Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001942.1

Orthogroup ID

OG0002729

Physical Location & Seq

Genomic Coordinates Reverse (-)

222169 .. 223873

Gene Structure 1705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001942.1_g000050.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

atggatcaaattggagatgggtatgtgacgttggagacaattactaaggtgtttaggagacttgcaaagggtgtaagcaccaggagccaatcgaggcgtttcggggcatggagcggtgtgctgtacttcttgaggaagaaggaattggttttcattgtttctaaggatggaattgatgctccatcgagtgggcgggttgatgaagagtttgcagacatagtcatagagaagtggcgcgaggctggggcttccctgtttggaggctgctgcagaacaactccaaataccataaaggcaatatctaaggctctttctaacaagtcttgtgtagttaacgacgcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko01110 map00270 map01100 map01110

Pfam Domains

Protein Families

S-methyl_trans

Protein Analysis

114

Amino Acids

12.54

Weight (kDa)

9.33

Isoelectric Point (pI)

39.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002729)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22740
fragaria_vesca	FvH4_4g00800 FvH4_4g00800 FvH4_4g00800
malus_domestica	MD00G1181400.v1.1
prunus_persica	Prupe.1G018900_v2.0.a1 Prupe.1G018900_v2.0.a1 Prupe.1G018900_v2.0.a1
pyrus_communis	pycom13g17110
rosa_chinensis	RchiOBHm_Chr4g0386691 RchiOBHm_Chr4g0386711 RchiOBHm_Chr4g0386841 RchiOBHm_Chr4g0386961 RchiOBHm_Chr4g0386981 RchiOBHm_Chr4g0387271 RchiOBHm_Chr4g0387331 RchiOBHm_Chr4g0387351 RchiOBHm_Chr4g0387451 RchiOBHm_Chr7g0204331
rosa_multiflora	Rmu_sc0000013.1_g000020 Rmu_sc0000013.1_g000025 Rmu_sc0001317.1_g000013 Rmu_sc0001395.1_g000003 Rmu_sc0001942.1_g000050 Rmu_sc0006571.1_g000023 Rmu_sc0006648.1_g000005 Rmu_sc0027325.1_g000001
rosa_roxburghii	Rroxscaffold_5G00334040 Rroxscaffold_5G00334070
rosa_rugosa	Rorug03G0308800 Rorug03G0309400 Rorug03G0323000
rosa_samantha	Rh1DG032500 Rh4AG015400 Rh4DG011100
rosa_wichuraiana	Rw4G000880 Rw4G000920 Rw4G000950 Rw4G001260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	188
AccBSI	CCGCTC	1 cut(s)	114
AccII	CGCG	1 cut(s)	237
AciI	CCGC	2 cut(s)	114, 193
AclWI	GGATC	1 cut(s)	12
AfaI	GTAC	1 cut(s)	125
AfiI	CCNNNNNNNGG	1 cut(s)	188
AjnI	CCWGG	1 cut(s)	80
AjuI	GAANNNNNNNTTGG	2 cut(s)	128, 160
Alw26I	GTCTC	2 cut(s)	29, 52
AlwI	GGATC	1 cut(s)	12
ApeKI	GCWGC	2 cut(s)	264, 267
AspLEI	GCGC	1 cut(s)	237
BbvI	GCAGC	2 cut(s)	251, 254
BccI	CCATC	3 cut(s)	11, 161, 190
BciT130I	CCWGG	1 cut(s)	82
BcoDI	GTCTC	2 cut(s)	29, 52
BfmI	CTRYAG	1 cut(s)	268
BisI	GCNGC	2 cut(s)	265, 268
BlsI	GCNGC	2 cut(s)	266, 269
Bme1390I	CCNGG	1 cut(s)	82
BmiI	GGNNCC	1 cut(s)	86
BmrFI	CCNGG	1 cut(s)	82
BmsI	GCATC	1 cut(s)	166
BpuEI	CTTGAG	1 cut(s)	151
Bsc4I	CCNNNNNNNGG	1 cut(s)	188
BseBI	CCWGG	1 cut(s)	82
BseGI	GGATG	1 cut(s)	172
BseLI	CCNNNNNNNGG	1 cut(s)	188
BseXI	GCAGC	2 cut(s)	251, 254
BseYI	CCCAGC	1 cut(s)	242
Bsh1236I	CGCG	1 cut(s)	237
BslI	CCNNNNNNNGG	1 cut(s)	188
BsmAI	GTCTC	2 cut(s)	29, 52
Bsp143I	GATC	1 cut(s)	4
BspACI	CCGC	2 cut(s)	114, 193
BspFNI	CGCG	1 cut(s)	237
BspLI	GGNNCC	1 cut(s)	86
BspMAI	CTGCAG	1 cut(s)	272
BspPI	GGATC	1 cut(s)	12
BsrBI	CCGCTC	1 cut(s)	114
BssMI	GATC	1 cut(s)	4
Bst2UI	CCWGG	1 cut(s)	82
Bst6I	CTCTTC	1 cut(s)	198
BstDEI	CTNAG	4 cut(s)	45, 162, 303, 342
