Rw4G001260

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0002729
Physical Location & Seq
Forward (+)
2309940 .. 2311697
1758 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G001260.1

Sequence Viewer

Length: 351 bp
ATGGTATCAAAACTGTTTGTACTTGTCCTCATTGTTGATCCTCAATTGATTCCAGTTGTAGGAGAATATCGGTGGTATCAGCTAGCTAGGAAATGCAAATTAAGTTGTAGCCTGGATTTGGCTAAATATCTTGCTTCAAGGCGATGCGGCAGGCATGTTCTGACCTTCTTGAGGAAGAAGAAATTGGTTTTCATTGTTTCTAAGGATGGAGTTGATGTTACGTGGGAACTACAAACTTTCACTTGGAATGGTAGCAGATTTGGGCAAGGTGGGGTACATACTGATCTAACTGAATTTGAGACGACTGCAAATAAATTAGAAGTAAAGCTAAAAGTTCTAGTCAGGCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

13.38

Weight (kDa)

9.79

Isoelectric Point (pI)

27.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 147
AclWI GGATC 1 cut(s) 32
AcsI RAATTY 1 cut(s) 293
AfaI GTAC 2 cut(s) 21, 276
AfiI CCNNNNNNNGG 3 cut(s) 59, 118, 171
AgsI TTSAA 1 cut(s) 138
AjnI CCWGG 1 cut(s) 111
AjuI GAANNNNNNNTTGG 2 cut(s) 167, 199
AluBI AGCT 3 cut(s) 82, 86, 328
AluI AGCT 3 cut(s) 82, 86, 328
Alw26I GTCTC 1 cut(s) 293
AlwI GGATC 1 cut(s) 32
ApoI RAATTY 1 cut(s) 293
AsuNHI GCTAGC 1 cut(s) 82
BccI CCATC 1 cut(s) 200
BciT130I CCWGG 1 cut(s) 113
BcoDI GTCTC 1 cut(s) 293
BfaI CTAG 3 cut(s) 83, 87, 338
BisI GCNGC 1 cut(s) 148
BlsI GCNGC 1 cut(s) 149
Bme1390I CCNGG 1 cut(s) 113
BmrFI CCNGG 1 cut(s) 113
BmsI GCATC 1 cut(s) 134
BmtI GCTAGC 1 cut(s) 86
BpuEI CTTGAG 1 cut(s) 190
BsaAI YACGTR 1 cut(s) 222
BsaXI ACNNNNNCTCC 2 cut(s) 201, 231
Bsc4I CCNNNNNNNGG 3 cut(s) 59, 118, 171
Bse1I ACTGG 1 cut(s) 53
BseBI CCWGG 1 cut(s) 113
BseGI GGATG 1 cut(s) 211
BseLI CCNNNNNNNGG 3 cut(s) 59, 118, 171
BseNI ACTGG 1 cut(s) 53
BslI CCNNNNNNNGG 3 cut(s) 59, 118, 171
BsmAI GTCTC 1 cut(s) 293
BsmBI CGTCTC 1 cut(s) 293
Bsp143I GATC 2 cut(s) 37, 283
BspACI CCGC 1 cut(s) 147
BspOI GCTAGC 1 cut(s) 86
BspPI GGATC 1 cut(s) 32
BsrI ACTGG 1 cut(s) 53
BssMI GATC 2 cut(s) 37, 283
Bst2UI CCWGG 1 cut(s) 113
Bst4CI ACNGT 1 cut(s) 15
BstBAI YACGTR 1 cut(s) 222
BstC8I GCNNGC 2 cut(s) 84, 152
BstDEI CTNAG 1 cut(s) 201
BstENI CCTNNNNNAGG 1 cut(s) 169
BstF5I GGATG 1 cut(s) 211
BstKTI GATC 2 cut(s) 40, 286
BstMAI GTCTC 1 cut(s) 293
BstMBI GATC 2 cut(s) 37, 283
BstNI CCWGG 1 cut(s) 113
BstNSI RCATGY 1 cut(s) 158
BstSCI CCNGG 1 cut(s) 111
BtgZI GCGATG 1 cut(s) 157
BtsCI GGATG 1 cut(s) 211
Cac8I GCNNGC 2 cut(s) 84, 152
