Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006571.1

Orthogroup ID

OG0002729

Physical Location & Seq

Genomic Coordinates Reverse (-)

83776 .. 84507

Gene Structure 732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006571.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

atggtgcaggcatatgctgaacttcttgaggaagaagcaatagatattccagcatggtttacttttgcttctaaagatggaattaatgtggtaacaagcaaaccaatagtgatataccccaacagtggtgagacctatgatggtcagagcaagcaatgggtgccattgagtgggcgggttgatgaagagtttgcagaaatagtcatagcgaagtggcgtgaggctggggcttccctgtttggaggctgctgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko01110 map00270 map01100 map01110

Pfam Domains

Protein Families

S-methyl_trans

Protein Analysis

84

Amino Acids

9.24

Weight (kDa)

4.28

Isoelectric Point (pI)

36.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002729)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22740
fragaria_vesca	FvH4_4g00800 FvH4_4g00800 FvH4_4g00800
malus_domestica	MD00G1181400.v1.1
prunus_persica	Prupe.1G018900_v2.0.a1 Prupe.1G018900_v2.0.a1 Prupe.1G018900_v2.0.a1
pyrus_communis	pycom13g17110
rosa_chinensis	RchiOBHm_Chr4g0386691 RchiOBHm_Chr4g0386711 RchiOBHm_Chr4g0386841 RchiOBHm_Chr4g0386961 RchiOBHm_Chr4g0386981 RchiOBHm_Chr4g0387271 RchiOBHm_Chr4g0387331 RchiOBHm_Chr4g0387351 RchiOBHm_Chr4g0387451 RchiOBHm_Chr7g0204331
rosa_multiflora	Rmu_sc0000013.1_g000020 Rmu_sc0000013.1_g000025 Rmu_sc0001317.1_g000013 Rmu_sc0001395.1_g000003 Rmu_sc0001942.1_g000050 Rmu_sc0006571.1_g000023 Rmu_sc0006648.1_g000005 Rmu_sc0027325.1_g000001
rosa_roxburghii	Rroxscaffold_5G00334040 Rroxscaffold_5G00334070
rosa_rugosa	Rorug03G0308800 Rorug03G0309400 Rorug03G0323000
rosa_samantha	Rh1DG032500 Rh4AG015400 Rh4DG011100
rosa_wichuraiana	Rw4G000880 Rw4G000920 Rw4G000950 Rw4G001260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	160
AccB7I	CCANNNNNTGG	1 cut(s)	170
AciI	CCGC	1 cut(s)	175
AfiI	CCNNNNNNNGG	2 cut(s)	125, 170
Alw26I	GTCTC	1 cut(s)	125
ApeKI	GCWGC	2 cut(s)	246, 249
AseI	ATTAAT	1 cut(s)	84
AsuHPI	GGTGA	1 cut(s)	140
BanI	GGYRCC	1 cut(s)	160
BbvI	GCAGC	2 cut(s)	233, 236
BccI	CCATC	2 cut(s)	71, 134
BcoDI	GTCTC	1 cut(s)	125
BisI	GCNGC	2 cut(s)	247, 250
BlsI	GCNGC	2 cut(s)	248, 251
BmiI	GGNNCC	1 cut(s)	162
BpuEI	CTTGAG	1 cut(s)	47
BsaI	GGTCTC	1 cut(s)	125
Bsc4I	CCNNNNNNNGG	2 cut(s)	125, 170