BstF5I	GGATG	1 cut(s)	172
BstFNI	CGCG	1 cut(s)	237
BstHHI	GCGC	1 cut(s)	237
BstKTI	GATC	1 cut(s)	7
BstMAI	GTCTC	2 cut(s)	29, 52
BstMBI	GATC	1 cut(s)	4
BstMWI	GCNNNNNNNGC	1 cut(s)	84
BstNI	CCWGG	1 cut(s)	82
BstSCI	CCNGG	1 cut(s)	80
BstSFI	CTRYAG	1 cut(s)	268
BstUI	CGCG	1 cut(s)	237
BstV1I	GCAGC	2 cut(s)	251, 254
BtsCI	GGATG	1 cut(s)	172
CfoI	GCGC	1 cut(s)	237
Csp6I	GTAC	1 cut(s)	124
CviAII	CATG	1 cut(s)	108
CviJI	RGCY	5 cut(s)	87, 242, 248, 264, 308
CviKI_1	RGCY	5 cut(s)	87, 242, 248, 264, 308
CviQI	GTAC	1 cut(s)	124
DdeI	CTNAG	4 cut(s)	45, 162, 303, 342
DpnI	GATC	1 cut(s)	6
DpnII	GATC	1 cut(s)	4
Eam1104I	CTCTTC	1 cut(s)	198
EarI	CTCTTC	1 cut(s)	198
EcoRII	CCWGG	1 cut(s)	80
FaeI	CATG	1 cut(s)	111
FaiI	YATR	5 cut(s)	24, 109, 218, 224, 290
FatI	CATG	1 cut(s)	107
FauI	CCCGC	1 cut(s)	186
Fnu4HI	GCNGC	2 cut(s)	265, 268
FokI	GGATG	1 cut(s)	179
Fsp4HI	GCNGC	2 cut(s)	265, 268
GlaI	GCGC	1 cut(s)	236
GluI	GCNGC	2 cut(s)	265, 268
GsaI	CCCAGC	1 cut(s)	246
HhaI	GCGC	1 cut(s)	237
Hin1II	CATG	1 cut(s)	111
Hin6I	GCGC	1 cut(s)	235
HinP1I	GCGC	1 cut(s)	235
HincII	GTYRAC	1 cut(s)	334
HindII	GTYRAC	1 cut(s)	334
HpaI	GTTAAC	1 cut(s)	334
Hpy166II	GTNNAC	1 cut(s)	334
Hpy188III	TCNNGA	1 cut(s)	130
Hpy8I	GTNNAC	1 cut(s)	334
Hpy99I	CGWCG	1 cut(s)	341
HpyAV	CCTTC	1 cut(s)	133
HpyCH4IV	ACGT	1 cut(s)	29
HpyCH4V	TGCA	3 cut(s)	65, 212, 270
HpyF10VI	GCNNNNNNNGC	1 cut(s)	84
HpyF3I	CTNAG	4 cut(s)	45, 162, 303, 342
HpySE526I	ACGT	1 cut(s)	29
Hsp92II	CATG	1 cut(s)	111
HspAI	GCGC	1 cut(s)	235
KspAI	GTTAAC	1 cut(s)	334
Kzo9I	GATC	1 cut(s)	4
LmnI	GCTCC	3 cut(s)	84, 111, 184
LpnPI	CCDG	4 cut(s)	67, 94, 228, 266
Lsp1109I	GCAGC	2 cut(s)	251, 254
LweI	GCATC	1 cut(s)	166
MaeII	ACGT	1 cut(s)	29
MaeIII	GTNAC	1 cut(s)	25
MalI	GATC	1 cut(s)	6
MbiI	CCGCTC	1 cut(s)	114
MboI	GATC	1 cut(s)	4
MboII	GAAGA	2 cut(s)	148, 215
MluCI	AATT	4 cut(s)	9, 39, 143, 171
MmeI	TCCRAC	1 cut(s)	12
MnlI	CCTC	4 cut(s)	87, 126, 232, 254
MseI	TTAA	1 cut(s)	333
MspR9I	CCNGG	1 cut(s)	82
MvaI	CCWGG	1 cut(s)	82
MvnI	CGCG	1 cut(s)	237
MwoI	GCNNNNNNNGC	1 cut(s)	84
NdeII	GATC	1 cut(s)	4
NlaIII	CATG	1 cut(s)	111
NlaIV	GGNNCC	1 cut(s)	86
NmuCI	GTSAC	1 cut(s)	25
PflFI	GACNNNGTC	1 cut(s)	218
PflMI	CCANNNNNTGG	1 cut(s)	188
PkrI	GCNGC	2 cut(s)	266, 269
Psp6I	CCWGG	1 cut(s)	80
PspFI	CCCAGC	1 cut(s)	242
PspGI	CCWGG	1 cut(s)	80
PspN4I	GGNNCC	1 cut(s)	86
PstI	CTGCAG	1 cut(s)	272
PsyI	GACNNNGTC	1 cut(s)	218
RsaI	GTAC	1 cut(s)	125
RsaNI	GTAC	1 cut(s)	124
SaqAI	TTAA	1 cut(s)	333
SatI	GCNGC	2 cut(s)	265, 268
Sau3AI	GATC	1 cut(s)	4
ScrFI	CCNGG	1 cut(s)	82
SetI	ASST	2 cut(s)	32, 51
SfaNI	GCATC	1 cut(s)	166
SfcI	CTRYAG	1 cut(s)	268
SmlI	CTYRAG	1 cut(s)	130
SmoI	CTYRAG	1 cut(s)	130
Sse9I	AATT	4 cut(s)	9, 39, 143, 171
SsiI	CCGC	2 cut(s)	114, 193
StyD4I	CCNGG	1 cut(s)	80
TaiI	ACGT	1 cut(s)	32
TaqI	TCGA	2 cut(s)	92, 185
TasI	AATT	4 cut(s)	9, 39, 143, 171
TatI	WGTACW	1 cut(s)	123
Tru1I	TTAA	1 cut(s)	333
Tru9I	TTAA	1 cut(s)	333
TseFI	GTSAC	1 cut(s)	25
TseI	GCWGC	2 cut(s)	264, 267
Tsp45I	GTSAC	1 cut(s)	25
TspDTI	ATGAA	2 cut(s)	142, 216
Tth111I	GACNNNGTC	1 cut(s)	218
Van91I	CCANNNNNTGG	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.