Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002729

Physical Location & Seq

Genomic Coordinates Reverse (-)

2315889 .. 2318253

Gene Structure 2365 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36032

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGGTTTGGGAAGCGAGGTGAAAACGTCGTCGTTCATGAGCGATTTTCTGGAGAAGTGCGGTGGCTGTGCCCTTCTGGACGGCAGGTTTGCGACGGAGCTGGAACGGCATGGAGCTGATCTCAACGATCCTCTCAGGAGCGCCAAATGCCTCGTCAGTTCTCCTCCCCTCGTCCGAAGGGTACATTTGGACTACCTTGATGCTGGAGCAAACATCATAATAACCGCATCTTATCACGCCACAATTCAGGGTTTTGAGGCCAAAGGTTTCTCTAAAGAAGAAGCCAAAGCCCTGCTCAGGAAAAGTGTAGAAATTGCAATTGAGGCACGAGAAATTTACTTTGACAAATGCACCAAAGGTTCTTGGGATTTTGTGGATGCAGGAAAGCCTTCAAGACATCCAGTTCTAGCATATGCTGAACTTCTTGAGGAAGAAGCAATAGATATTCCAGCATGGTTTACTTTTGCTTCTAAAGATGGAATTGATGTGGTGAGTGGTGATTCCATCTTTGAGTGTGCCTCTATTGCTAATGCATGCAAGCAAGTTGTTGCTGTTGGAATCAACTGCACACCACCTAGATTTATCCAGGGGTTGAATTCATCTATTCGAAAGGTAACAAGCAAACCAATAGTGATATACCCCAACAGTGGTGAGACCTATGATGGTCAGAGCAAGCAATGGATTCCATCGAGTGGGCGGGTTGATGAAGAGTTTGCAGAAATAGTCATAGAGAAGTGGCGTGAGGCAGGGGCTTCCCTGTTTGGAGGCTGCTGCAGAACAACTCCAAATACCATAAGGGCAATATCTAAGGCTCTTTCCAACAAGTCTTCTGCGGTTAACGATGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko01110 map00270 map01100 map01110

Pfam Domains

Protein Families

S-methyl_trans

Protein Analysis

282

Amino Acids

30.58

Weight (kDa)

5.54

Isoelectric Point (pI)

