Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001317.1

Orthogroup ID

OG0002729

Physical Location & Seq

Genomic Coordinates Forward (+)

33583 .. 35420

Gene Structure 1838 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001317.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

atgtgtgctgaccttcgtgaggaagaagaattgtttttcattgtgtctaaggatggaattgatactggccccttctctaggcatcttcctgcaatccaaagcgaggcagaagcttgtagggtaggcttgcttgtgggtattcaccagaattggagacatgttgaggtagaaagtgattgtgctcagttgcttgctgtgctgaatcttcaaggggaggataactctgaagttagtcgaatactgattggaaagccttcaagatatccagttctagttgcggcatctgtgggaagctatggagcctatttggctgatggttccgagtatagtggcaactgtggcgatgctgtgactctagaagcattgaaagatttccacagggaaagggttcagattctggccaactctgttgctcatctaattgcatttgagacgacagcgaataaattagaggcaaagtccgctgaacttcttgaggaggaagcattagatattccagcatggtttacttttgcttctaaagttggaatcagtgtggtgagtggtgattccatttttgagtgtgcctctattgctaatgtgtggaagcaagttgttgttgttggaatctactgtacattgccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko01110 map00270 map01100 map01110

Pfam Domains

Protein Families

S-methyl_trans

Protein Analysis

208

Amino Acids

22.57

Weight (kDa)

4.62

Isoelectric Point (pI)