Csp6I GTAC 2 cut(s) 20, 275
CviAII CATG 1 cut(s) 155
CviJI RGCY 5 cut(s) 82, 86, 111, 122, 328
CviKI_1 RGCY 5 cut(s) 82, 86, 111, 122, 328
CviQI GTAC 2 cut(s) 20, 275
DdeI CTNAG 1 cut(s) 201
DpnI GATC 2 cut(s) 39, 285
DpnII GATC 2 cut(s) 37, 283
EcoNI CCTNNNNNAGG 1 cut(s) 169
EcoRII CCWGG 1 cut(s) 111
Esp3I CGTCTC 1 cut(s) 293
FaeI CATG 1 cut(s) 158
FaiI YATR 2 cut(s) 156, 279
FatI CATG 1 cut(s) 154
Fnu4HI GCNGC 1 cut(s) 148
FokI GGATG 1 cut(s) 218
Fsp4HI GCNGC 1 cut(s) 148
FspBI CTAG 3 cut(s) 83, 87, 338
GluI GCNGC 1 cut(s) 148
Hin1II CATG 1 cut(s) 158
HinfI GANTC 1 cut(s) 49
Hpy188I TCNGA 1 cut(s) 162
Hpy188III TCNNGA 1 cut(s) 169
HpyAV CCTTC 1 cut(s) 175
HpyCH4III ACNGT 1 cut(s) 15
HpyCH4IV ACGT 1 cut(s) 221
HpyCH4V TGCA 2 cut(s) 96, 308
HpyF3I CTNAG 1 cut(s) 201
HpySE526I ACGT 1 cut(s) 221
Hsp92II CATG 1 cut(s) 158
Kzo9I GATC 2 cut(s) 37, 283
LpnPI CCDG 5 cut(s) 66, 98, 125, 136, 328
LweI GCATC 1 cut(s) 134
MaeI CTAG 3 cut(s) 83, 87, 338
MaeII ACGT 1 cut(s) 221
MaeIII GTNAC 1 cut(s) 217
MalI GATC 2 cut(s) 39, 285
MboI GATC 2 cut(s) 37, 283
MboII GAAGA 2 cut(s) 187, 190
MfeI CAATTG 1 cut(s) 44
MluCI AATT 5 cut(s) 44, 98, 182, 293, 314
MnlI CCTC 3 cut(s) 38, 51, 165
MseI TTAA 1 cut(s) 101
MspR9I CCNGG 1 cut(s) 113
MunI CAATTG 1 cut(s) 44
MvaI CCWGG 1 cut(s) 113
NdeII GATC 2 cut(s) 37, 283
NheI GCTAGC 1 cut(s) 82
NlaIII CATG 1 cut(s) 158
NspI RCATGY 1 cut(s) 158
PfeI GAWTC 1 cut(s) 49
PkrI GCNGC 1 cut(s) 149
Ppu21I YACGTR 1 cut(s) 222
Psp6I CCWGG 1 cut(s) 111
PspGI CCWGG 1 cut(s) 111
RsaI GTAC 2 cut(s) 21, 276
RsaNI GTAC 2 cut(s) 20, 275
SaqAI TTAA 1 cut(s) 101
SatI GCNGC 1 cut(s) 148
Sau3AI GATC 2 cut(s) 37, 283
ScrFI CCNGG 1 cut(s) 113
SetI ASST 6 cut(s) 84, 88, 167, 224, 271, 330
SfaNI GCATC 1 cut(s) 134
SmlI CTYRAG 1 cut(s) 169
SmoI CTYRAG 1 cut(s) 169
Sse9I AATT 5 cut(s) 44, 98, 182, 293, 314
SsiI CCGC 1 cut(s) 147
SspMI CTAG 3 cut(s) 83, 87, 338
StyD4I CCNGG 1 cut(s) 111
TaaI ACNGT 1 cut(s) 15
TaiI ACGT 1 cut(s) 224
TasI AATT 5 cut(s) 44, 98, 182, 293, 314
TatI WGTACW 1 cut(s) 19
TauI GCSGC 1 cut(s) 150
TfiI GAWTC 1 cut(s) 49
Tru1I TTAA 1 cut(s) 101
Tru9I TTAA 1 cut(s) 101
TspDTI ATGAA 1 cut(s) 181
XagI CCTNNNNNAGG 1 cut(s) 169
XapI RAATTY 1 cut(s) 293
XceI RCATGY 1 cut(s) 158
XspI CTAG 3 cut(s) 83, 87, 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.