Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000013.1

Orthogroup ID

OG0002729

Physical Location & Seq

Genomic Coordinates Reverse (-)

106120 .. 111687

Gene Structure 5568 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000013.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

atgactatgaacagattctccaccgtgatcaaccgcgtctccgtcaccgattgcagctctcgctaccctcacccgtcgtcgcgccgtcacctagccaccctcacgccggaggcttgccgctgcttggtctggggaacttgcgttcaccgccgccaacgtgcaaaacctagcgagaaaacgtcgtcgttcatgagcgattttctggaaaagtgcggtggctgtgccattctggacggcgggtttgcgacggagctggaacgacatggagctgatctcaacgaccctctctggagcgccaaatgcctcgtcagttctcctcacctcgtccgtagggtacatttggactaccttgatgctggagcaaacatcataataaccgcatcttatcaggccacaattcagggttttgaggccaaaggtttctctaaagaagaagccaaagccctgctcaggaaaagtgtagaaattgcaatcgaggcacgagaaatttactatgacaaatgtaccaaaggttcttgggattttgtggacacaggaaagccttcaagacatccagttctagttgcagcatctgtgggaagctatggagcctatttggctgatggttccgagtatagtggcaactatggcgatgcagtaactctagaaacattgaaagatttccacagggaaagggttcagattctggccaactctggtgctgatctaattgcatttgagacaactccgaataagatagaggcgaaggcatatgctgaacttcttgaggaagaagcaatagatattccagcatggtttacttttgcttctaaagatggaatcaatgtggtgagtggtgattccatctttgagtgtgcctctattgctaatgcatgcaagcaagttgttgctgttggaatcaactgcacaccacctagatttatccaggggttgatttcatctattcggaaggtaacaagcaaaccaatagtgatataccccaacagtggtgagacctatgatggtcagagcaagcaatggattccatcgagtgggcgggttgatgaagagtttgcagaaatagtcgtagagaagtggcgtgaggcaggggcttccctgtttggaggctgctgcagaacaactccaaataccataagggcaatatctaaggctctttccaacaagtcttctgcggttaacgatgcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko01110 map00270 map01100 map01110

Pfam Domains

Protein Families

S-methyl_trans

Protein Analysis

395

Amino Acids

43.15

Weight (kDa)

6.47

Isoelectric Point (pI)

