Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006648.1

Orthogroup ID

OG0002729

Physical Location & Seq

Genomic Coordinates Forward (+)

30472 .. 31273

Gene Structure 802 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006648.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

atgtgcatcaagtcaaaaacaaatgggtttgggaagcgaggtgaaaacgtcgtcgttctgagcgattttatgaagaagtgcggtggctgtgctgttctggacggtgggtttgcgacggagctggaacgacatggaggtgatctcaacgaccctctctggagcgccaaatgcctcgtcagttctcctcaccttgtccgaaggccatcgagtgggcgggttgatgaagagtttgcagaaatagtcatagagaagtggcgtcaggctggggcttccctgtttggaggctgctgcagaactactccaaataccatgagggcatttccgaggctctttctaacaagtcttctgcagttagtgacagttgacttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko01110 map00270 map01100 map01110

Pfam Domains

Protein Families

S-methyl_trans

Protein Analysis

123

Amino Acids

13.48

Weight (kDa)

8.61

Isoelectric Point (pI)

37.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002729)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22740
fragaria_vesca	FvH4_4g00800 FvH4_4g00800 FvH4_4g00800
malus_domestica	MD00G1181400.v1.1
prunus_persica	Prupe.1G018900_v2.0.a1 Prupe.1G018900_v2.0.a1 Prupe.1G018900_v2.0.a1
pyrus_communis	pycom13g17110
rosa_chinensis	RchiOBHm_Chr4g0386691 RchiOBHm_Chr4g0386711 RchiOBHm_Chr4g0386841 RchiOBHm_Chr4g0386961 RchiOBHm_Chr4g0386981 RchiOBHm_Chr4g0387271 RchiOBHm_Chr4g0387331 RchiOBHm_Chr4g0387351 RchiOBHm_Chr4g0387451 RchiOBHm_Chr7g0204331
rosa_multiflora	Rmu_sc0000013.1_g000020 Rmu_sc0000013.1_g000025 Rmu_sc0001317.1_g000013 Rmu_sc0001395.1_g000003 Rmu_sc0001942.1_g000050 Rmu_sc0006571.1_g000023 Rmu_sc0006648.1_g000005 Rmu_sc0027325.1_g000001
rosa_roxburghii	Rroxscaffold_5G00334040 Rroxscaffold_5G00334070
rosa_rugosa	Rorug03G0308800 Rorug03G0309400 Rorug03G0323000
rosa_samantha	Rh1DG032500 Rh4AG015400 Rh4DG011100
rosa_wichuraiana	Rw4G000880 Rw4G000920 Rw4G000950 Rw4G001260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	209
AciI	CCGC	2 cut(s)	81, 214
AcyI	GRCGYC	1 cut(s)	256
AfiI	CCNNNNNNNGG	1 cut(s)	209
AluBI	AGCT	1 cut(s)	121
AluI	AGCT	1 cut(s)	121
AoxI	GGCC	1 cut(s)	200
ApeKI	GCWGC	2 cut(s)	285, 288
ArsI	GACNNNNNNTTYG	4 cut(s)	92, 124, 159, 191
AspLEI	GCGC	1 cut(s)	164
AsuHPI	GGTGA	3 cut(s)	53, 149, 179
BbsI	GAAGAC	1 cut(s)	335
BbvI	GCAGC	2 cut(s)	272, 275
BccI	CCATC	1 cut(s)	211
BfmI	CTRYAG	2 cut(s)	289, 347
BfoI	RGCGCY	1 cut(s)	165
BisI	GCNGC	2 cut(s)	286, 289
BlsI	GCNGC	2 cut(s)	287, 290
BmsI	GCATC	1 cut(s)	15
BpiI	GAAGAC	1 cut(s)	335
BplI	GAGNNNNNCTC	2 cut(s)	126, 158
BpmI	CTGGAG	1 cut(s)	178
BsaHI	GRCGYC	1 cut(s)	256
BsaJI	CCNNGG	1 cut(s)	323
Bsc4I	CCNNNNNNNGG	1 cut(s)	209
BseDI	CCNNGG	1 cut(s)	323
BseLI	CCNNNNNNNGG	1 cut(s)	209
BseMII	CTCAG	1 cut(s)	50
BseRI	GAGGAG	1 cut(s)	174
BseXI	GCAGC	2 cut(s)	272, 275
BseYI	CCCAGC	1 cut(s)	263
BshFI	GGCC	1 cut(s)	202
BslI	CCNNNNNNNGG	1 cut(s)	209
BsnI	GGCC	1 cut(s)	202
Bsp143I	GATC	1 cut(s)	139
BspACI	CCGC	2 cut(s)	81, 214
BspANI	GGCC	1 cut(s)	202
BspCNI	CTCAG	1 cut(s)	51
