Rh4DG011100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0002729
Physical Location & Seq
Reverse (-)
1720377 .. 1732652
12276 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG011100.1

Sequence Viewer

Length: 354 bp
ATGGCGACTGTGACCTCTAAGGACTACTTCTCAGCTTATCGCGACTACTGTGATTCTCCAGACTTTTTTGATCAGTTTTTCTCCTTCTCCCCCCAAACAGAGAGTGGGAACTATAAACTCTCCACTTGGAATGGTTGCCGATTCAGGCAAAGTCGGGTAGAAGTTGATCTGATTGAATTTGAGACGACTGAAAATAAGCTAGAAGTAAAGAGCTTCGACTTGGACTCGCCGAAATCTGACGTGAGATCAACCACTGGCACCGGAGCTGTGGCAGTGTCCGGAGTTGGACGAGGTGACGTTGAACAGATCTCCGATCTCTTCCTCGAAGCCTTTCTGATGAGAGATGAGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

13.32

Weight (kDa)

4.45

Isoelectric Point (pI)

39.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 257
AccII CGCG 1 cut(s) 42
AccIII TCCGGA 1 cut(s) 278
AcsI RAATTY 1 cut(s) 176
AgsI TTSAA 2 cut(s) 176, 302
AjiI CACGTC 1 cut(s) 241
AluBI AGCT 4 cut(s) 35, 199, 213, 266
AluI AGCT 4 cut(s) 35, 199, 213, 266
Alw26I GTCTC 1 cut(s) 176
Aor13HI TCCGGA 1 cut(s) 278
ApoI RAATTY 1 cut(s) 176
Asp700I GAANNNNTTC 1 cut(s) 330
AsuHPI GGTGA 1 cut(s) 305
BanI GGYRCC 1 cut(s) 257
BclI TGATCA 1 cut(s) 70
BcoDI GTCTC 1 cut(s) 176
BfaI CTAG 1 cut(s) 200
BglII AGATCT 1 cut(s) 306
BmgBI CACGTC 1 cut(s) 241
BmiI GGNNCC 1 cut(s) 259
BpmI CTGGAG 1 cut(s) 42
BsaWI WCCGGW 2 cut(s) 260, 278
Bse1I ACTGG 1 cut(s) 259
BseAI TCCGGA 1 cut(s) 278
BseMII CTCAG 1 cut(s) 45
BseNI ACTGG 1 cut(s) 259
Bsh1236I CGCG 1 cut(s) 42
BshNI GGYRCC 1 cut(s) 257
BsiSI CCGG 2 cut(s) 261, 279
BsmAI GTCTC 1 cut(s) 176
BsmBI CGTCTC 1 cut(s) 176
Bsp13I TCCGGA 1 cut(s) 278
Bsp143I GATC 5 cut(s) 70, 166, 245, 306, 313
Bsp68I TCGCGA 1 cut(s) 42
BspCNI CTCAG 1 cut(s) 44
BspEI TCCGGA 1 cut(s) 278
BspFNI CGCG 1 cut(s) 42
BspLI GGNNCC 1 cut(s) 259
BspT107I GGYRCC 1 cut(s) 257
BsrI ACTGG 1 cut(s) 259
BssMI GATC 5 cut(s) 70, 166, 245, 306, 313
Bst4CI ACNGT 2 cut(s) 10, 50
Bst6I CTCTTC 1 cut(s) 323
BstDEI CTNAG 2 cut(s) 18, 31
BstFNI CGCG 1 cut(s) 42
BstKTI GATC 5 cut(s) 73, 169, 248, 309, 316
BstMAI GTCTC 1 cut(s) 176
BstMBI GATC 5 cut(s) 70, 166, 245, 306, 313
BstUI CGCG 1 cut(s) 42
BstX2I RGATCY 1 cut(s) 306
BstYI RGATCY 1 cut(s) 306
BtrI CACGTC 1 cut(s) 241
BtsI GCAGTG 1 cut(s) 279
BtsIMutI CAGTG 2 cut(s) 252, 279
