Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000013.1

Orthogroup ID

OG0002729

Physical Location & Seq

Genomic Coordinates Reverse (-)

83798 .. 84733

Gene Structure 936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000013.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

atggtgcaggcatatgctgaacttcttgaggaagaagcaatagatattccagcatggtttacttttgcttctaaagatggaattaatgtggcatatgctgaacttcttgaggaagaagcaatagatattccagcatggtttacttttgcttctaaagatggaattaatgtggtaacaagcaaaccaatagtgatataccccaacagtggtgagacctatgatggtcagagcaagcaatgggtgccgttgagtgggcgggttgatgaagagtttgcagaaatagtcatagcgaagtggcgtgaggctggggcttccctgtttggaggctgctgcagaacaactccaaataccataagggcaatatctaaggctctttctaacaagtcttctgcagttaacgacgcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko01110 map00270 map01100 map01110

Pfam Domains

Protein Families

S-methyl_trans

Protein Analysis

135

Amino Acids

14.74

Weight (kDa)

4.41

Isoelectric Point (pI)

37.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002729)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22740
fragaria_vesca	FvH4_4g00800 FvH4_4g00800 FvH4_4g00800
malus_domestica	MD00G1181400.v1.1
prunus_persica	Prupe.1G018900_v2.0.a1 Prupe.1G018900_v2.0.a1 Prupe.1G018900_v2.0.a1
pyrus_communis	pycom13g17110
rosa_chinensis	RchiOBHm_Chr4g0386691 RchiOBHm_Chr4g0386711 RchiOBHm_Chr4g0386841 RchiOBHm_Chr4g0386961 RchiOBHm_Chr4g0386981 RchiOBHm_Chr4g0387271 RchiOBHm_Chr4g0387331 RchiOBHm_Chr4g0387351 RchiOBHm_Chr4g0387451 RchiOBHm_Chr7g0204331
rosa_multiflora	Rmu_sc0000013.1_g000020 Rmu_sc0000013.1_g000025 Rmu_sc0001317.1_g000013 Rmu_sc0001395.1_g000003 Rmu_sc0001942.1_g000050 Rmu_sc0006571.1_g000023 Rmu_sc0006648.1_g000005 Rmu_sc0027325.1_g000001
rosa_roxburghii	Rroxscaffold_5G00334040 Rroxscaffold_5G00334070
rosa_rugosa	Rorug03G0308800 Rorug03G0309400 Rorug03G0323000
rosa_samantha	Rh1DG032500 Rh4AG015400 Rh4DG011100
rosa_wichuraiana	Rw4G000880 Rw4G000920 Rw4G000950 Rw4G001260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	241
AciI	CCGC	1 cut(s)	256
AfiI	CCNNNNNNNGG	2 cut(s)	206, 251
Alw26I	GTCTC	1 cut(s)	206
ApeKI	GCWGC	2 cut(s)	327, 330
AseI	ATTAAT	2 cut(s)	84, 165
AsuHPI	GGTGA	1 cut(s)	221
BanI	GGYRCC	1 cut(s)	241
BbsI	GAAGAC	1 cut(s)	378
BbvI	GCAGC	2 cut(s)	314, 317
BccI	CCATC	3 cut(s)	71, 152, 215
BceAI	ACGGC	1 cut(s)	229
BcoDI	GTCTC	1 cut(s)	206
BfmI	CTRYAG	2 cut(s)	331, 390
BisI	GCNGC	2 cut(s)	328, 331
BlsI	GCNGC	2 cut(s)	329, 332
BmiI	GGNNCC	1 cut(s)	243
BpiI	GAAGAC	1 cut(s)	378
BpuEI	CTTGAG	2 cut(s)	47, 128
BsaI	GGTCTC	1 cut(s)	206
Bsc4I	CCNNNNNNNGG	2 cut(s)	206, 251
Bse3DI	GCAATG	1 cut(s)	242
BseLI	CCNNNNNNNGG	2 cut(s)	206, 251
BseMI	GCAATG	1 cut(s)	242
