 cut(s)	125, 290
AjnI	CCWGG	1 cut(s)	371
AloI	GAACNNNNNNTCC	1 cut(s)	31
AluBI	AGCT	3 cut(s)	36, 146, 295
AluI	AGCT	3 cut(s)	36, 146, 295
Alw26I	GTCTC	1 cut(s)	518
ApeKI	GCWGC	2 cut(s)	639, 642
AseI	ATTAAT	1 cut(s)	477
Asp700I	GAANNNNTTC	1 cut(s)	147
AspS9I	GGNCC	2 cut(s)	71, 307
AsuHPI	GGTGA	6 cut(s)	10, 22, 146, 260, 349, 533
AvaII	GGWCC	2 cut(s)	71, 307
BanI	GGYRCC	1 cut(s)	553
BauI	CACGAG	1 cut(s)	156
BbvCI	CCTCAGC	1 cut(s)	264
BbvI	GCAGC	2 cut(s)	626, 629
BccI	CCATC	6 cut(s)	296, 323, 389, 464, 527, 565
BciT130I	CCWGG	1 cut(s)	373
BcoDI	GTCTC	1 cut(s)	518
BfaI	CTAG	1 cut(s)	29
BfmI	CTRYAG	1 cut(s)	643
BisI	GCNGC	2 cut(s)	640, 643
BlsI	GCNGC	2 cut(s)	641, 644
Bme1390I	CCNGG	1 cut(s)	373
Bme18I	GGWCC	2 cut(s)	71, 307
BmgT120I	GGNCC	2 cut(s)	71, 307
BmiI	GGNNCC	3 cut(s)	270, 308, 555
BmrFI	CCNGG	1 cut(s)	373
Bpu10I	CCTNAGC	1 cut(s)	264
BpuEI	CTTGAG	1 cut(s)	440
BsaI	GGTCTC	1 cut(s)	518
BsaXI	ACNNNNNCTCC	1 cut(s)	29
Bsc4I	CCNNNNNNNGG	3 cut(s)	80, 518, 563
Bse3DI	GCAATG	1 cut(s)	554
BseBI	CCWGG	1 cut(s)	373
BseGI	GGATG	4 cut(s)	151, 334, 369, 400
BseLI	CCNNNNNNNGG	3 cut(s)	80, 518, 563
BseMI	GCAATG	1 cut(s)	554
BseMII	CTCAG	1 cut(s)	255
BseXI	GCAGC	2 cut(s)	626, 629
BseYI	CCCAGC	1 cut(s)	617
BshNI	GGYRCC	1 cut(s)	553
BslFI	GGGAC	1 cut(s)	239
BslI	CCNNNNNNNGG	3 cut(s)	80, 518, 563
BsmAI	GTCTC	1 cut(s)	518
BsmFI	GGGAC	1 cut(s)	239
Bso31I	GGTCTC	1 cut(s)	518
BspACI	CCGC	1 cut(s)	568
BspCNI	CTCAG	1 cut(s)	256
BspLI	GGNNCC	3 cut(s)	270, 308, 555
BspMAI	CTGCAG	1 cut(s)	647
BspT107I	GGYRCC	1 cut(s)	553
BspTNI	GGTCTC	1 cut(s)	518
BsrDI	GCAATG	1 cut(s)	554
BssSI	CACGAG	1 cut(s)	156
Bst2BI	CACGAG	1 cut(s)	156
Bst2UI	CCWGG	1 cut(s)	373
Bst4CI	ACNGT	2 cut(s)	173, 518
Bst6I	CTCTTC	1 cut(s)	573
BstAPI	GCANNNNNTGC	1 cut(s)	553
BstC8I	GCNNGC	1 cut(s)	545
BstDEI	CTNAG	3 cut(s)	264, 678, 717
BstF5I	GGATG	4 cut(s)	151, 334, 369, 400
BstMAI	GTCTC	1 cut(s)	518
BstMWI	GCNNNNNNNGC	1 cut(s)	553
BstNI	CCWGG	1 cut(s)	373
BstSCI	CCNGG	1 cut(s)	371
BstSFI	CTRYAG	1 cut(s)	643
BstV1I	GCAGC	2 cut(s)	626, 629
BstXI	CCANNNNNNTGG	2 cut(s)	317, 376
BtsCI	GGATG	4 cut(s)	151, 334, 369, 400
BtsIMutI	CAGTG	2 cut(s)	169, 523
Cac8I	GCNNGC	1 cut(s)	545
Cfr13I	GGNCC	2 cut(s)	71, 307
Csp6I	GTAC	1 cut(s)	87
CviAII	CATG	2 cut(s)	47, 447
CviJI	RGCY	9 cut(s)	28, 36, 146, 295, 376, 617, 623, 639, 683
CviKI_1	RGCY	9 cut(s)	28, 36, 146, 295, 376, 617, 623, 639, 683
CviQI	GTAC	1 cut(s)	87
DdeI	CTNAG	3 cut(s)	264, 678, 717
Eam1104I	CTCTTC	1 cut(s)	573
EarI	CTCTTC	1 cut(s)	573
Eco31I	GGTCTC	1 cut(s)	518
Eco47I	GGWCC	2 cut(s)	71, 307
EcoRII	CCWGG	1 cut(s)	371
