Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0002729

Physical Location & Seq

Genomic Coordinates Reverse (-)

12835045 .. 12838622

Gene Structure 3578 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g17110.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGATTTAGGAAGCGAGGAAACGTCGTCGTTCCTGTCTGATTTCCTGGAAAAGTGTGGTGGCTATGCTGTCCTTGACGGCGGTTTTGCTACAGAGCTTGAACGGCATGGAGCTGACCTCAACGACCCTCTTTGGAGCGCCAAATGCCTTATCACTTCCCCTCACCTTGTTAGAAGGGTACACTTGGACTACCTTGACGCCGGTGCAAACATCATACTAACCGCATCTTATCAGGCCACCATTCAGGGCTTTGAGGCCAAAGGTTTCTCTAAGGAAGAAGCCAAAGATTTGCTAAGGAAAAGTGTTGAAATTGCAATTGAGGCGCGTGAAATTTACTATGATAAGTTTCAATCAAGACGTCCAGTTCTGGTTGCAGCATCTATCGGCAGCTATGGCGCTTACTTGGCTGATGGTTCCGAATATAGTGGGAACTATGGAGATGCGATAACTGTAGAAACATTGAAGGATTTCCACAGGGAAAGGGTACAGATTCTGGCCAATTCTGGTGCTGATCTGATCGCATTTGAGACGATTCCAAATAAGATAGAAGCAAAGGCATATGCTGAGCTTCTTGATGAAGAAGGAATAGAAATTCCAGCCTGGTTTTCCTTCGCTTCGAAGGATGGAATCAATGTGGTCAGCGGGGATTCCATTTTAGAATGTGCCTCCATTGCAGATTCATGCAAGAACGTTGTTGCTGTTGGAATCAACTGCACACCTCCTAGATTTATCTACGGACTGGTTTCATCTATTCGGAATGTTACAAACAAACCAATAGTGATATACCCTAACAGTGGTGAGGCTTATGATGGTCAGACCAAGCAATGGGTGAAATCGACTGGTGTGGTTGATGAAGAGTTTGCAGACATAGCCATAGACAAGTGGTGTGAGGCTGGGGCTTCTCTATTTGGAGGCTGCTGCAGGACTACTCCAAATACCATCAGAGCCATATCTAAAGCTCTCTCCAACAAGTCTTCTTCCATCGTTAATGATGATGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko01110 map00270 map01100 map01110

Pfam Domains

Protein Families

S-methyl_trans

Protein Analysis

334

Amino Acids

36.09

Weight (kDa)

4.7

Isoelectric Point (pI)