42.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002729)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22740
fragaria_vesca	FvH4_4g00800 FvH4_4g00800 FvH4_4g00800
malus_domestica	MD00G1181400.v1.1
prunus_persica	Prupe.1G018900_v2.0.a1 Prupe.1G018900_v2.0.a1 Prupe.1G018900_v2.0.a1
pyrus_communis	pycom13g17110
rosa_chinensis	RchiOBHm_Chr4g0386691 RchiOBHm_Chr4g0386711 RchiOBHm_Chr4g0386841 RchiOBHm_Chr4g0386961 RchiOBHm_Chr4g0386981 RchiOBHm_Chr4g0387271 RchiOBHm_Chr4g0387331 RchiOBHm_Chr4g0387351 RchiOBHm_Chr4g0387451 RchiOBHm_Chr7g0204331
rosa_multiflora	Rmu_sc0000013.1_g000020 Rmu_sc0000013.1_g000025 Rmu_sc0001317.1_g000013 Rmu_sc0001395.1_g000003 Rmu_sc0001942.1_g000050 Rmu_sc0006571.1_g000023 Rmu_sc0006648.1_g000005 Rmu_sc0027325.1_g000001
rosa_roxburghii	Rroxscaffold_5G00334040 Rroxscaffold_5G00334070
rosa_rugosa	Rorug03G0308800 Rorug03G0309400 Rorug03G0323000
rosa_samantha	Rh1DG032500 Rh4AG015400 Rh4DG011100
rosa_wichuraiana	Rw4G000880 Rw4G000920 Rw4G000950 Rw4G001260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1031
AccII	CGCG	2 cut(s)	36, 82
AciI	CCGC	9 cut(s)	34, 118, 148, 151, 213, 237, 378, 1036, 1172
AcoI	YGGCCR	1 cut(s)	687
AcsI	RAATTY	1 cut(s)	486
AfaI	GTAC	2 cut(s)	336, 505
AfiI	CCNNNNNNNGG	5 cut(s)	106, 124, 450, 986, 1031
AgsI	TTSAA	2 cut(s)	546, 655
AjnI	CCWGG	1 cut(s)	924
AloI	GAACNNNNNNTCC	3 cut(s)	34, 126, 158
AluBI	AGCT	4 cut(s)	57, 253, 269, 582
AluI	AGCT	4 cut(s)	57, 253, 269, 582
Alw26I	GTCTC	3 cut(s)	43, 713, 986
AlwNI	CAGNNNCTG	2 cut(s)	572, 685
AoxI	GGCC	3 cut(s)	390, 411, 687
ApeKI	GCWGC	5 cut(s)	54, 120, 566, 1107, 1110
ApoI	RAATTY	1 cut(s)	486
ArsI	GACNNNNNNTTYG	4 cut(s)	224, 256, 291, 323
Asp700I	GAANNNNTTC	4 cut(s)	14, 541, 659, 675
AspLEI	GCGC	2 cut(s)	84, 296
AsuHPI	GGTGA	8 cut(s)	37, 62, 80, 137, 311, 841, 848, 1001
BaeI	ACNNNNGTAYC	2 cut(s)	487, 520
BalI	TGGCCA	1 cut(s)	689
BauI	CACGAG	1 cut(s)	480
BbsI	GAAGAC	1 cut(s)	1158
BbvI	GCAGC	5 cut(s)	66, 107, 578, 1094, 1097
BccI	CCATC	5 cut(s)	596, 809, 851, 995, 1033
BceAI	ACGGC	2 cut(s)	69, 250
BciT130I	CCWGG	1 cut(s)	926
BclI	TGATCA	1 cut(s)	27
BcoDI	GTCTC	3 cut(s)	43, 713, 986
BfaI	CTAG	5 cut(s)	92, 168, 560, 644, 915
BfmI	CTRYAG	1 cut(s)	1111
BfoI	RGCGCY	1 cut(s)	297
BglI	GCCNNNNNGGC	1 cut(s)	596
BisI	GCNGC	7 cut(s)	55, 118, 121, 151, 567, 1108, 1111
BlsI	GCNGC	7 cut(s)	56, 119, 122, 152, 568, 1109, 1112
