Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002729

Physical Location & Seq

Genomic Coordinates Reverse (-)

35281688 .. 35284289

Gene Structure 2602 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0323000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1710 bp

ATGAAGCGAAATCACCAAGTCAGTTGCGGCGGAGGTCAAAATGGTGGCAATACGTCCGTCTCTAATAGTAGCAAGGCCAAAATTTGGGAGGAGGAGCAAGAATCTGGAAGCATGGATGAGTTATTGGCCGTTTTGGGCTACAAAGTCAGGTCCGATGACATGGCCGATGTGGCCGAGAAGCTTGAACAGCTTGAGATGGTCATGGGTTCAGCTCAACAAGATGGGATTTCACAGCTTTCCGATACAGTTCATTACAACCCATCCGATCTCTCCGGCTGGCTCCAGACCATGCTCTCTGAACTCAACCCAATTGACGACGTCTTGTCAAACTCTCAGCAGCAGAGGCAGAGGCAGAAGCAGAAGCAGATTGAGACCCAATCTCGGGTCATTATTTACGATGACAACTCCGAGTACGATCTCAGAGCCATTCCTGGTATTGCAGCCTACCCACAATCCCAATTGCAAACCGAGACTGAAACTACTAGCAAACGGTTGAAAACCTCAATTGGTTCGGCATCATCATCTTCTTCTTCGATTGAGCCTCGGCCAGTCGTTGTGGTTGATGCACAGGATACAGGGGTGAGATTGGTGCACACACTCTTGGCCTGTGCTGAGGCTGTTCAGCAAGACAACTTGAAGGTGGCCGACGCGCTCGTCAAGCAAGTAGGCACACTCGCCGTCTCCCAGACCGGCGCTATGAGAAAGGTCGCCACTTACTTTGCAGAAGCCCTTGCTCGACGTATTTACAAAGTCTACCCTCAAGAGGATTCTCTCGTTTCTTCCTACTCGGATATTCTTCAGATGCATTTCTACGAGACCTGCCCTTACCTCAAATTTGCCCACTTCACTGCCAATCAAGCTATTCTCGAAGCATTCGCCACCGCAACCAGAGTACACGTCGTCGATTTCGGGCTGAAGCAAGGGATGCAATGGCCGGCTCTGATGCAAGCGCTCGCATTGAGGCCTGGTGGGCCGCCGGTGTTTCGGCTTACGGGTGTTGGGCCGCCGCAGCCGGACAACACAGACGCCCTGCAGCAAGTGGGTTGGAAATTGGCCCAATTCGCGGAGACCATGGGCGTCGAGTTCGAGTTTCGAGGTTTTGTCGCAAACAGTTTGGCTGATCTGGAGCCGTCAATGCTCGACGTCCGTCCGCCGGAAGTAGAGACCTTGGCGGTCAACTCTATTTTCGAGCTCCACTGCCTGTTGGCGCGACCGGGGGCGATAGAGAAAGTCATGGCTTCAATCAAATCCATGAATCCCAAGATTGTTACGATGGTGGAGCAGGAGGCGAATCATAACGGCCCGGTTTTTCTGGACCGGTTCAACGAGTCATTGCACTATTACTCCAGCTTATTTGACTCGTTGGAGGGTTCGTCTGGGCCGAGTGAAGACCTGGTCTTGTCGGAGGTGTACCTGGGAAGGCAGATATGCGACGTGGTGGCATGTGATGGTGGGGACAGAGTGGAGCGCCATGAGACCCTGACGCAGTGGCGGAACCGGTTGAGCCGAGCCGGGTTCGAACCGGTTCATCTGGGATCCAACGTGTTCAAGCAGGCGAAGACGTTGCTGGCGCTTTACGCCGGCGGAGGTGGGTATCAGGTGGAGGAGAACAATGGGTCTCTCATGCTTGGGTGGCACACACGGCCTCTCATCGCCACCTCGGCTTGGCAACTGGCGAGTCCGAGTCCGAGTCCGAGTCGACTCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000932 GO:0000956 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0007186 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009892 GO:0009933 GO:0009965 GO:0009987 GO:0010014 GO:0010015 GO:0010016 GO:0010033 GO:0010071 GO:0010072 GO:0010154 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0022414 GO:0022622 GO:0023052 GO:0031086 GO:0031087 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0046983 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048532 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0090304 GO:0090305 GO:0090421 GO:0097159 GO:0099402 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1905392 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