40.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002729)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22740
fragaria_vesca	FvH4_4g00800 FvH4_4g00800 FvH4_4g00800
malus_domestica	MD00G1181400.v1.1
prunus_persica	Prupe.1G018900_v2.0.a1 Prupe.1G018900_v2.0.a1 Prupe.1G018900_v2.0.a1
pyrus_communis	pycom13g17110
rosa_chinensis	RchiOBHm_Chr4g0386691 RchiOBHm_Chr4g0386711 RchiOBHm_Chr4g0386841 RchiOBHm_Chr4g0386961 RchiOBHm_Chr4g0386981 RchiOBHm_Chr4g0387271 RchiOBHm_Chr4g0387331 RchiOBHm_Chr4g0387351 RchiOBHm_Chr4g0387451 RchiOBHm_Chr7g0204331
rosa_multiflora	Rmu_sc0000013.1_g000020 Rmu_sc0000013.1_g000025 Rmu_sc0001317.1_g000013 Rmu_sc0001395.1_g000003 Rmu_sc0001942.1_g000050 Rmu_sc0006571.1_g000023 Rmu_sc0006648.1_g000005 Rmu_sc0027325.1_g000001
rosa_roxburghii	Rroxscaffold_5G00334040 Rroxscaffold_5G00334070
rosa_rugosa	Rorug03G0308800 Rorug03G0309400 Rorug03G0323000
rosa_samantha	Rh1DG032500 Rh4AG015400 Rh4DG011100
rosa_wichuraiana	Rw4G000880 Rw4G000920 Rw4G000950 Rw4G001260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	361
AccB7I	CCANNNNNTGG	1 cut(s)	825
AccII	CGCG	1 cut(s)	325
AciI	CCGC	3 cut(s)	81, 222, 642
AclI	AACGTT	1 cut(s)	690
AcoI	YGGCCR	1 cut(s)	495
AcsI	RAATTY	2 cut(s)	330, 591
AcyI	GRCGYC	2 cut(s)	198, 358
AfaI	GTAC	2 cut(s)	180, 486
AfiI	CCNNNNNNNGG	2 cut(s)	794, 825
AgsI	TTSAA	4 cut(s)	101, 308, 350, 463
AjnI	CCWGG	2 cut(s)	45, 599
AluBI	AGCT	5 cut(s)	97, 113, 390, 568, 959
AluI	AGCT	5 cut(s)	97, 113, 390, 568, 959
Alw26I	GTCTC	1 cut(s)	521
AlwNI	CAGNNNCTG	1 cut(s)	493
AoxI	GGCC	3 cut(s)	234, 255, 495
ApeKI	GCWGC	4 cut(s)	374, 387, 915, 918
ApoI	RAATTY	2 cut(s)	330, 591
ArsI	GACNNNNNNTTYG	2 cut(s)	68, 100
Asp700I	GAANNNNTTC	1 cut(s)	467
AspLEI	GCGC	3 cut(s)	140, 325, 398
AsuHPI	GGTGA	3 cut(s)	155, 809, 841
AsuII	TTCGAA	1 cut(s)	617
BalI	TGGCCA	1 cut(s)	497
BbsI	GAAGAC	1 cut(s)	966
BbvI	GCAGC	4 cut(s)	386, 399, 902, 905
BccI	CCATC	5 cut(s)	404, 617, 803, 947, 989
BceAI	ACGGC	2 cut(s)	94, 119
BciT130I	CCWGG	2 cut(s)	47, 601
BcoDI	GTCTC	1 cut(s)	521
BfaI	CTAG	1 cut(s)	723
BfmI	CTRYAG	3 cut(s)	90, 450, 919
BfoI	RGCGCY	2 cut(s)	141, 399
BisI	GCNGC	4 cut(s)	375, 388, 916, 919
BlpI	GCTNAGC	1 cut(s)	564
BlsI	GCNGC	4 cut(s)	376, 389, 917, 920
Bme1390I	CCNGG	2 cut(s)	47, 601
BmiI	GGNNCC	1 cut(s)	415
BmrFI	CCNGG	2 cut(s)	47, 601
BmsI	GCATC	4 cut(s)	233, 386, 430, 985
BpiI	GAAGAC	1 cut(s)	966
BplI	GAGNNNNNCTC	2 cut(s)	102, 134
Bpu10I	CCTNAGC	1 cut(s)	293
Bpu1102I	GCTNAGC	1 cut(s)	564
Bpu14I	TTCGAA	1 cut(s)	617
BsaHI	GRCGYC	2 cut(s)	198, 358
Bsc4I	CCNNNNNNNGG	2 cut(s)	794, 825
Bse118I	RCCGGY	1 cut(s)	200
Bse1I	ACTGG	3 cut(s)	362, 744, 844
Bse3DI	GCAATG	2 cut(s)	669, 830
BseBI	CCWGG	2 cut(s)	47, 601
BseGI	GGATG	1 cut(s)	628
BseLI	CCNNNNNNNGG	2 cut(s)	794, 825
BseMI	GCAATG	2 cut(s)	669, 830
BseMII	CTCAG	1 cut(s)	555