Bse3DI	GCAATG	1 cut(s)	161
BseLI	CCNNNNNNNGG	2 cut(s)	125, 170
BseMI	GCAATG	1 cut(s)	161
BseXI	GCAGC	2 cut(s)	233, 236
BseYI	CCCAGC	1 cut(s)	224
BsgI	GTGCAG	1 cut(s)	26
BshNI	GGYRCC	1 cut(s)	160
BslI	CCNNNNNNNGG	2 cut(s)	125, 170
BsmAI	GTCTC	1 cut(s)	125
Bso31I	GGTCTC	1 cut(s)	125
BspACI	CCGC	1 cut(s)	175
BspLI	GGNNCC	1 cut(s)	162
BspT107I	GGYRCC	1 cut(s)	160
BspTNI	GGTCTC	1 cut(s)	125
BsrDI	GCAATG	1 cut(s)	161
Bst4CI	ACNGT	1 cut(s)	125
Bst6I	CTCTTC	1 cut(s)	180
BstAPI	GCANNNNNTGC	1 cut(s)	160
BstC8I	GCNNGC	2 cut(s)	9, 152
BstMAI	GTCTC	1 cut(s)	125
BstMWI	GCNNNNNNNGC	1 cut(s)	160
BstV1I	GCAGC	2 cut(s)	233, 236
BtsIMutI	CAGTG	1 cut(s)	130
Cac8I	GCNNGC	2 cut(s)	9, 152
CviAII	CATG	1 cut(s)	54
CviJI	RGCY	3 cut(s)	224, 230, 246
CviKI_1	RGCY	3 cut(s)	224, 230, 246
Eam1104I	CTCTTC	1 cut(s)	180
EarI	CTCTTC	1 cut(s)	180
Eco31I	GGTCTC	1 cut(s)	125
FaeI	CATG	1 cut(s)	57
FaiI	YATR	6 cut(s)	13, 15, 55, 115, 138, 206
FatI	CATG	1 cut(s)	53
FauI	CCCGC	1 cut(s)	168
FauNDI	CATATG	1 cut(s)	13
Fnu4HI	GCNGC	2 cut(s)	247, 250
Fsp4HI	GCNGC	2 cut(s)	247, 250
GluI	GCNGC	2 cut(s)	247, 250
GsaI	CCCAGC	1 cut(s)	228
Hin1II	CATG	1 cut(s)	57
HphI	GGTGA	1 cut(s)	140
Hpy166II	GTNNAC	1 cut(s)	60
Hpy188I	TCNGA	1 cut(s)	147
Hpy188III	TCNNGA	1 cut(s)	26
Hpy8I	GTNNAC	1 cut(s)	60
HpyCH4III	ACNGT	1 cut(s)	125
HpyCH4V	TGCA	2 cut(s)	7, 194
HpyF10VI	GCNNNNNNNGC	1 cut(s)	160
Hsp92II	CATG	1 cut(s)	57
LpnPI	CCDG	3 cut(s)	63, 210, 248
Lsp1109I	GCAGC	2 cut(s)	233, 236
MaeIII	GTNAC	1 cut(s)	91
MboII	GAAGA	2 cut(s)	44, 197
MluCI	AATT	1 cut(s)	81
MnlI	CCTC	3 cut(s)	22, 214, 236
MseI	TTAA	1 cut(s)	84
MwoI	GCNNNNNNNGC	1 cut(s)	160
NdeI	CATATG	1 cut(s)	13
NlaIII	CATG	1 cut(s)	57
NlaIV	GGNNCC	1 cut(s)	162
PflMI	CCANNNNNTGG	1 cut(s)	170
PkrI	GCNGC	2 cut(s)	248, 251
PshBI	ATTAAT	1 cut(s)	84
PspFI	CCCAGC	1 cut(s)	224
PspN4I	GGNNCC	1 cut(s)	162
SaqAI	TTAA	1 cut(s)	84
SatI	GCNGC	2 cut(s)	247, 250
SetI	ASST	1 cut(s)	137
SmlI	CTYRAG	1 cut(s)	26
SmoI	CTYRAG	1 cut(s)	26
Sse9I	AATT	1 cut(s)	81
SsiI	CCGC	1 cut(s)	175
TaaI	ACNGT	1 cut(s)	125
TasI	AATT	1 cut(s)	81
Tru1I	TTAA	1 cut(s)	84
Tru9I	TTAA	1 cut(s)	84
TscAI	CASTG	1 cut(s)	130
TseI	GCWGC	2 cut(s)	246, 249
TspDTI	ATGAA	1 cut(s)	198
TspRI	CASTG	1 cut(s)	130
Van91I	CCANNNNNTGG	1 cut(s)	170
VspI	ATTAAT	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.