Ge1_WD40

Protein Analysis

569

Amino Acids

62.51

Weight (kDa)

5.15

Isoelectric Point (pI)

53.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DELLA	PF12041	39 - 104	1.8e-33	Transcriptional regulator DELLA protein N terminal
GRAS	PF03514	196 - 557	3.7e-135	GRAS domain family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002729)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22740
fragaria_vesca	FvH4_4g00800 FvH4_4g00800 FvH4_4g00800
malus_domestica	MD00G1181400.v1.1
prunus_persica	Prupe.1G018900_v2.0.a1 Prupe.1G018900_v2.0.a1 Prupe.1G018900_v2.0.a1
pyrus_communis	pycom13g17110
rosa_chinensis	RchiOBHm_Chr4g0386691 RchiOBHm_Chr4g0386711 RchiOBHm_Chr4g0386841 RchiOBHm_Chr4g0386961 RchiOBHm_Chr4g0386981 RchiOBHm_Chr4g0387271 RchiOBHm_Chr4g0387331 RchiOBHm_Chr4g0387351 RchiOBHm_Chr4g0387451 RchiOBHm_Chr7g0204331
rosa_multiflora	Rmu_sc0000013.1_g000020 Rmu_sc0000013.1_g000025 Rmu_sc0001317.1_g000013 Rmu_sc0001395.1_g000003 Rmu_sc0001942.1_g000050 Rmu_sc0006571.1_g000023 Rmu_sc0006648.1_g000005 Rmu_sc0027325.1_g000001
rosa_roxburghii	Rroxscaffold_5G00334040 Rroxscaffold_5G00334070
rosa_rugosa	Rorug03G0308800 Rorug03G0309400 Rorug03G0323000
rosa_samantha	Rh1DG032500 Rh4AG015400 Rh4DG011100
rosa_wichuraiana	Rw4G000880 Rw4G000920 Rw4G000950 Rw4G001260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	653
AatII	GACGTC	2 cut(s)	321, 1146
Acc36I	ACCTGC	1 cut(s)	827
AccB7I	CCANNNNNTGG	1 cut(s)	84
AccI	GTMKAC	2 cut(s)	753, 1699
AccII	CGCG	3 cut(s)	650, 1064, 1210
AclWI	GGATC	2 cut(s)	1530, 1543
AcoI	YGGCCR	6 cut(s)	126, 162, 171, 545, 642, 932
AcsI	RAATTY	2 cut(s)	81, 833
AcuI	CTGAAG	2 cut(s)	782, 935
AcyI	GRCGYC	4 cut(s)	318, 1026, 1077, 1143
AfaI	GTAC	3 cut(s)	413, 894, 1412
AfeI	AGCGCT	1 cut(s)	951
AfiI	CCNNNNNNNGG	7 cut(s)	84, 381, 382, 763, 1063, 1153, 1665
AflIII	ACRYGT	2 cut(s)	895, 1542
AgeI	ACCGGT	3 cut(s)	1317, 1497, 1522
AgsI	TTSAA	6 cut(s)	185, 496, 637, 1242, 1324, 1549
AhdI	GACNNNNNGTC	1 cut(s)	322
AjiI	CACGTC	2 cut(s)	898, 1435
AjnI	CCWGG	4 cut(s)	430, 964, 1392, 1413
AluBI	AGCT	7 cut(s)	181, 190, 212, 235, 860, 1192, 1350