38.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002729)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22740
fragaria_vesca	FvH4_4g00800 FvH4_4g00800 FvH4_4g00800
malus_domestica	MD00G1181400.v1.1
prunus_persica	Prupe.1G018900_v2.0.a1 Prupe.1G018900_v2.0.a1 Prupe.1G018900_v2.0.a1
pyrus_communis	pycom13g17110
rosa_chinensis	RchiOBHm_Chr4g0386691 RchiOBHm_Chr4g0386711 RchiOBHm_Chr4g0386841 RchiOBHm_Chr4g0386961 RchiOBHm_Chr4g0386981 RchiOBHm_Chr4g0387271 RchiOBHm_Chr4g0387331 RchiOBHm_Chr4g0387351 RchiOBHm_Chr4g0387451 RchiOBHm_Chr7g0204331
rosa_multiflora	Rmu_sc0000013.1_g000020 Rmu_sc0000013.1_g000025 Rmu_sc0001317.1_g000013 Rmu_sc0001395.1_g000003 Rmu_sc0001942.1_g000050 Rmu_sc0006571.1_g000023 Rmu_sc0006648.1_g000005 Rmu_sc0027325.1_g000001
rosa_roxburghii	Rroxscaffold_5G00334040 Rroxscaffold_5G00334070
rosa_rugosa	Rorug03G0308800 Rorug03G0309400 Rorug03G0323000
rosa_samantha	Rh1DG032500 Rh4AG015400 Rh4DG011100
rosa_wichuraiana	Rw4G000880 Rw4G000920 Rw4G000950 Rw4G001260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	278, 462
AcoI	YGGCCR	1 cut(s)	399
AcuI	CTGAAG	1 cut(s)	246
AfaI	GTAC	1 cut(s)	616
AfiI	CCNNNNNNNGG	3 cut(s)	19, 78, 103
AflIII	ACRYGT	1 cut(s)	157
AgsI	TTSAA	3 cut(s)	209, 258, 367
AluBI	AGCT	2 cut(s)	113, 294
AluI	AGCT	2 cut(s)	113, 294
Alw21I	GWGCWC	1 cut(s)	184
Alw26I	GTCTC	2 cut(s)	148, 425
AlwNI	CAGNNNCTG	1 cut(s)	397
AoxI	GGCC	2 cut(s)	67, 399
Asp700I	GAANNNNTTC	3 cut(s)	253, 371, 387
AspS9I	GGNCC	1 cut(s)	68
AsuHPI	GGTGA	3 cut(s)	134, 550, 557
BalI	TGGCCA	1 cut(s)	401
Bbv12I	GWGCWC	1 cut(s)	184
BccI	CCATC	2 cut(s)	47, 308
BcoDI	GTCTC	2 cut(s)	148, 425
BfaI	CTAG	3 cut(s)	78, 272, 356
BglI	GCCNNNNNGGC	1 cut(s)	308
BisI	GCNGC	1 cut(s)	279
BlsI	GCNGC	1 cut(s)	280
BmgT120I	GGNCC	1 cut(s)	68
BmiI	GGNNCC	3 cut(s)	70, 301, 319
BmsI	GCATC	3 cut(s)	91, 290, 334
BplI	GAGNNNNNCTC	4 cut(s)	206, 238, 551, 583
BpuEI	CTTGAG	1 cut(s)	494
Bsc4I	CCNNNNNNNGG	3 cut(s)	19, 78, 103
Bse1I	ACTGG	2 cut(s)	70, 266
Bse3DI	GCAATG	1 cut(s)	617
BseGI	GGATG	1 cut(s)	58
BseLI	CCNNNNNNNGG	3 cut(s)	19, 78, 103
BseMI	GCAATG	1 cut(s)	617
BseMII	CTCAG	1 cut(s)	197
BseNI	ACTGG	2 cut(s)	70, 266
BseRI	GAGGAG	1 cut(s)	491
BshFI	GGCC	2 cut(s)	69, 401
BsiHKAI	GWGCWC	1 cut(s)	184
BslI	CCNNNNNNNGG	3 cut(s)	19, 78, 103
BsmAI	GTCTC	2 cut(s)	148, 425
BsmBI	CGTCTC	1 cut(s)	425
BsnI	GGCC	2 cut(s)	69, 401
Bsp1286I	GDGCHC	1 cut(s)	184
Bsp1407I	TGTACA	1 cut(s)	614
BspACI	CCGC	2 cut(s)	278, 462
BspANI	GGCC	2 cut(s)	69, 401
BspCNI	CTCAG	1 cut(s)	196
BspLI	GGNNCC	3 cut(s)	70, 301, 319
BsrDI	GCAATG	1 cut(s)	617
BsrGI	TGTACA	1 cut(s)	614
BsrI	ACTGG	2 cut(s)	70, 266
Bst4CI	ACNGT	2 cut(s)	338, 614
BstAUI	TGTACA	1 cut(s)	614
BstC8I	GCNNGC	2 cut(s)	128, 192
BstDEI	CTNAG	2 cut(s)	48, 183
BstENI	CCTNNNNNAGG	2 cut(s)	17, 76
BstF5I	GGATG	1 cut(s)	58
BstMAI	GTCTC	2 cut(s)	148, 425
BstMWI	GCNNNNNNNGC	5 cut(s)	196, 308, 339, 461, 572
BstNSI	RCATGY	1 cut(s)	161
BsuRI	GGCC	2 cut(s)	69, 401
BtgZI	GCGATG	1 cut(s)	357
BtsCI	GGATG	1 cut(s)	58
BtsIMutI	CAGTG	1 cut(s)	538
Cac8I	GCNNGC	2 cut(s)	128, 192
CaiI	CAGNNNCTG	1 cut(s)	397
Cfr13I	GGNCC	1 cut(s)	68