BspMAI	CTGCAG	2 cut(s)	293, 351
BssECI	CCNNGG	1 cut(s)	323
BssMI	GATC	1 cut(s)	139
BssNI	GRCGYC	1 cut(s)	256
Bst4CI	ACNGT	2 cut(s)	104, 361
Bst6I	CTCTTC	1 cut(s)	219
BstACI	GRCGYC	1 cut(s)	256
BstDEI	CTNAG	1 cut(s)	59
BstH2I	RGCGCY	1 cut(s)	165
BstHHI	GCGC	1 cut(s)	164
BstKTI	GATC	1 cut(s)	142
BstMBI	GATC	1 cut(s)	139
BstMWI	GCNNNNNNNGC	1 cut(s)	168
BstSFI	CTRYAG	2 cut(s)	289, 347
BstV1I	GCAGC	2 cut(s)	272, 275
BstV2I	GAAGAC	1 cut(s)	335
BsuRI	GGCC	1 cut(s)	202
CfoI	GCGC	1 cut(s)	164
CseI	GACGC	1 cut(s)	245
CviAII	CATG	2 cut(s)	131, 310
CviJI	RGCY	7 cut(s)	87, 121, 202, 263, 269, 285, 328
CviKI_1	RGCY	7 cut(s)	87, 121, 202, 263, 269, 285, 328
DdeI	CTNAG	1 cut(s)	59
DpnI	GATC	1 cut(s)	141
DpnII	GATC	1 cut(s)	139
Eam1104I	CTCTTC	1 cut(s)	219
EarI	CTCTTC	1 cut(s)	219
FaeI	CATG	2 cut(s)	134, 313
FaiI	YATR	4 cut(s)	71, 132, 245, 311
FatI	CATG	2 cut(s)	130, 309
FauI	CCCGC	1 cut(s)	207
Fnu4HI	GCNGC	2 cut(s)	286, 289
Fsp4HI	GCNGC	2 cut(s)	286, 289
GlaI	GCGC	1 cut(s)	163
GluI	GCNGC	2 cut(s)	286, 289
GsaI	CCCAGC	1 cut(s)	267
GsuI	CTGGAG	1 cut(s)	178
HaeII	RGCGCY	1 cut(s)	165
HaeIII	GGCC	1 cut(s)	202
HgaI	GACGC	1 cut(s)	245
HhaI	GCGC	1 cut(s)	164
Hin1I	GRCGYC	1 cut(s)	256
Hin1II	CATG	2 cut(s)	134, 313
Hin6I	GCGC	1 cut(s)	162
HinP1I	GCGC	1 cut(s)	162
HincII	GTYRAC	1 cut(s)	364
HindII	GTYRAC	1 cut(s)	364
HphI	GGTGA	3 cut(s)	53, 149, 179
Hpy166II	GTNNAC	1 cut(s)	364
Hpy188I	TCNGA	4 cut(s)	60, 197, 324, 371
Hpy188III	TCNNGA	2 cut(s)	98, 157
Hpy8I	GTNNAC	1 cut(s)	364
Hpy99I	CGWCG	3 cut(s)	53, 56, 118
HpyAV	CCTTC	1 cut(s)	192
HpyCH4III	ACNGT	2 cut(s)	104, 361
HpyCH4IV	ACGT	1 cut(s)	48
HpyCH4V	TGCA	4 cut(s)	6, 233, 291, 349
HpyF10VI	GCNNNNNNNGC	1 cut(s)	168
HpyF3I	CTNAG	1 cut(s)	59
HpySE526I	ACGT	1 cut(s)	48
Hsp92I	GRCGYC	1 cut(s)	256
Hsp92II	CATG	2 cut(s)	134, 313
HspAI	GCGC	1 cut(s)	162
Kzo9I	GATC	1 cut(s)	139
LmnI	GCTCC	2 cut(s)	118, 159
LpnPI	CCDG	6 cut(s)	83, 107, 142, 245, 249, 287
Lsp1109I	GCAGC	2 cut(s)	272, 275
LweI	GCATC	1 cut(s)	15
MaeII	ACGT	1 cut(s)	48
MaeIII	GTNAC	1 cut(s)	355
MalI	GATC	1 cut(s)	141
MboI	GATC	1 cut(s)	139
MboII	GAAGA	3 cut(s)	85, 236, 335
MnlI	CCTC	8 cut(s)	32, 128, 162, 182, 195, 275, 306, 318
MslI	CAYNNNNRTG	1 cut(s)	135
MwoI	GCNNNNNNNGC	1 cut(s)	168
NdeII	GATC	1 cut(s)	139
NlaIII	CATG	2 cut(s)	134, 313
NmuCI	GTSAC	1 cut(s)	355
PcsI	WCGNNNNNNNCGW	1 cut(s)	60
PflMI	CCANNNNNTGG	1 cut(s)	209
PkrI	GCNGC	2 cut(s)	287, 290
PspFI	CCCAGC	1 cut(s)	263
PstI	CTGCAG	2 cut(s)	293, 351
RseI	CAYNNNNRTG	1 cut(s)	135
SatI	GCNGC	2 cut(s)	286, 289
Sau3AI	GATC	1 cut(s)	139
SetI	ASST	5 cut(s)	43, 51, 123, 139, 192
SfaNI	GCATC	1 cut(s)	15
SfcI	CTRYAG	2 cut(s)	289, 347
SmiMI	CAYNNNNRTG	1 cut(s)	135
SsiI	CCGC	2 cut(s)	81, 214
TaaI	ACNGT	2 cut(s)	104, 361
TaiI	ACGT	1 cut(s)	51
TaqI	TCGA	1 cut(s)	206
TseFI	GTSAC	1 cut(s)	355
TseI	GCWGC	2 cut(s)	285, 288
Tsp45I	GTSAC	1 cut(s)	355
TspDTI	ATGAA	2 cut(s)	86, 237
TspGWI	ACGGA	1 cut(s)	131
Van91I	CCANNNNNTGG	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.