AluI	AGCT	7 cut(s)	181, 190, 212, 235, 860, 1192, 1350
Alw21I	GWGCWC	2 cut(s)	594, 1194
Alw26I	GTCTC	9 cut(s)	64, 365, 464, 685, 809, 1061, 1157, 1469, 1623
Alw44I	GTGCAC	1 cut(s)	590
AlwI	GGATC	2 cut(s)	1530, 1543
Ama87I	CYCGRG	1 cut(s)	381
Aor51HI	AGCGCT	1 cut(s)	951
ApaLI	GTGCAC	1 cut(s)	590
ApeKI	GCWGC	4 cut(s)	337, 440, 1009, 1033
ApoI	RAATTY	2 cut(s)	81, 833
AsiGI	ACCGGT	3 cut(s)	1317, 1497, 1522
Asp700I	GAANNNNTTC	1 cut(s)	1524
AspLEI	GCGC	6 cut(s)	652, 695, 952, 1210, 1470, 1573
AspS9I	GGNCC	7 cut(s)	150, 971, 1001, 1054, 1301, 1315, 1379
AsuC2I	CCSGG	3 cut(s)	1215, 1304, 1513
AsuHPI	GGTGA	2 cut(s)	5, 592
AsuII	TTCGAA	1 cut(s)	1518
AvaI	CYCGRG	1 cut(s)	381
AvaII	GGWCC	2 cut(s)	150, 1315
BaeGI	GKGCMC	1 cut(s)	594
BaeI	ACNNNNGTAYC	2 cut(s)	564, 597
BamHI	GGATCC	1 cut(s)	1535
BanII	GRGCYC	1 cut(s)	1194
BbsI	GAAGAC	2 cut(s)	1395, 1565
Bbv12I	GWGCWC	2 cut(s)	594, 1194
BbvCI	CCTCAGC	1 cut(s)	612
BbvI	GCAGC	4 cut(s)	349, 452, 1021, 1045
BccI	CCATC	5 cut(s)	190, 215, 268, 1267, 1442
BceAI	ACGGC	5 cut(s)	113, 662, 1114, 1315, 1658
BcgI	CGANNNNNNTGC	2 cut(s)	1546, 1580
BciT130I	CCWGG	4 cut(s)	432, 966, 1394, 1415
BciVI	GTATCC	1 cut(s)	565
BcnI	CCSGG	3 cut(s)	1215, 1304, 1513
BcoDI	GTCTC	9 cut(s)	64, 365, 464, 685, 809, 1061, 1157, 1469, 1623
BfaI	CTAG	1 cut(s)	483
BfmI	CTRYAG	1 cut(s)	1031
BfoI	RGCGCY	4 cut(s)	696, 953, 1471, 1574
BfuAI	ACCTGC	1 cut(s)	827
BfuI	GTATCC	1 cut(s)	565
BglI	GCCNNNNNGGC	3 cut(s)	170, 970, 1661
BisI	GCNGC	8 cut(s)	28, 338, 441, 974, 1004, 1007, 1010, 1034
BlsI	GCNGC	8 cut(s)	29, 339, 442, 975, 1005, 1008, 1011, 1035
Bme1390I	CCNGG	7 cut(s)	432, 966, 1215, 1304, 1394, 1415, 1513
Bme18I	GGWCC	2 cut(s)	150, 1315
BmeRI	GACNNNNNGTC	1 cut(s)	322
BmeT110I	CYCGRG	1 cut(s)	381
BmgBI	CACGTC	2 cut(s)	898, 1435
BmgT120I	GGNCC	7 cut(s)	150, 971, 1001, 1054, 1301, 1315, 1379
BmiI	GGNNCC	4 cut(s)	281, 1128, 1496, 1537
BmrFI	CCNGG	7 cut(s)	432, 966, 1215, 1304, 1394, 1415, 1513
BmsI	GCATC	5 cut(s)	524, 553, 792, 915, 933
BoxI	GACNNNNGTC	1 cut(s)	1146
BpiI	GAAGAC	2 cut(s)	1395, 1565
BpmI	CTGGAG	3 cut(s)	266, 1145, 1330