46.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S-methyl_trans	PF02574	25 - 113	5.9e-21	Homocysteine S-methyltransferase
S-methyl_trans	PF02574	136 - 272	3.3e-27	Homocysteine S-methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002729)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22740
fragaria_vesca	FvH4_4g00800 FvH4_4g00800 FvH4_4g00800
malus_domestica	MD00G1181400.v1.1
prunus_persica	Prupe.1G018900_v2.0.a1 Prupe.1G018900_v2.0.a1 Prupe.1G018900_v2.0.a1
pyrus_communis	pycom13g17110
rosa_chinensis	RchiOBHm_Chr4g0386691 RchiOBHm_Chr4g0386711 RchiOBHm_Chr4g0386841 RchiOBHm_Chr4g0386961 RchiOBHm_Chr4g0386981 RchiOBHm_Chr4g0387271 RchiOBHm_Chr4g0387331 RchiOBHm_Chr4g0387351 RchiOBHm_Chr4g0387451 RchiOBHm_Chr7g0204331
rosa_multiflora	Rmu_sc0000013.1_g000020 Rmu_sc0000013.1_g000025 Rmu_sc0001317.1_g000013 Rmu_sc0001395.1_g000003 Rmu_sc0001942.1_g000050 Rmu_sc0006571.1_g000023 Rmu_sc0006648.1_g000005 Rmu_sc0027325.1_g000001
rosa_roxburghii	Rroxscaffold_5G00334040 Rroxscaffold_5G00334070
rosa_rugosa	Rorug03G0308800 Rorug03G0309400 Rorug03G0323000
rosa_samantha	Rh1DG032500 Rh4AG015400 Rh4DG011100
rosa_wichuraiana	Rw4G000880 Rw4G000920 Rw4G000950 Rw4G001260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	75
AccB7I	CCANNNNNTGG	1 cut(s)	692
AciI	CCGC	4 cut(s)	60, 225, 697, 833
AclWI	GGATC	1 cut(s)	122
AcsI	RAATTY	2 cut(s)	333, 595
AfaI	GTAC	1 cut(s)	183
AfiI	CCNNNNNNNGG	3 cut(s)	297, 647, 692
AgsI	TTSAA	2 cut(s)	393, 595
AjnI	CCWGG	1 cut(s)	585
AluBI	AGCT	2 cut(s)	100, 116
AluI	AGCT	2 cut(s)	100, 116
Alw26I	GTCTC	1 cut(s)	647
AlwI	GGATC	1 cut(s)	122
AoxI	GGCC	1 cut(s)	258
ApeKI	GCWGC	2 cut(s)	768, 771
ApoI	RAATTY	2 cut(s)	333, 595
ArsI	GACNNNNNNTTYG	4 cut(s)	71, 103, 138, 170
Asp700I	GAANNNNTTC	1 cut(s)	388
AspLEI	GCGC	1 cut(s)	143
AsuHPI	GGTGA	4 cut(s)	31, 502, 509, 662
AsuII	TTCGAA	1 cut(s)	607
BaeGI	GKGCMC	1 cut(s)	73
BauI	CACGAG	1 cut(s)	327
BbsI	GAAGAC	1 cut(s)	819
BbvI	GCAGC	2 cut(s)	755, 758
BccI	CCATC	4 cut(s)	470, 512, 656, 694
BceAI	ACGGC	2 cut(s)	97, 122
BciT130I	CCWGG	1 cut(s)	587
BcoDI	GTCTC	1 cut(s)	647
BfaI	CTAG	2 cut(s)	407, 576
BfmI	CTRYAG	1 cut(s)	772
BfoI	RGCGCY	1 cut(s)	144
BfuAI	ACCTGC	1 cut(s)	75
BisI	GCNGC	2 cut(s)	769, 772
BlsI	GCNGC	2 cut(s)	770, 773
Bme1390I	CCNGG	1 cut(s)	587
BmrFI	CCNGG	1 cut(s)	587
BmsI	GCATC	4 cut(s)	190, 236, 367, 832
BpiI	GAAGAC	1 cut(s)	819
BplI	GAGNNNNNCTC	4 cut(s)	105, 137, 503, 535
BpmI	CTGGAG	2 cut(s)	71, 225
Bpu10I	CCTNAGC	1 cut(s)	296
Bpu14I	TTCGAA	1 cut(s)	607
BpuEI	CTTGAG	1 cut(s)	446
BsaI	GGTCTC	1 cut(s)	647
BsaJI	CCNNGG	1 cut(s)	586
Bsc4I	CCNNNNNNNGG	3 cut(s)	297, 647, 692
Bse1I	ACTGG	1 cut(s)	401
Bse3DI	GCAATG	1 cut(s)	683
BseBI	CCWGG	1 cut(s)	587