Bme1390I	CCNGG	1 cut(s)	926
BmiI	GGNNCC	2 cut(s)	589, 607
BmrFI	CCNGG	1 cut(s)	926
BmsI	GCATC	5 cut(s)	343, 389, 578, 622, 1171
BpiI	GAAGAC	1 cut(s)	1158
BplI	GAGNNNNNCTC	4 cut(s)	258, 290, 842, 874
BpmI	CTGGAG	2 cut(s)	310, 378
Bpu10I	CCTNAGC	1 cut(s)	449
BpuEI	CTTGAG	1 cut(s)	785
BsaI	GGTCTC	1 cut(s)	986
BsaJI	CCNNGG	1 cut(s)	925
BsaXI	ACNNNNNCTCC	3 cut(s)	23, 32, 53
Bsc4I	CCNNNNNNNGG	5 cut(s)	106, 124, 450, 986, 1031
Bse1I	ACTGG	1 cut(s)	554
Bse3DI	GCAATG	1 cut(s)	1022
BseBI	CCWGG	1 cut(s)	926
BseDI	CCNNGG	1 cut(s)	925
BseGI	GGATG	1 cut(s)	550
BseLI	CCNNNNNNNGG	5 cut(s)	106, 124, 450, 986, 1031
BseMI	GCAATG	1 cut(s)	1022
BseMII	CTCAG	1 cut(s)	463
BseNI	ACTGG	1 cut(s)	554
BseRI	GAGGAG	1 cut(s)	306
BseXI	GCAGC	5 cut(s)	66, 107, 578, 1094, 1097
BsgI	GTGCAG	1 cut(s)	889
Bsh1236I	CGCG	2 cut(s)	36, 82
BshFI	GGCC	3 cut(s)	392, 413, 689
BsiSI	CCGG	1 cut(s)	107
BslI	CCNNNNNNNGG	5 cut(s)	106, 124, 450, 986, 1031
BsmAI	GTCTC	3 cut(s)	43, 713, 986
BsmBI	CGTCTC	1 cut(s)	43
BsnI	GGCC	3 cut(s)	392, 413, 689
Bso31I	GGTCTC	1 cut(s)	986
Bsp143I	GATC	3 cut(s)	27, 271, 703
BspACI	CCGC	9 cut(s)	34, 118, 148, 151, 213, 237, 378, 1036, 1172
BspANI	GGCC	3 cut(s)	392, 413, 689
BspCNI	CTCAG	1 cut(s)	462
BspFNI	CGCG	2 cut(s)	36, 82
BspHI	TCATGA	1 cut(s)	189
BspLI	GGNNCC	2 cut(s)	589, 607
BspMAI	CTGCAG	1 cut(s)	1115
BspTNI	GGTCTC	1 cut(s)	986
BsrDI	GCAATG	1 cut(s)	1022
BsrI	ACTGG	1 cut(s)	554
BssECI	CCNNGG	1 cut(s)	925
BssMI	GATC	3 cut(s)	27, 271, 703
BssSI	CACGAG	1 cut(s)	480
Bst2BI	CACGAG	1 cut(s)	480
Bst2UI	CCWGG	1 cut(s)	926
Bst4CI	ACNGT	2 cut(s)	25, 986
Bst6I	CTCTTC	1 cut(s)	1041
BstC8I	GCNNGC	4 cut(s)	115, 874, 878, 1013
BstDEI	CTNAG	3 cut(s)	449, 1146, 1185
BstF5I	GGATG	1 cut(s)	550
BstFNI	CGCG	2 cut(s)	36, 82
BstH2I	RGCGCY	1 cut(s)	297
BstHHI	GCGC	2 cut(s)	84, 296
BstKTI	GATC	3 cut(s)	30, 274, 706
BstMAI	GTCTC	3 cut(s)	43, 713, 986
BstMBI	GATC	3 cut(s)	27, 271, 703
BstMWI	GCNNNNNNNGC	7 cut(s)	60, 147, 300, 476, 596, 627, 863
BstNI	CCWGG	1 cut(s)	926
BstNSI	RCATGY	1 cut(s)	876
BstSCI	CCNGG	1 cut(s)	924
BstSFI	CTRYAG	1 cut(s)	1111
BstUI	CGCG	2 cut(s)	36, 82
BstV1I	GCAGC	5 cut(s)	66, 107, 578, 1094, 1097
BstV2I	GAAGAC	1 cut(s)	1158
BsuRI	GGCC	3 cut(s)	392, 413, 689
BtgZI	GCGATG	1 cut(s)	645
BtsCI	GGATG	1 cut(s)	550
BtsIMutI	CAGTG	1 cut(s)	991
Cac8I	GCNNGC	4 cut(s)	115, 874, 878, 1013
CaiI	CAGNNNCTG	2 cut(s)	572, 685