Bpu10I	CCTNAGC	1 cut(s)	612
Bpu14I	TTCGAA	1 cut(s)	1518
BpuEI	CTTGAG	2 cut(s)	212, 744
BpuMI	CCSGG	3 cut(s)	1215, 1304, 1513
BsaHI	GRCGYC	4 cut(s)	318, 1026, 1077, 1143
BsaI	GGTCTC	6 cut(s)	365, 809, 1061, 1157, 1469, 1623
BsaJI	CCNNGG	6 cut(s)	542, 1071, 1167, 1214, 1414, 1659
BsaWI	WCCGGW	3 cut(s)	1317, 1497, 1522
BsaXI	ACNNNNNCTCC	4 cut(s)	1328, 1358, 1358, 1388
Bsc4I	CCNNNNNNNGG	7 cut(s)	84, 381, 382, 763, 1063, 1153, 1665
Bse118I	RCCGGY	7 cut(s)	689, 934, 976, 1317, 1497, 1522, 1580
Bse1I	ACTGG	2 cut(s)	548, 1677
Bse3DI	GCAATG	2 cut(s)	935, 1331
BseBI	CCWGG	4 cut(s)	432, 966, 1394, 1415
BseDI	CCNNGG	6 cut(s)	542, 1071, 1167, 1214, 1414, 1659
BseGI	GGATG	3 cut(s)	121, 260, 930
BseLI	CCNNNNNNNGG	7 cut(s)	84, 381, 382, 763, 1063, 1153, 1665
BseMI	GCAATG	2 cut(s)	935, 1331
BseMII	CTCAG	3 cut(s)	347, 433, 603
BseNI	ACTGG	2 cut(s)	548, 1677
BseRI	GAGGAG	3 cut(s)	104, 107, 1619
BseSI	GKGCMC	1 cut(s)	594
BseXI	GCAGC	4 cut(s)	349, 452, 1021, 1045
Bsh1236I	CGCG	3 cut(s)	650, 1064, 1210
Bsh1285I	CGRYCG	1 cut(s)	1214
BshTI	ACCGGT	3 cut(s)	1317, 1497, 1522
BsiEI	CGRYCG	1 cut(s)	1214
BsiHKAI	GWGCWC	2 cut(s)	594, 1194
BsiHKCI	CYCGRG	1 cut(s)	381
BslFI	GGGAC	1 cut(s)	1469
BslI	CCNNNNNNNGG	7 cut(s)	84, 381, 382, 763, 1063, 1153, 1665
BsmAI	GTCTC	9 cut(s)	64, 365, 464, 685, 809, 1061, 1157, 1469, 1623
BsmBI	CGTCTC	2 cut(s)	64, 685
BsmFI	GGGAC	1 cut(s)	1469
BsmI	GAATGC	1 cut(s)	872
Bso31I	GGTCTC	6 cut(s)	365, 809, 1061, 1157, 1469, 1623
BsoBI	CYCGRG	1 cut(s)	381
Bsp119I	TTCGAA	1 cut(s)	1518
Bsp1286I	GDGCHC	2 cut(s)	594, 1194
Bsp143I	GATC	4 cut(s)	265, 415, 1120, 1535
Bsp19I	CCATGG	1 cut(s)	1071
BspCNI	CTCAG	3 cut(s)	346, 432, 604
BspFNI	CGCG	3 cut(s)	650, 1064, 1210
BspLI	GGNNCC	4 cut(s)	281, 1128, 1496, 1537
BspMAI	CTGCAG	1 cut(s)	1035
BspMI	ACCTGC	1 cut(s)	827
BspPI	GGATC	2 cut(s)	1530, 1543
BspT104I	TTCGAA	1 cut(s)	1518
BspTNI	GGTCTC	6 cut(s)	365, 809, 1061, 1157, 1469, 1623
BsrDI	GCAATG	2 cut(s)	935, 1331
BsrFI	RCCGGY	7 cut(s)	689, 934, 976, 1317, 1497, 1522, 1580
BsrI	ACTGG	2 cut(s)	548, 1677
BssAI	RCCGGY	7 cut(s)	689, 934, 976, 1317, 1497, 1522, 1580