BseDI	CCNNGG	1 cut(s)	586
BseGI	GGATG	2 cut(s)	382, 397
BseLI	CCNNNNNNNGG	3 cut(s)	297, 647, 692
BseMI	GCAATG	1 cut(s)	683
BseMII	CTCAG	2 cut(s)	148, 310
BseNI	ACTGG	1 cut(s)	401
BseRI	GAGGAG	1 cut(s)	153
BseSI	GKGCMC	1 cut(s)	73
BseXI	GCAGC	2 cut(s)	755, 758
BsgI	GTGCAG	1 cut(s)	550
BshFI	GGCC	1 cut(s)	260
BslI	CCNNNNNNNGG	3 cut(s)	297, 647, 692
BsmAI	GTCTC	1 cut(s)	647
BsnI	GGCC	1 cut(s)	260
Bso31I	GGTCTC	1 cut(s)	647
Bsp119I	TTCGAA	1 cut(s)	607
Bsp1286I	GDGCHC	1 cut(s)	73
Bsp143I	GATC	2 cut(s)	118, 127
BspACI	CCGC	4 cut(s)	60, 225, 697, 833
BspANI	GGCC	1 cut(s)	260
BspCNI	CTCAG	2 cut(s)	147, 309
BspHI	TCATGA	1 cut(s)	36
BspMAI	CTGCAG	1 cut(s)	776
BspMI	ACCTGC	1 cut(s)	75
BspPI	GGATC	1 cut(s)	122
BspT104I	TTCGAA	1 cut(s)	607
BspTNI	GGTCTC	1 cut(s)	647
BsrDI	GCAATG	1 cut(s)	683
BsrI	ACTGG	1 cut(s)	401
BssECI	CCNNGG	1 cut(s)	586
BssMI	GATC	2 cut(s)	118, 127
BssSI	CACGAG	1 cut(s)	327
Bst2BI	CACGAG	1 cut(s)	327
Bst2UI	CCWGG	1 cut(s)	587
Bst4CI	ACNGT	1 cut(s)	647
Bst6I	CTCTTC	1 cut(s)	702
BstBI	TTCGAA	1 cut(s)	607
BstC8I	GCNNGC	3 cut(s)	535, 539, 674
BstDEI	CTNAG	4 cut(s)	134, 296, 807, 846
BstF5I	GGATG	2 cut(s)	382, 397
BstH2I	RGCGCY	1 cut(s)	144
BstHHI	GCGC	1 cut(s)	143
BstKTI	GATC	2 cut(s)	121, 130
BstMAI	GTCTC	1 cut(s)	647
BstMBI	GATC	2 cut(s)	118, 127
BstMWI	GCNNNNNNNGC	4 cut(s)	106, 147, 323, 524
BstNI	CCWGG	1 cut(s)	587
BstNSI	RCATGY	1 cut(s)	537
BstSCI	CCNGG	1 cut(s)	585
BstSFI	CTRYAG	1 cut(s)	772
BstSLI	GKGCMC	1 cut(s)	73
BstV1I	GCAGC	2 cut(s)	755, 758
BstV2I	GAAGAC	1 cut(s)	819
BsuRI	GGCC	1 cut(s)	260
BtsCI	GGATG	2 cut(s)	382, 397
BtsIMutI	CAGTG	1 cut(s)	652
BveI	ACCTGC	1 cut(s)	75
Cac8I	GCNNGC	3 cut(s)	535, 539, 674
CciI	TCATGA	1 cut(s)	36
CfoI	GCGC	1 cut(s)	143
Csp6I	GTAC	1 cut(s)	182
CviAII	CATG	4 cut(s)	37, 110, 453, 534
CviQI	GTAC	1 cut(s)	182
DdeI	CTNAG	4 cut(s)	134, 296, 807, 846
DpnI	GATC	2 cut(s)	120, 129
DpnII	GATC	2 cut(s)	118, 127
Eam1104I	CTCTTC	1 cut(s)	702
EarI	CTCTTC	1 cut(s)	702
Eco31I	GGTCTC	1 cut(s)	647
EcoRI	GAATTC	1 cut(s)	595
EcoRII	CCWGG	1 cut(s)	585
EcoT22I	ATGCAT	1 cut(s)	535
FaeI	CATG	4 cut(s)	40, 113, 456, 537
FatI	CATG	4 cut(s)	36, 109, 452, 533
FauI	CCCGC	1 cut(s)	690
FauNDI	CATATG	1 cut(s)	412
Fnu4HI	GCNGC	2 cut(s)	769, 772
FokI	GGATG	2 cut(s)	384, 389
Fsp4HI	GCNGC	2 cut(s)	769, 772
FspBI	CTAG	2 cut(s)	407, 576
GlaI	GCGC	1 cut(s)	142
GluI	GCNGC	2 cut(s)	769, 772
GsuI	CTGGAG	2 cut(s)	71, 225
HaeII	RGCGCY	1 cut(s)	144
HaeIII	GGCC	1 cut(s)	260
HhaI	GCGC	1 cut(s)	143
Hin1II	CATG	4 cut(s)	40, 113, 456, 537
Hin6I	GCGC	1 cut(s)	141
HinP1I	GCGC	1 cut(s)	141
HincII	GTYRAC	1 cut(s)	838
HindII	GTYRAC	1 cut(s)	838
HinfI	GANTC	3 cut(s)	500, 558, 682
HpaI	GTTAAC	1 cut(s)	838
HphI	GGTGA	4 cut(s)	31, 502, 509, 662