FaeI	CATG	2 cut(s)	50, 450
FaqI	GGGAC	1 cut(s)	239
FatI	CATG	2 cut(s)	46, 446
FauI	CCCGC	1 cut(s)	561
FauNDI	CATATG	1 cut(s)	406
Fnu4HI	GCNGC	2 cut(s)	640, 643
FokI	GGATG	4 cut(s)	138, 341, 376, 407
Fsp4HI	GCNGC	2 cut(s)	640, 643
FspBI	CTAG	1 cut(s)	29
GluI	GCNGC	2 cut(s)	640, 643
GsaI	CCCAGC	1 cut(s)	621
Hin1II	CATG	2 cut(s)	50, 450
HincII	GTYRAC	1 cut(s)	709
HindII	GTYRAC	1 cut(s)	709
HpaI	GTTAAC	1 cut(s)	709
HphI	GGTGA	6 cut(s)	10, 22, 146, 260, 349, 533
Hpy166II	GTNNAC	4 cut(s)	18, 323, 453, 709
Hpy188I	TCNGA	1 cut(s)	540
Hpy188III	TCNNGA	2 cut(s)	74, 419
Hpy8I	GTNNAC	4 cut(s)	18, 323, 453, 709
Hpy99I	CGWCG	1 cut(s)	716
HpyAV	CCTTC	1 cut(s)	74
HpyCH4III	ACNGT	2 cut(s)	173, 518
HpyCH4V	TGCA	5 cut(s)	242, 404, 587, 645, 704
HpyF10VI	GCNNNNNNNGC	1 cut(s)	553
HpyF3I	CTNAG	3 cut(s)	264, 678, 717
Hsp92II	CATG	2 cut(s)	50, 450
KspAI	GTTAAC	1 cut(s)	709
Lsp1109I	GCAGC	2 cut(s)	626, 629
MaeI	CTAG	1 cut(s)	29
MaeIII	GTNAC	2 cut(s)	337, 484
MboII	GAAGA	3 cut(s)	54, 437, 590
MluCI	AATT	3 cut(s)	222, 311, 474
MnlI	CCTC	7 cut(s)	76, 77, 130, 259, 415, 607, 629
MroXI	GAANNNNTTC	1 cut(s)	147
MseI	TTAA	3 cut(s)	276, 477, 708
MspR9I	CCNGG	1 cut(s)	373
MvaI	CCWGG	1 cut(s)	373
MwoI	GCNNNNNNNGC	1 cut(s)	553
NdeI	CATATG	1 cut(s)	406
NlaIII	CATG	2 cut(s)	50, 450
NlaIV	GGNNCC	3 cut(s)	270, 308, 555
NmuCI	GTSAC	1 cut(s)	337
PdmI	GAANNNNTTC	1 cut(s)	147
PflMI	CCANNNNNTGG	1 cut(s)	563
PkrI	GCNGC	2 cut(s)	641, 644
PshBI	ATTAAT	1 cut(s)	477
Psp6I	CCWGG	1 cut(s)	371
PspFI	CCCAGC	1 cut(s)	617
PspGI	CCWGG	1 cut(s)	371
PspN4I	GGNNCC	3 cut(s)	270, 308, 555
PspPI	GGNCC	2 cut(s)	71, 307
PstI	CTGCAG	1 cut(s)	647
RsaI	GTAC	1 cut(s)	88
RsaNI	GTAC	1 cut(s)	87
SaqAI	TTAA	3 cut(s)	276, 477, 708
SatI	GCNGC	2 cut(s)	640, 643
Sau96I	GGNCC	2 cut(s)	71, 307
ScrFI	CCNGG	1 cut(s)	373
SfcI	CTRYAG	1 cut(s)	643
SinI	GGWCC	2 cut(s)	71, 307
SmlI	CTYRAG	1 cut(s)	419
SmoI	CTYRAG	1 cut(s)	419
Sse9I	AATT	3 cut(s)	222, 311, 474
SsiI	CCGC	1 cut(s)	568
SspMI	CTAG	1 cut(s)	29
StyD4I	CCNGG	1 cut(s)	371
TaaI	ACNGT	2 cut(s)	173, 518
TaqI	TCGA	1 cut(s)	560
TasI	AATT	3 cut(s)	222, 311, 474
Tru1I	TTAA	3 cut(s)	276, 477, 708
Tru9I	TTAA	3 cut(s)	276, 477, 708
TscAI	CASTG	2 cut(s)	176, 523
TseFI	GTSAC	1 cut(s)	337
TseI	GCWGC	2 cut(s)	639, 642
Tsp45I	GTSAC	1 cut(s)	337
TspDTI	ATGAA	4 cut(s)	17, 93, 140, 591
TspRI	CASTG	2 cut(s)	176, 523
Van91I	CCANNNNNTGG	1 cut(s)	563
VpaK11BI	GGWCC	2 cut(s)	71, 307
VspI	ATTAAT	1 cut(s)	477
XcmI	CCANNNNNNNNNTGG	1 cut(s)	162
XmnI	GAANNNNTTC	1 cut(s)	147
XspI	CTAG	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.