BssECI	CCNNGG	6 cut(s)	542, 1071, 1167, 1214, 1414, 1659
BssMI	GATC	4 cut(s)	265, 415, 1120, 1535
BssNI	GRCGYC	4 cut(s)	318, 1026, 1077, 1143
BssT1I	CCWWGG	2 cut(s)	1071, 1167
Bst2UI	CCWGG	4 cut(s)	432, 966, 1394, 1415
Bst4CI	ACNGT	3 cut(s)	247, 492, 1112
BstACI	GRCGYC	4 cut(s)	318, 1026, 1077, 1143
BstAPI	GCANNNNNTGC	1 cut(s)	925
BstBI	TTCGAA	1 cut(s)	1518
BstC8I	GCNNGC	7 cut(s)	278, 936, 948, 954, 1554, 1569, 1582
BstDEI	CTNAG	4 cut(s)	333, 419, 612, 1703
BstDSI	CCRYGG	1 cut(s)	1071
BstF5I	GGATG	3 cut(s)	121, 260, 930
BstFNI	CGCG	3 cut(s)	650, 1064, 1210
BstH2I	RGCGCY	4 cut(s)	696, 953, 1471, 1574
BstHHI	GCGC	6 cut(s)	652, 695, 952, 1210, 1470, 1573
BstKTI	GATC	4 cut(s)	268, 418, 1123, 1538
BstMAI	GTCTC	9 cut(s)	64, 365, 464, 685, 809, 1061, 1157, 1469, 1623
BstMBI	GATC	4 cut(s)	265, 415, 1120, 1535
BstMCI	CGRYCG	1 cut(s)	1214
BstNI	CCWGG	4 cut(s)	432, 966, 1394, 1415
BstNSI	RCATGY	1 cut(s)	1446
BstPAI	GACNNNNGTC	1 cut(s)	1146
BstSCI	CCNGG	7 cut(s)	430, 964, 1213, 1302, 1392, 1413, 1511
BstSFI	CTRYAG	1 cut(s)	1031
BstSLI	GKGCMC	1 cut(s)	594
BstUI	CGCG	3 cut(s)	650, 1064, 1210
BstV1I	GCAGC	4 cut(s)	349, 452, 1021, 1045
BstV2I	GAAGAC	2 cut(s)	1395, 1565
BstX2I	RGATCY	1 cut(s)	1535
BstYI	RGATCY	1 cut(s)	1535
BsuI	GTATCC	1 cut(s)	565
BtgI	CCRYGG	1 cut(s)	1071
BtgZI	GCGATG	1 cut(s)	1636
BtrI	CACGTC	2 cut(s)	898, 1435
BtsCI	GGATG	3 cut(s)	121, 260, 930
BtsI	GCAGTG	3 cut(s)	846, 1195, 1493
BtsIMutI	CAGTG	3 cut(s)	846, 1195, 1493
BveI	ACCTGC	1 cut(s)	827
Cac8I	GCNNGC	7 cut(s)	278, 936, 948, 954, 1554, 1569, 1582
CfoI	GCGC	6 cut(s)	652, 695, 952, 1210, 1470, 1573
Cfr10I	RCCGGY	7 cut(s)	689, 934, 976, 1317, 1497, 1522, 1580
Cfr13I	GGNCC	7 cut(s)	150, 971, 1001, 1054, 1301, 1315, 1379
CseI	GACGC	4 cut(s)	656, 1034, 1066, 1492
CsiI	ACCWGGT	1 cut(s)	1392
Csp6I	GTAC	3 cut(s)	412, 893, 1411
CspAI	ACCGGT	3 cut(s)	1317, 1497, 1522
CspCI	CAANNNNNGTGG	2 cut(s)	700, 735
CviQI	GTAC	3 cut(s)	412, 893, 1411
DdeI	CTNAG	4 cut(s)	333, 419, 612, 1703
DpnI	GATC	4 cut(s)	267, 417, 1122, 1537
DpnII	GATC	4 cut(s)	265, 415, 1120, 1535