Hpy166II	GTNNAC	2 cut(s)	459, 838
Hpy188I	TCNGA	2 cut(s)	176, 669
Hpy188III	TCNNGA	7 cut(s)	37, 50, 77, 136, 298, 393, 425
Hpy8I	GTNNAC	2 cut(s)	459, 838
Hpy99I	CGWCG	3 cut(s)	31, 34, 97
HpyAV	CCTTC	3 cut(s)	83, 171, 399
HpyCH4III	ACNGT	1 cut(s)	647
HpyCH4IV	ACGT	1 cut(s)	26
HpyCH4V	TGCA	8 cut(s)	317, 351, 380, 533, 537, 567, 716, 774
HpyF10VI	GCNNNNNNNGC	4 cut(s)	106, 147, 323, 524
HpyF3I	CTNAG	4 cut(s)	134, 296, 807, 846
HpySE526I	ACGT	1 cut(s)	26
Hsp92II	CATG	4 cut(s)	40, 113, 456, 537
HspAI	GCGC	1 cut(s)	141
KspAI	GTTAAC	1 cut(s)	838
Kzo9I	GATC	2 cut(s)	118, 127
LmnI	GCTCC	4 cut(s)	97, 113, 138, 206
Lsp1109I	GCAGC	2 cut(s)	755, 758
LweI	GCATC	4 cut(s)	190, 236, 367, 832
MaeI	CTAG	2 cut(s)	407, 576
MaeII	ACGT	1 cut(s)	26
MaeIII	GTNAC	1 cut(s)	613
MalI	GATC	2 cut(s)	120, 129
MboI	GATC	2 cut(s)	118, 127
MboII	GAAGA	4 cut(s)	290, 443, 719, 819
MfeI	CAATTG	1 cut(s)	318
MhlI	GDGCHC	1 cut(s)	73
MluCI	AATT	6 cut(s)	243, 312, 318, 333, 480, 595
MmeI	TCCRAC	2 cut(s)	535, 843
Mph1103I	ATGCAT	1 cut(s)	535
MroXI	GAANNNNTTC	1 cut(s)	388
MseI	TTAA	1 cut(s)	837
MspR9I	CCNGG	1 cut(s)	587
MunI	CAATTG	1 cut(s)	318
MvaI	CCWGG	1 cut(s)	587
MwoI	GCNNNNNNNGC	4 cut(s)	106, 147, 323, 524
NdeI	CATATG	1 cut(s)	412
NdeII	GATC	2 cut(s)	118, 127
NlaIII	CATG	4 cut(s)	40, 113, 456, 537
NsiI	ATGCAT	1 cut(s)	535
NspI	RCATGY	1 cut(s)	537
NspV	TTCGAA	1 cut(s)	607
PaeI	GCATGC	1 cut(s)	537
PagI	TCATGA	1 cut(s)	36
PdmI	GAANNNNTTC	1 cut(s)	388
PfeI	GAWTC	3 cut(s)	500, 558, 682
PflMI	CCANNNNNTGG	1 cut(s)	692
PkrI	GCNGC	2 cut(s)	770, 773
Psp6I	CCWGG	1 cut(s)	585
PspGI	CCWGG	1 cut(s)	585
PstI	CTGCAG	1 cut(s)	776
RsaI	GTAC	1 cut(s)	183
RsaNI	GTAC	1 cut(s)	182
SaqAI	TTAA	1 cut(s)	837
SatI	GCNGC	2 cut(s)	769, 772
Sau3AI	GATC	2 cut(s)	118, 127
ScrFI	CCNGG	1 cut(s)	587
SduI	GDGCHC	1 cut(s)	73
SfaNI	GCATC	4 cut(s)	190, 236, 367, 832
SfcI	CTRYAG	1 cut(s)	772
SfuI	TTCGAA	1 cut(s)	607
SmlI	CTYRAG	1 cut(s)	425
SmoI	CTYRAG	1 cut(s)	425
SphI	GCATGC	1 cut(s)	537
Sse9I	AATT	6 cut(s)	243, 312, 318, 333, 480, 595
SsiI	CCGC	4 cut(s)	60, 225, 697, 833
SspMI	CTAG	2 cut(s)	407, 576
StyD4I	CCNGG	1 cut(s)	585
TaaI	ACNGT	1 cut(s)	647
TaiI	ACGT	1 cut(s)	29
TaqI	TCGA	2 cut(s)	607, 689
TasI	AATT	6 cut(s)	243, 312, 318, 333, 480, 595
TfiI	GAWTC	3 cut(s)	500, 558, 682
Tru1I	TTAA	1 cut(s)	837
Tru9I	TTAA	1 cut(s)	837
TscAI	CASTG	1 cut(s)	652
TseI	GCWGC	2 cut(s)	768, 771
TspDTI	ATGAA	3 cut(s)	25, 588, 720
TspGWI	ACGGA	1 cut(s)	110
TspRI	CASTG	1 cut(s)	652
Van91I	CCANNNNNTGG	1 cut(s)	692
XapI	RAATTY	2 cut(s)	333, 595
XceI	RCATGY	1 cut(s)	537
XmnI	GAANNNNTTC	1 cut(s)	388
XspI	CTAG	2 cut(s)	407, 576
Zsp2I	ATGCAT	1 cut(s)	535

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.