BseXI	GCAGC	2 cut(s)	314, 317
BseYI	CCCAGC	1 cut(s)	305
BsgI	GTGCAG	1 cut(s)	26
BshNI	GGYRCC	1 cut(s)	241
BslI	CCNNNNNNNGG	2 cut(s)	206, 251
BsmAI	GTCTC	1 cut(s)	206
Bso31I	GGTCTC	1 cut(s)	206
BspACI	CCGC	1 cut(s)	256
BspLI	GGNNCC	1 cut(s)	243
BspMAI	CTGCAG	2 cut(s)	335, 394
BspT107I	GGYRCC	1 cut(s)	241
BspTNI	GGTCTC	1 cut(s)	206
BsrDI	GCAATG	1 cut(s)	242
Bst4CI	ACNGT	1 cut(s)	206
Bst6I	CTCTTC	1 cut(s)	261
BstAPI	GCANNNNNTGC	1 cut(s)	241
BstC8I	GCNNGC	2 cut(s)	9, 233
BstDEI	CTNAG	2 cut(s)	366, 405
BstMAI	GTCTC	1 cut(s)	206
BstMWI	GCNNNNNNNGC	1 cut(s)	241
BstSFI	CTRYAG	2 cut(s)	331, 390
BstV1I	GCAGC	2 cut(s)	314, 317
BstV2I	GAAGAC	1 cut(s)	378
BtsIMutI	CAGTG	1 cut(s)	211
Cac8I	GCNNGC	2 cut(s)	9, 233
CviAII	CATG	2 cut(s)	54, 135
CviJI	RGCY	4 cut(s)	305, 311, 327, 371
CviKI_1	RGCY	4 cut(s)	305, 311, 327, 371
DdeI	CTNAG	2 cut(s)	366, 405
Eam1104I	CTCTTC	1 cut(s)	261
EarI	CTCTTC	1 cut(s)	261
Eco31I	GGTCTC	1 cut(s)	206
FaeI	CATG	2 cut(s)	57, 138
FatI	CATG	2 cut(s)	53, 134
FauI	CCCGC	1 cut(s)	249
FauNDI	CATATG	2 cut(s)	13, 94
Fnu4HI	GCNGC	2 cut(s)	328, 331
Fsp4HI	GCNGC	2 cut(s)	328, 331
GluI	GCNGC	2 cut(s)	328, 331
GsaI	CCCAGC	1 cut(s)	309
Hin1II	CATG	2 cut(s)	57, 138
HincII	GTYRAC	1 cut(s)	397
HindII	GTYRAC	1 cut(s)	397
HpaI	GTTAAC	1 cut(s)	397
HphI	GGTGA	1 cut(s)	221
Hpy166II	GTNNAC	3 cut(s)	60, 141, 397
Hpy188I	TCNGA	1 cut(s)	228
Hpy188III	TCNNGA	2 cut(s)	26, 107
Hpy8I	GTNNAC	3 cut(s)	60, 141, 397
Hpy99I	CGWCG	1 cut(s)	404
HpyCH4III	ACNGT	1 cut(s)	206
HpyCH4V	TGCA	4 cut(s)	7, 275, 333, 392
HpyF10VI	GCNNNNNNNGC	1 cut(s)	241
HpyF3I	CTNAG	2 cut(s)	366, 405
Hsp92II	CATG	2 cut(s)	57, 138
KspAI	GTTAAC	1 cut(s)	397
LpnPI	CCDG	4 cut(s)	63, 144, 291, 329
Lsp1109I	GCAGC	2 cut(s)	314, 317
MaeIII	GTNAC	1 cut(s)	172
MboII	GAAGA	4 cut(s)	44, 125, 278, 378
MluCI	AATT	2 cut(s)	81, 162
MnlI	CCTC	4 cut(s)	22, 103, 295, 317
MseI	TTAA	3 cut(s)	84, 165, 396
MwoI	GCNNNNNNNGC	1 cut(s)	241
NdeI	CATATG	2 cut(s)	13, 94
NlaIII	CATG	2 cut(s)	57, 138
NlaIV	GGNNCC	1 cut(s)	243
PkrI	GCNGC	2 cut(s)	329, 332
PshBI	ATTAAT	2 cut(s)	84, 165
PspFI	CCCAGC	1 cut(s)	305
PspN4I	GGNNCC	1 cut(s)	243
PstI	CTGCAG	2 cut(s)	335, 394
SaqAI	TTAA	3 cut(s)	84, 165, 396
SatI	GCNGC	2 cut(s)	328, 331
SetI	ASST	1 cut(s)	218
SfcI	CTRYAG	2 cut(s)	331, 390
SmlI	CTYRAG	2 cut(s)	26, 107
SmoI	CTYRAG	2 cut(s)	26, 107
Sse9I	AATT	2 cut(s)	81, 162
SsiI	CCGC	1 cut(s)	256
TaaI	ACNGT	1 cut(s)	206
TasI	AATT	2 cut(s)	81, 162
Tru1I	TTAA	3 cut(s)	84, 165, 396
Tru9I	TTAA	3 cut(s)	84, 165, 396
TscAI	CASTG	1 cut(s)	211
TseI	GCWGC	2 cut(s)	327, 330
TspDTI	ATGAA	1 cut(s)	279
TspRI	CASTG	1 cut(s)	211
VspI	ATTAAT	2 cut(s)	84, 165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.