DrdI	GACNNNNNNGTC	1 cut(s)	653
DriI	GACNNNNNGTC	1 cut(s)	322
DseDI	GACNNNNNNGTC	1 cut(s)	653
EaeI	YGGCCR	6 cut(s)	126, 162, 171, 545, 642, 932
Eam1105I	GACNNNNNGTC	1 cut(s)	322
EciI	GGCGGA	4 cut(s)	45, 1140, 1507, 1599
Ecl136II	GAGCTC	1 cut(s)	1192
Eco130I	CCWWGG	2 cut(s)	1071, 1167
Eco147I	AGGCCT	1 cut(s)	964
Eco24I	GRGCYC	1 cut(s)	1194
Eco31I	GGTCTC	6 cut(s)	365, 809, 1061, 1157, 1469, 1623
Eco47I	GGWCC	2 cut(s)	150, 1315
Eco47III	AGCGCT	1 cut(s)	951
Eco53kI	GAGCTC	1 cut(s)	1192
Eco57I	CTGAAG	2 cut(s)	782, 935
Eco88I	CYCGRG	1 cut(s)	381
EcoICRI	GAGCTC	1 cut(s)	1192
EcoRII	CCWGG	4 cut(s)	430, 964, 1392, 1413
EcoT14I	CCWWGG	2 cut(s)	1071, 1167
EcoT22I	ATGCAT	1 cut(s)	807
EcoT38I	GRGCYC	1 cut(s)	1194
ErhI	CCWWGG	2 cut(s)	1071, 1167
Esp3I	CGTCTC	2 cut(s)	64, 685
FaqI	GGGAC	1 cut(s)	1469
FblI	GTMKAC	2 cut(s)	753, 1699
Fnu4HI	GCNGC	8 cut(s)	28, 338, 441, 974, 1004, 1007, 1010, 1034
FokI	GGATG	3 cut(s)	128, 247, 937
FriOI	GRGCYC	1 cut(s)	1194
Fsp4HI	GCNGC	8 cut(s)	28, 338, 441, 974, 1004, 1007, 1010, 1034
FspBI	CTAG	1 cut(s)	483
GlaI	GCGC	6 cut(s)	651, 694, 951, 1209, 1469, 1572
GluI	GCNGC	8 cut(s)	28, 338, 441, 974, 1004, 1007, 1010, 1034
GsuI	CTGGAG	3 cut(s)	266, 1145, 1330
HaeII	RGCGCY	4 cut(s)	696, 953, 1471, 1574
HgaI	GACGC	4 cut(s)	656, 1034, 1066, 1492
HhaI	GCGC	6 cut(s)	652, 695, 952, 1210, 1470, 1573
Hin1I	GRCGYC	4 cut(s)	318, 1026, 1077, 1143
Hin6I	GCGC	6 cut(s)	650, 693, 950, 1208, 1468, 1571
HinP1I	GCGC	6 cut(s)	650, 693, 950, 1208, 1468, 1571
HincII	GTYRAC	2 cut(s)	1177, 1700
HindII	GTYRAC	2 cut(s)	1177, 1700
HindIII	AAGCTT	1 cut(s)	179
HphI	GGTGA	2 cut(s)	5, 592
Hpy166II	GTNNAC	6 cut(s)	592, 754, 895, 1177, 1411, 1700
Hpy188III	TCNNGA	6 cut(s)	105, 283, 761, 866, 1124, 1313
Hpy8I	GTNNAC	6 cut(s)	592, 754, 895, 1177, 1411, 1700
Hpy99I	CGWCG	8 cut(s)	320, 650, 741, 902, 905, 1082, 1145, 1436
HpyAV	CCTTC	2 cut(s)	631, 1413
HpyCH4III	ACNGT	3 cut(s)	247, 492, 1112
HpyCH4IV	ACGT	8 cut(s)	53, 318, 739, 897, 1143, 1434, 1542, 1562
HpyF3I	CTNAG	4 cut(s)	333, 419, 612, 1703
HpySE526I	ACGT	8 cut(s)	53, 318, 739, 897, 1143, 1434, 1542, 1562