BseNI	ACTGG	3 cut(s)	362, 744, 844
BseXI	GCAGC	4 cut(s)	386, 399, 902, 905
BseYI	CCCAGC	1 cut(s)	893
BsgI	GTGCAG	1 cut(s)	697
Bsh1236I	CGCG	1 cut(s)	325
BshFI	GGCC	3 cut(s)	236, 257, 497
BsiSI	CCGG	1 cut(s)	201
BslI	CCNNNNNNNGG	2 cut(s)	794, 825
BsmAI	GTCTC	1 cut(s)	521
BsmBI	CGTCTC	1 cut(s)	521
BsnI	GGCC	3 cut(s)	236, 257, 497
Bsp119I	TTCGAA	1 cut(s)	617
Bsp143I	GATC	2 cut(s)	511, 516
Bsp1720I	GCTNAGC	1 cut(s)	564
BspACI	CCGC	3 cut(s)	81, 222, 642
BspANI	GGCC	3 cut(s)	236, 257, 497
BspCNI	CTCAG	1 cut(s)	556
BspFNI	CGCG	1 cut(s)	325
BspLI	GGNNCC	1 cut(s)	415
BspMAI	CTGCAG	1 cut(s)	923
BspT104I	TTCGAA	1 cut(s)	617
BsrDI	GCAATG	2 cut(s)	669, 830
BsrFI	RCCGGY	1 cut(s)	200
BsrI	ACTGG	3 cut(s)	362, 744, 844
BssAI	RCCGGY	1 cut(s)	200
BssMI	GATC	2 cut(s)	511, 516
BssNI	GRCGYC	2 cut(s)	198, 358
Bst2UI	CCWGG	2 cut(s)	47, 601
Bst4CI	ACNGT	2 cut(s)	451, 794
Bst6I	CTCTTC	1 cut(s)	849
BstACI	GRCGYC	2 cut(s)	198, 358
BstBI	TTCGAA	1 cut(s)	617
BstDEI	CTNAG	3 cut(s)	270, 293, 564
BstF5I	GGATG	1 cut(s)	628
BstFNI	CGCG	1 cut(s)	325
BstH2I	RGCGCY	2 cut(s)	141, 399
BstHHI	GCGC	3 cut(s)	140, 325, 398
BstKTI	GATC	2 cut(s)	514, 519
BstMAI	GTCTC	1 cut(s)	521
BstMBI	GATC	2 cut(s)	511, 516
BstMWI	GCNNNNNNNGC	7 cut(s)	103, 144, 320, 393, 404, 671, 869
BstNI	CCWGG	2 cut(s)	47, 601
BstSCI	CCNGG	2 cut(s)	45, 599
BstSFI	CTRYAG	3 cut(s)	90, 450, 919
BstUI	CGCG	1 cut(s)	325
BstV1I	GCAGC	4 cut(s)	386, 399, 902, 905
BstV2I	GAAGAC	1 cut(s)	966
BsuRI	GGCC	3 cut(s)	236, 257, 497
BtsCI	GGATG	1 cut(s)	628
BtsIMutI	CAGTG	1 cut(s)	799
CaiI	CAGNNNCTG	1 cut(s)	493
CfoI	GCGC	3 cut(s)	140, 325, 398
Cfr10I	RCCGGY	1 cut(s)	200
CseI	GACGC	1 cut(s)	206
Csp6I	GTAC	2 cut(s)	179, 485
CviAII	CATG	2 cut(s)	107, 681
CviQI	GTAC	2 cut(s)	179, 485
DdeI	CTNAG	3 cut(s)	270, 293, 564
DpnI	GATC	2 cut(s)	513, 518
DpnII	GATC	2 cut(s)	511, 516
EaeI	YGGCCR	1 cut(s)	495
Eam1104I	CTCTTC	1 cut(s)	849
EarI	CTCTTC	1 cut(s)	849
EcoRII	CCWGG	2 cut(s)	45, 599
Esp3I	CGTCTC	1 cut(s)	521
FaeI	CATG	2 cut(s)	110, 684
FatI	CATG	2 cut(s)	106, 680
FauI	CCCGC	1 cut(s)	635
FauNDI	CATATG	1 cut(s)	559
Fnu4HI	GCNGC	4 cut(s)	375, 388, 916, 919
FokI	GGATG	1 cut(s)	635
Fsp4HI	GCNGC	4 cut(s)	375, 388, 916, 919
FspBI	CTAG	1 cut(s)	723
GlaI	GCGC	3 cut(s)	139, 324, 397
GluI	GCNGC	4 cut(s)	375, 388, 916, 919
GsaI	CCCAGC	1 cut(s)	897
HaeII	RGCGCY	2 cut(s)	141, 399
HaeIII	GGCC	3 cut(s)	236, 257, 497
HapII	CCGG	1 cut(s)	201
HgaI	GACGC	1 cut(s)	206
HhaI	GCGC	3 cut(s)	140, 325, 398
Hin1I	GRCGYC	2 cut(s)	198, 358
Hin1II	CATG	2 cut(s)	110, 684
Hin6I	GCGC	3 cut(s)	138, 323, 396
HinP1I	GCGC	3 cut(s)	138, 323, 396
HinfI	GANTC	6 cut(s)	490, 532, 627, 647, 677, 705
HpaII	CCGG	1 cut(s)	201
HphI	GGTGA	3 cut(s)	155, 809, 841
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188I	TCNGA	6 cut(s)	40, 418, 516, 756, 816, 944
Hpy188III	TCNNGA	2 cut(s)	354, 572