CciI	TCATGA	1 cut(s)	189
CfoI	GCGC	2 cut(s)	84, 296
CseI	GACGC	1 cut(s)	25
Csp6I	GTAC	2 cut(s)	335, 504
CviAII	CATG	4 cut(s)	190, 263, 792, 873
CviQI	GTAC	2 cut(s)	335, 504
DdeI	CTNAG	3 cut(s)	449, 1146, 1185
DpnI	GATC	3 cut(s)	29, 273, 705
DpnII	GATC	3 cut(s)	27, 271, 703
EaeI	YGGCCR	1 cut(s)	687
Eam1104I	CTCTTC	1 cut(s)	1041
EarI	CTCTTC	1 cut(s)	1041
Eco31I	GGTCTC	1 cut(s)	986
EcoRII	CCWGG	1 cut(s)	924
EcoT22I	ATGCAT	1 cut(s)	874
Esp3I	CGTCTC	1 cut(s)	43
FaeI	CATG	4 cut(s)	193, 266, 795, 876
FatI	CATG	4 cut(s)	189, 262, 791, 872
FauI	CCCGC	2 cut(s)	230, 1029
FauNDI	CATATG	1 cut(s)	751
FbaI	TGATCA	1 cut(s)	27
Fnu4HI	GCNGC	7 cut(s)	55, 118, 121, 151, 567, 1108, 1111
FokI	GGATG	1 cut(s)	537
Fsp4HI	GCNGC	7 cut(s)	55, 118, 121, 151, 567, 1108, 1111
FspBI	CTAG	5 cut(s)	92, 168, 560, 644, 915
GlaI	GCGC	2 cut(s)	83, 295
GluI	GCNGC	7 cut(s)	55, 118, 121, 151, 567, 1108, 1111
GsuI	CTGGAG	2 cut(s)	310, 378
HaeII	RGCGCY	1 cut(s)	297
HaeIII	GGCC	3 cut(s)	392, 413, 689
HapII	CCGG	1 cut(s)	107
HgaI	GACGC	1 cut(s)	25
HhaI	GCGC	2 cut(s)	84, 296
Hin1II	CATG	4 cut(s)	193, 266, 795, 876
Hin6I	GCGC	2 cut(s)	82, 294
HinP1I	GCGC	2 cut(s)	82, 294
HincII	GTYRAC	1 cut(s)	1177
HindII	GTYRAC	1 cut(s)	1177
HinfI	GANTC	6 cut(s)	15, 682, 819, 839, 897, 1021
HpaI	GTTAAC	1 cut(s)	1177
HpaII	CCGG	1 cut(s)	107
HphI	GGTGA	8 cut(s)	37, 62, 80, 137, 311, 841, 848, 1001
Hpy166II	GTNNAC	4 cut(s)	145, 529, 798, 1177
Hpy188I	TCNGA	5 cut(s)	610, 681, 729, 948, 1008
Hpy188III	TCNNGA	8 cut(s)	190, 203, 230, 289, 451, 546, 644, 764
Hpy8I	GTNNAC	4 cut(s)	145, 529, 798, 1177
Hpy99I	CGWCG	5 cut(s)	79, 82, 184, 187, 250
HpyAV	CCTTC	3 cut(s)	552, 739, 943
HpyCH4III	ACNGT	2 cut(s)	25, 986
HpyCH4IV	ACGT	2 cut(s)	157, 179
HpyF10VI	GCNNNNNNNGC	7 cut(s)	60, 147, 300, 476, 596, 627, 863
HpyF3I	CTNAG	3 cut(s)	449, 1146, 1185
HpySE526I	ACGT	2 cut(s)	157, 179
Hsp92II	CATG	4 cut(s)	193, 266, 795, 876
HspAI	GCGC	2 cut(s)	82, 294
Ksp22I	TGATCA	1 cut(s)	27
KspAI	GTTAAC	1 cut(s)	1177
Kzo9I	GATC	3 cut(s)	27, 271, 703
LmnI	GCTCC	5 cut(s)	250, 266, 291, 359, 587
Lsp1109I	GCAGC	5 cut(s)	66, 107, 578, 1094, 1097
LweI	GCATC	5 cut(s)	343, 389, 578, 622, 1171
MaeI	CTAG	5 cut(s)	92, 168, 560, 644, 915
MaeII	ACGT	2 cut(s)	157, 179
MaeIII	GTNAC	4 cut(s)	43, 86, 637, 952
MalI	GATC	3 cut(s)	29, 273, 705
MboI	GATC	3 cut(s)	27, 271, 703
MboII	GAAGA	4 cut(s)	443, 782, 1058, 1158
MlsI	TGGCCA	1 cut(s)	689