BtuMI TCGCGA 1 cut(s) 42
CviJI RGCY 5 cut(s) 35, 199, 213, 266, 329
CviKI_1 RGCY 5 cut(s) 35, 199, 213, 266, 329
DdeI CTNAG 2 cut(s) 18, 31
DpnI GATC 5 cut(s) 72, 168, 247, 308, 315
DpnII GATC 5 cut(s) 70, 166, 245, 306, 313
Eam1104I CTCTTC 1 cut(s) 323
EarI CTCTTC 1 cut(s) 323
Esp3I CGTCTC 1 cut(s) 176
FaiI YATR 1 cut(s) 114
FalI AAGNNNNNCTT 2 cut(s) 11, 43
FbaI TGATCA 1 cut(s) 70
FspBI CTAG 1 cut(s) 200
GsuI CTGGAG 1 cut(s) 42
HapII CCGG 2 cut(s) 261, 279
HinfI GANTC 3 cut(s) 53, 141, 224
HpaII CCGG 2 cut(s) 261, 279
HphI GGTGA 1 cut(s) 305
Hpy188I TCNGA 4 cut(s) 171, 238, 313, 336
Hpy188III TCNNGA 3 cut(s) 41, 59, 279
HpyAV CCTTC 1 cut(s) 94
HpyCH4III ACNGT 2 cut(s) 10, 50
HpyCH4IV ACGT 2 cut(s) 240, 297
HpyF3I CTNAG 2 cut(s) 18, 31
HpySE526I ACGT 2 cut(s) 240, 297
Kpn2I TCCGGA 1 cut(s) 278
Ksp22I TGATCA 1 cut(s) 70
Kzo9I GATC 5 cut(s) 70, 166, 245, 306, 313
LmnI GCTCC 1 cut(s) 263
LpnPI CCDG 5 cut(s) 72, 130, 240, 274, 292
MaeI CTAG 1 cut(s) 200
MaeII ACGT 2 cut(s) 240, 297
MaeIII GTNAC 2 cut(s) 10, 293
MalI GATC 5 cut(s) 72, 168, 247, 308, 315
MboI GATC 5 cut(s) 70, 166, 245, 306, 313
MboII GAAGA 1 cut(s) 310
MflI RGATCY 1 cut(s) 306
MluCI AATT 1 cut(s) 176
MlyI GAGTC 1 cut(s) 218
MmeI TCCRAC 1 cut(s) 265
MnlI CCTC 3 cut(s) 25, 284, 332
MroI TCCGGA 1 cut(s) 278
MroXI GAANNNNTTC 1 cut(s) 330
MspI CCGG 2 cut(s) 261, 279
MvnI CGCG 1 cut(s) 42
NdeII GATC 5 cut(s) 70, 166, 245, 306, 313
NlaIV GGNNCC 1 cut(s) 259
NmuCI GTSAC 2 cut(s) 10, 293
NruI TCGCGA 1 cut(s) 42
PdmI GAANNNNTTC 1 cut(s) 330
PfeI GAWTC 2 cut(s) 53, 141
PleI GAGTC 1 cut(s) 218
PpsI GAGTC 1 cut(s) 218
PspN4I GGNNCC 1 cut(s) 259
PsuI RGATCY 1 cut(s) 306
RruI TCGCGA 1 cut(s) 42
Sau3AI GATC 5 cut(s) 70, 166, 245, 306, 313
SchI GAGTC 1 cut(s) 218
SetI ASST 8 cut(s) 17, 37, 201, 215, 243, 268, 295, 300
Sse9I AATT 1 cut(s) 176
SspMI CTAG 1 cut(s) 200
TaaI ACNGT 2 cut(s) 10, 50
TaiI ACGT 2 cut(s) 243, 300
TaqI TCGA 2 cut(s) 216, 324
TasI AATT 1 cut(s) 176
TfiI GAWTC 2 cut(s) 53, 141
TscAI CASTG 2 cut(s) 259, 279
TseFI GTSAC 2 cut(s) 10, 293
Tsp45I GTSAC 2 cut(s) 10, 293
TspRI CASTG 2 cut(s) 259, 279
XapI RAATTY 1 cut(s) 176
XcmI CCANNNNNNNNNTGG 1 cut(s) 101
XmnI GAANNNNTTC 1 cut(s) 330
XspI CTAG 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.