Hpy8I	GTNNAC	1 cut(s)	181
Hpy99I	CGWCG	2 cut(s)	28, 31
HpyAV	CCTTC	5 cut(s)	168, 457, 575, 613, 619
HpyCH4III	ACNGT	2 cut(s)	451, 794
HpyCH4IV	ACGT	3 cut(s)	23, 358, 690
HpyCH4V	TGCA	8 cut(s)	206, 314, 374, 674, 684, 714, 863, 921
HpyF10VI	GCNNNNNNNGC	7 cut(s)	103, 144, 320, 393, 404, 671, 869
HpyF3I	CTNAG	3 cut(s)	270, 293, 564
HpySE526I	ACGT	3 cut(s)	23, 358, 690
Hsp92I	GRCGYC	2 cut(s)	198, 358
Hsp92II	CATG	2 cut(s)	110, 684
HspAI	GCGC	3 cut(s)	138, 323, 396
Kzo9I	GATC	2 cut(s)	511, 516
LmnI	GCTCC	2 cut(s)	110, 135
Lsp1109I	GCAGC	4 cut(s)	386, 399, 902, 905
LweI	GCATC	4 cut(s)	233, 386, 430, 985
MaeI	CTAG	1 cut(s)	723
MaeII	ACGT	3 cut(s)	23, 358, 690
MaeIII	GTNAC	1 cut(s)	760
MalI	GATC	2 cut(s)	513, 518
MboI	GATC	2 cut(s)	511, 516
MboII	GAAGA	5 cut(s)	287, 590, 866, 966, 969
MfeI	CAATTG	1 cut(s)	315
MlsI	TGGCCA	1 cut(s)	497
MluCI	AATT	5 cut(s)	309, 315, 330, 499, 591
MluNI	TGGCCA	1 cut(s)	497
MmeI	TCCRAC	2 cut(s)	682, 990
Mox20I	TGGCCA	1 cut(s)	497
MroXI	GAANNNNTTC	1 cut(s)	467
MscI	TGGCCA	1 cut(s)	497
MseI	TTAA	1 cut(s)	987
Msp20I	TGGCCA	1 cut(s)	497
MspA1I	CMGCKG	1 cut(s)	642
MspI	CCGG	1 cut(s)	201
MspR9I	CCNGG	2 cut(s)	47, 601
MunI	CAATTG	1 cut(s)	315
MvaI	CCWGG	2 cut(s)	47, 601
MvnI	CGCG	1 cut(s)	325
MwoI	GCNNNNNNNGC	7 cut(s)	103, 144, 320, 393, 404, 671, 869
NdeI	CATATG	1 cut(s)	559
NdeII	GATC	2 cut(s)	511, 516
NlaIII	CATG	2 cut(s)	110, 684
NlaIV	GGNNCC	1 cut(s)	415
NspV	TTCGAA	1 cut(s)	617
PdmI	GAANNNNTTC	1 cut(s)	467
PfeI	GAWTC	6 cut(s)	490, 532, 627, 647, 677, 705
PflMI	CCANNNNNTGG	1 cut(s)	825
PfoI	TCCNGGA	1 cut(s)	45
PkrI	GCNGC	4 cut(s)	376, 389, 917, 920
Psp1406I	AACGTT	1 cut(s)	690
Psp6I	CCWGG	2 cut(s)	45, 599
PspFI	CCCAGC	1 cut(s)	893
PspGI	CCWGG	2 cut(s)	45, 599
PspN4I	GGNNCC	1 cut(s)	415
PstI	CTGCAG	1 cut(s)	923
PstNI	CAGNNNCTG	1 cut(s)	493
RsaI	GTAC	2 cut(s)	180, 486
RsaNI	GTAC	2 cut(s)	179, 485
SaqAI	TTAA	1 cut(s)	987
SatI	GCNGC	4 cut(s)	375, 388, 916, 919
Sau3AI	GATC	2 cut(s)	511, 516
ScrFI	CCNGG	2 cut(s)	47, 601
SfaNI	GCATC	4 cut(s)	233, 386, 430, 985
SfcI	CTRYAG	3 cut(s)	90, 450, 919
SfuI	TTCGAA	1 cut(s)	617
SgrAI	CRCCGGYG	1 cut(s)	200
Sse9I	AATT	5 cut(s)	309, 315, 330, 499, 591
SsiI	CCGC	3 cut(s)	81, 222, 642
SspMI	CTAG	1 cut(s)	723
StyD4I	CCNGG	2 cut(s)	45, 599
TaaI	ACNGT	2 cut(s)	451, 794
TaiI	ACGT	3 cut(s)	26, 361, 693
TaqI	TCGA	2 cut(s)	617, 836
TasI	AATT	5 cut(s)	309, 315, 330, 499, 591
TfiI	GAWTC	6 cut(s)	490, 532, 627, 647, 677, 705
Tru1I	TTAA	1 cut(s)	987
Tru9I	TTAA	1 cut(s)	987
TscAI	CASTG	1 cut(s)	799
TseI	GCWGC	4 cut(s)	374, 387, 915, 918
TspDTI	ATGAA	4 cut(s)	591, 669, 735, 867
TspGWI	ACGGA	1 cut(s)	750
TspRI	CASTG	1 cut(s)	799
Van91I	CCANNNNNTGG	1 cut(s)	825
XapI	RAATTY	2 cut(s)	330, 591
XmnI	GAANNNNTTC	1 cut(s)	467
XspI	CTAG	1 cut(s)	723
ZraI	GACGTC	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.