Hsp92I	GRCGYC	4 cut(s)	318, 1026, 1077, 1143
HspAI	GCGC	6 cut(s)	650, 693, 950, 1208, 1468, 1571
KroI	GCCGGC	2 cut(s)	934, 1580
KroNI	GCCGGC	2 cut(s)	936, 1582
Kzo9I	GATC	4 cut(s)	265, 415, 1120, 1535
LmnI	GCTCC	6 cut(s)	94, 285, 1126, 1197, 1279, 1465
Lsp1109I	GCAGC	4 cut(s)	349, 452, 1021, 1045
LweI	GCATC	5 cut(s)	524, 553, 792, 915, 933
MabI	ACCWGGT	1 cut(s)	1392
MaeI	CTAG	1 cut(s)	483
MaeII	ACGT	8 cut(s)	53, 318, 739, 897, 1143, 1434, 1542, 1562
MaeIII	GTNAC	1 cut(s)	1267
MalI	GATC	4 cut(s)	267, 417, 1122, 1537
MboI	GATC	4 cut(s)	265, 415, 1120, 1535
MboII	GAAGA	7 cut(s)	516, 519, 522, 771, 788, 1400, 1570
MfeI	CAATTG	3 cut(s)	309, 458, 504
MflI	RGATCY	1 cut(s)	1535
MhlI	GDGCHC	2 cut(s)	594, 1194
MluCI	AATT	7 cut(s)	81, 309, 458, 504, 833, 1049, 1058
MlyI	GAGTC	7 cut(s)	1337, 1352, 1687, 1693, 1695, 1699, 1705
MmeI	TCCRAC	4 cut(s)	1025, 1344, 1383, 1563
Mph1103I	ATGCAT	1 cut(s)	807
MreI	CGCCGGCG	1 cut(s)	1580
MroNI	GCCGGC	2 cut(s)	934, 1580
MroXI	GAANNNNTTC	1 cut(s)	1524
MspR9I	CCNGG	7 cut(s)	432, 966, 1215, 1304, 1394, 1415, 1513
MunI	CAATTG	3 cut(s)	309, 458, 504
Mva1269I	GAATGC	1 cut(s)	872
MvaI	CCWGG	4 cut(s)	432, 966, 1394, 1415
MvnI	CGCG	3 cut(s)	650, 1064, 1210
NaeI	GCCGGC	2 cut(s)	936, 1582
NciI	CCSGG	3 cut(s)	1215, 1304, 1513
NcoI	CCATGG	1 cut(s)	1071
NdeII	GATC	4 cut(s)	265, 415, 1120, 1535
NgoMIV	GCCGGC	2 cut(s)	934, 1580
NlaIV	GGNNCC	4 cut(s)	281, 1128, 1496, 1537
NmeAIII	GCCGAG	5 cut(s)	199, 523, 1407, 1532, 1640
NsiI	ATGCAT	1 cut(s)	807
NspI	RCATGY	1 cut(s)	1446
NspV	TTCGAA	1 cut(s)	1518
PceI	AGGCCT	1 cut(s)	964
PcsI	WCGNNNNNNNCGW	1 cut(s)	1379
PctI	GAATGC	1 cut(s)	872
PdiI	GCCGGC	2 cut(s)	936, 1582
PdmI	GAANNNNTTC	1 cut(s)	1524
PfeI	GAWTC	4 cut(s)	101, 767, 1255, 1291
PflFI	GACNNNGTC	2 cut(s)	317, 1394
PflMI	CCANNNNNTGG	1 cut(s)	84
PinAI	ACCGGT	3 cut(s)	1317, 1497, 1522
PkrI	GCNGC	8 cut(s)	29, 339, 442, 975, 1005, 1008, 1011, 1035
PleI	GAGTC	7 cut(s)	1336, 1352, 1686, 1692, 1695, 1698, 1704
PpsI	GAGTC	7 cut(s)	1336, 1352, 1686, 1692, 1695, 1698, 1704
PshAI	GACNNNNGTC	1 cut(s)	1146
Psp124BI	GAGCTC	1 cut(s)	1194