Csp6I	GTAC	1 cut(s)	615
CviAII	CATG	2 cut(s)	158, 501
CviJI	RGCY	8 cut(s)	69, 113, 126, 253, 294, 302, 311, 401
CviKI_1	RGCY	8 cut(s)	69, 113, 126, 253, 294, 302, 311, 401
CviQI	GTAC	1 cut(s)	615
DdeI	CTNAG	2 cut(s)	48, 183
EaeI	YGGCCR	1 cut(s)	399
Eco32I	GATATC	1 cut(s)	263
Eco57I	CTGAAG	1 cut(s)	246
EcoNI	CCTNNNNNAGG	2 cut(s)	17, 76
EcoRV	GATATC	1 cut(s)	263
Esp3I	CGTCTC	1 cut(s)	425
FaeI	CATG	2 cut(s)	161, 504
FaiI	YATR	4 cut(s)	159, 297, 327, 502
FatI	CATG	2 cut(s)	157, 500
Fnu4HI	GCNGC	1 cut(s)	279
FokI	GGATG	1 cut(s)	65
Fsp4HI	GCNGC	1 cut(s)	279
FspBI	CTAG	3 cut(s)	78, 272, 356
GluI	GCNGC	1 cut(s)	279
HaeIII	GGCC	2 cut(s)	69, 401
Hin1II	CATG	2 cut(s)	161, 504
HindIII	AAGCTT	1 cut(s)	111
HinfI	GANTC	6 cut(s)	202, 352, 394, 528, 548, 606
HphI	GGTGA	3 cut(s)	134, 550, 557
Hpy166II	GTNNAC	1 cut(s)	507
Hpy188I	TCNGA	3 cut(s)	226, 322, 393
Hpy188III	TCNNGA	4 cut(s)	17, 258, 356, 473
Hpy8I	GTNNAC	1 cut(s)	507
HpyAV	CCTTC	3 cut(s)	23, 82, 264
HpyCH4III	ACNGT	2 cut(s)	338, 614
HpyCH4V	TGCA	2 cut(s)	92, 425
HpyF10VI	GCNNNNNNNGC	5 cut(s)	196, 308, 339, 461, 572
HpyF3I	CTNAG	2 cut(s)	48, 183
Hsp92II	CATG	2 cut(s)	161, 504
LmnI	GCTCC	1 cut(s)	299
LpnPI	CCDG	7 cut(s)	51, 102, 158, 279, 364, 383, 510
LweI	GCATC	3 cut(s)	91, 290, 334
MaeI	CTAG	3 cut(s)	78, 272, 356
MaeIII	GTNAC	1 cut(s)	349
MboII	GAAGA	4 cut(s)	35, 38, 77, 197
MhlI	GDGCHC	1 cut(s)	184
MlsI	TGGCCA	1 cut(s)	401
MluCI	AATT	5 cut(s)	29, 57, 148, 420, 446
MluNI	TGGCCA	1 cut(s)	401
MlyI	GAGTC	1 cut(s)	346
MmeI	TCCRAC	2 cut(s)	505, 583
MnlI	CCTC	8 cut(s)	13, 97, 157, 208, 445, 469, 472, 577
Mox20I	TGGCCA	1 cut(s)	401
MroXI	GAANNNNTTC	3 cut(s)	253, 371, 387
MscI	TGGCCA	1 cut(s)	401
Msp20I	TGGCCA	1 cut(s)	401
MspA1I	CMGCKG	1 cut(s)	464
MwoI	GCNNNNNNNGC	5 cut(s)	196, 308, 339, 461, 572
NlaIII	CATG	2 cut(s)	161, 504
NlaIV	GGNNCC	3 cut(s)	70, 301, 319
NmuCI	GTSAC	1 cut(s)	349
NspI	RCATGY	1 cut(s)	161
PciI	ACATGT	1 cut(s)	157
PdmI	GAANNNNTTC	3 cut(s)	253, 371, 387
PfeI	GAWTC	5 cut(s)	202, 394, 528, 548, 606
PkrI	GCNGC	1 cut(s)	280
PleI	GAGTC	1 cut(s)	346
PpsI	GAGTC	1 cut(s)	346
PscI	ACATGT	1 cut(s)	157
PspN4I	GGNNCC	3 cut(s)	70, 301, 319
PspPI	GGNCC	1 cut(s)	68
PstNI	CAGNNNCTG	1 cut(s)	397
RsaI	GTAC	1 cut(s)	616
RsaNI	GTAC	1 cut(s)	615
SatI	GCNGC	1 cut(s)	279
Sau96I	GGNCC	1 cut(s)	68
SchI	GAGTC	1 cut(s)	346
SduI	GDGCHC	1 cut(s)	184
SetI	ASST	4 cut(s)	15, 115, 168, 296
SfaNI	GCATC	3 cut(s)	91, 290, 334
SmlI	CTYRAG	1 cut(s)	473
SmoI	CTYRAG	1 cut(s)	473
Sse9I	AATT	5 cut(s)	29, 57, 148, 420, 446
SsiI	CCGC	2 cut(s)	278, 462
SspMI	CTAG	3 cut(s)	78, 272, 356
TaaI	ACNGT	2 cut(s)	338, 614
TaqI	TCGA	1 cut(s)	235
TasI	AATT	5 cut(s)	29, 57, 148, 420, 446
TatI	WGTACW	1 cut(s)	614
TauI	GCSGC	1 cut(s)	281
TfiI	GAWTC	5 cut(s)	202, 394, 528, 548, 606
TscAI	CASTG	1 cut(s)	538
TseFI	GTSAC	1 cut(s)	349
Tsp45I	GTSAC	1 cut(s)	349
TspDTI	ATGAA	1 cut(s)	28
TspRI	CASTG	1 cut(s)	538
XagI	CCTNNNNNAGG	2 cut(s)	17, 76
XbaI	TCTAGA	1 cut(s)	355
XceI	RCATGY	1 cut(s)	161
XmnI	GAANNNNTTC	3 cut(s)	253, 371, 387
XspI	CTAG	3 cut(s)	78, 272, 356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.