MluCI	AATT	4 cut(s)	396, 465, 486, 708
MluNI	TGGCCA	1 cut(s)	689
MmeI	TCCRAC	2 cut(s)	874, 1182
Mox20I	TGGCCA	1 cut(s)	689
Mph1103I	ATGCAT	1 cut(s)	874
MroXI	GAANNNNTTC	4 cut(s)	14, 541, 659, 675
MscI	TGGCCA	1 cut(s)	689
MseI	TTAA	1 cut(s)	1176
Msp20I	TGGCCA	1 cut(s)	689
MspA1I	CMGCKG	1 cut(s)	120
MspI	CCGG	1 cut(s)	107
MspR9I	CCNGG	1 cut(s)	926
MvaI	CCWGG	1 cut(s)	926
MvnI	CGCG	2 cut(s)	36, 82
MwoI	GCNNNNNNNGC	7 cut(s)	60, 147, 300, 476, 596, 627, 863
NdeI	CATATG	1 cut(s)	751
NdeII	GATC	3 cut(s)	27, 271, 703
NlaIII	CATG	4 cut(s)	193, 266, 795, 876
NlaIV	GGNNCC	2 cut(s)	589, 607
NmuCI	GTSAC	2 cut(s)	43, 86
NsiI	ATGCAT	1 cut(s)	874
NspI	RCATGY	1 cut(s)	876
PaeI	GCATGC	1 cut(s)	876
PagI	TCATGA	1 cut(s)	189
PdmI	GAANNNNTTC	4 cut(s)	14, 541, 659, 675
PfeI	GAWTC	6 cut(s)	15, 682, 819, 839, 897, 1021
PflMI	CCANNNNNTGG	1 cut(s)	1031
PkrI	GCNGC	7 cut(s)	56, 119, 122, 152, 568, 1109, 1112
Psp6I	CCWGG	1 cut(s)	924
PspGI	CCWGG	1 cut(s)	924
PspN4I	GGNNCC	2 cut(s)	589, 607
PsrI	GAACNNNNNNTAC	2 cut(s)	496, 528
PstI	CTGCAG	1 cut(s)	1115
PstNI	CAGNNNCTG	2 cut(s)	572, 685
RsaI	GTAC	2 cut(s)	336, 505
RsaNI	GTAC	2 cut(s)	335, 504
SaqAI	TTAA	1 cut(s)	1176
SatI	GCNGC	7 cut(s)	55, 118, 121, 151, 567, 1108, 1111
Sau3AI	GATC	3 cut(s)	27, 271, 703
ScrFI	CCNGG	1 cut(s)	926
SfaNI	GCATC	5 cut(s)	343, 389, 578, 622, 1171
SfcI	CTRYAG	1 cut(s)	1111
SmlI	CTYRAG	1 cut(s)	764
SmoI	CTYRAG	1 cut(s)	764
SphI	GCATGC	1 cut(s)	876
Sse9I	AATT	4 cut(s)	396, 465, 486, 708
SsiI	CCGC	9 cut(s)	34, 118, 148, 151, 213, 237, 378, 1036, 1172
SspMI	CTAG	5 cut(s)	92, 168, 560, 644, 915
StyD4I	CCNGG	1 cut(s)	924
TaaI	ACNGT	2 cut(s)	25, 986
TaiI	ACGT	2 cut(s)	160, 182
TaqI	TCGA	2 cut(s)	474, 1028
TasI	AATT	4 cut(s)	396, 465, 486, 708
TauI	GCSGC	2 cut(s)	120, 153
TfiI	GAWTC	6 cut(s)	15, 682, 819, 839, 897, 1021
Tru1I	TTAA	1 cut(s)	1176
Tru9I	TTAA	1 cut(s)	1176
TscAI	CASTG	1 cut(s)	991
TseFI	GTSAC	2 cut(s)	43, 86
TseI	GCWGC	5 cut(s)	54, 120, 566, 1107, 1110
Tsp45I	GTSAC	2 cut(s)	43, 86
TspDTI	ATGAA	4 cut(s)	23, 178, 927, 1059
TspGWI	ACGGA	3 cut(s)	31, 263, 317
TspRI	CASTG	1 cut(s)	991
Van91I	CCANNNNNTGG	1 cut(s)	1031
XapI	RAATTY	1 cut(s)	486
XbaI	TCTAGA	1 cut(s)	643
XceI	RCATGY	1 cut(s)	876
XmnI	GAANNNNTTC	4 cut(s)	14, 541, 659, 675
XspI	CTAG	5 cut(s)	92, 168, 560, 644, 915
Zsp2I	ATGCAT	1 cut(s)	874

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.