Psp6I	CCWGG	4 cut(s)	430, 964, 1392, 1413
PspGI	CCWGG	4 cut(s)	430, 964, 1392, 1413
PspN4I	GGNNCC	4 cut(s)	281, 1128, 1496, 1537
PspPI	GGNCC	7 cut(s)	150, 971, 1001, 1054, 1301, 1315, 1379
PstI	CTGCAG	1 cut(s)	1035
PsuI	RGATCY	1 cut(s)	1535
PsyI	GACNNNGTC	2 cut(s)	317, 1394
RsaI	GTAC	3 cut(s)	413, 894, 1412
RsaNI	GTAC	3 cut(s)	412, 893, 1411
SacI	GAGCTC	1 cut(s)	1194
SalI	GTCGAC	1 cut(s)	1698
SatI	GCNGC	8 cut(s)	28, 338, 441, 974, 1004, 1007, 1010, 1034
Sau3AI	GATC	4 cut(s)	265, 415, 1120, 1535
Sau96I	GGNCC	7 cut(s)	150, 971, 1001, 1054, 1301, 1315, 1379
SchI	GAGTC	7 cut(s)	1337, 1352, 1687, 1693, 1695, 1699, 1705
ScrFI	CCNGG	7 cut(s)	432, 966, 1215, 1304, 1394, 1415, 1513
SduI	GDGCHC	2 cut(s)	594, 1194
SexAI	ACCWGGT	1 cut(s)	1392
SfaNI	GCATC	5 cut(s)	524, 553, 792, 915, 933
SfcI	CTRYAG	1 cut(s)	1031
SfiI	GGCCNNNNNGGCC	2 cut(s)	170, 970
SfuI	TTCGAA	1 cut(s)	1518
SgrAI	CRCCGGYG	2 cut(s)	976, 1580
SinI	GGWCC	2 cut(s)	150, 1315
SmlI	CTYRAG	2 cut(s)	191, 759
SmoI	CTYRAG	2 cut(s)	191, 759
Sse9I	AATT	7 cut(s)	81, 309, 458, 504, 833, 1049, 1058
SseBI	AGGCCT	1 cut(s)	964
SspMI	CTAG	1 cut(s)	483
SstI	GAGCTC	1 cut(s)	1194
StuI	AGGCCT	1 cut(s)	964
StyD4I	CCNGG	7 cut(s)	430, 964, 1213, 1302, 1392, 1413, 1511
StyI	CCWWGG	2 cut(s)	1071, 1167
TaaI	ACNGT	3 cut(s)	247, 492, 1112
TaiI	ACGT	8 cut(s)	56, 321, 742, 900, 1146, 1437, 1545, 1565
TasI	AATT	7 cut(s)	81, 309, 458, 504, 833, 1049, 1058
TatI	WGTACW	1 cut(s)	892
TauI	GCSGC	4 cut(s)	30, 976, 1006, 1009
TfiI	GAWTC	4 cut(s)	101, 767, 1255, 1291
TscAI	CASTG	3 cut(s)	853, 1202, 1493
TseI	GCWGC	4 cut(s)	337, 440, 1009, 1033
TspDTI	ATGAA	4 cut(s)	17, 239, 1268, 1517
TspGWI	ACGGA	2 cut(s)	46, 1136
TspRI	CASTG	3 cut(s)	853, 1202, 1493
Tth111I	GACNNNGTC	2 cut(s)	317, 1394
Van91I	CCANNNNNTGG	1 cut(s)	84
VneI	GTGCAC	1 cut(s)	590
VpaK11BI	GGWCC	2 cut(s)	150, 1315
XapI	RAATTY	2 cut(s)	81, 833
XceI	RCATGY	1 cut(s)	1446
XmiI	GTMKAC	2 cut(s)	753, 1699
XmnI	GAANNNNTTC	1 cut(s)	1524
XspI	CTAG	1 cut(s)	483
ZraI	GACGTC	2 cut(s)	319, 1144
Zsp2I	ATGCAT	1 cut(s)	807

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.