Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0016411

Physical Location & Seq

Genomic Coordinates Reverse (-)

42593008 .. 42596053

Gene Structure 3046 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034428

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGCGACAAGGCCTCAACTTGATTATAAAGAAGGTCGGAAAATCATTGAGCGATTCACCCCCGATCAGCGTTGAAACTGCGTCGTCATCATCAATGAGGGAGTTTCTCCGGCAGGCCAGCGACTTGGCAATCATCAATGGTGGTCTGGCGACCGAGATCAAACGGCATGGCGTTCATCTTGGTTATCTTGAAGCTGGTGCAGATATTATAATCACAGCTTCGTATCAGGTAACTATTCAAGGTTTTAAGGCCAAAGGGTTTTCGACTGAAGAGAGTGAATCATTGCTTAGGAAGAGTATGGAGACTGCGCGTGCAGCAGTGGTAGGGACAGCACGAGCCAGTGGTGGCTCGTCTCCTAAAGATCAAGGTTCCTTTTCTGCGAGAGGCGTACATGTTGCAGCGCAGTTGAGAACGAATTTGCGGGCTTGTATTGCGGCTTGCGCTGACTATGTTTGTAGAAGAGAGGCAGCAGAACTACATATTTTCAGCCTTGATGCGGTGCTGGAAAGGTCTACTACCAGCGACGACGATGATGGATCGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0006082 GO:0006520 GO:0006555 GO:0006575 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008172 GO:0008652 GO:0008757 GO:0008898 GO:0009058 GO:0009066 GO:0009067 GO:0009086 GO:0009987 GO:0016053 GO:0016740 GO:0016741 GO:0019752 GO:0032259 GO:0033477 GO:0033528 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko01110 map00270 map01100 map01110

Pfam Domains

Protein Families

S-methyl_trans

Protein Analysis

182

Amino Acids

19.17

Weight (kDa)

6.9

Isoelectric Point (pI)

41.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S-methyl_trans	PF02574	57 - 109	4.5e-10	Homocysteine S-methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0016411)

Species	Orthologous Gene IDs
malus_domestica	MD12G1084900.v1.1
prunus_persica	Prupe.1G018900_v2.0.a1 Prupe.1G018900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0350231
rosa_laevigata	RLG00000010133 RLG00000034428
rosa_multiflora	Rmu_sc0000013.1_g000008 Rmu_sc0015829.1_g000001
rosa_samantha	Rh4AG011900 Rh4AG015300 Rh4BG010300 Rh4CG014800 Rh4CG016400 Rh4CG016500 Rh6AG322400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	26, 209
AccI	GTMKAC	1 cut(s)	512
AccII	CGCG	1 cut(s)	310
AciI	CCGC	3 cut(s)	421, 434, 497
AclWI	GGATC	1 cut(s)	544
AcsI	RAATTY	1 cut(s)	415
AcuI	CTGAAG	1 cut(s)	288
AfaI	GTAC	1 cut(s)	390
AfiI	CCNNNNNNNGG	1 cut(s)	496
AflIII	ACRYGT	1 cut(s)	391
AgsI	TTSAA	3 cut(s)	74, 191, 239
AluBI	AGCT	2 cut(s)	194, 218
AluI	AGCT	2 cut(s)	194, 218
Alw26I	GTCTC	2 cut(s)	296, 357
AlwI	GGATC	1 cut(s)	544
AoxI	GGCC	3 cut(s)	10, 114, 249
ApeKI	GCWGC	3 cut(s)	314, 398, 467
ApoI	RAATTY	1 cut(s)	415
AspLEI	GCGC	3 cut(s)	310, 403, 443
AsuHPI	GGTGA	1 cut(s)	48
BauI	CACGAG	1 cut(s)	333
BbvI	GCAGC	3 cut(s)	326, 410, 479
BccI	CCATC	1 cut(s)	527
BceAI	ACGGC	1 cut(s)	179
BcoDI	GTCTC	2 cut(s)	296, 357
BisI	GCNGC	4 cut(s)	315, 399, 435, 468
BlsI	GCNGC	4 cut(s)	316, 400, 436, 469
BmiI	GGNNCC	1 cut(s)	370
BmsI	GCATC	1 cut(s)	484
Bpu10I	CCTNAGC	1 cut(s)	287
Bsc4I	CCNNNNNNNGG	1 cut(s)	496
Bse1I	ACTGG	1 cut(s)	339
Bse3DI	GCAATG	1 cut(s)	281
BseLI	CCNNNNNNNGG	1 cut(s)	496
BseMI	GCAATG	1 cut(s)	281
BseNI	ACTGG	1 cut(s)	339
BseXI	GCAGC	3 cut(s)	326, 410, 479
BsgI	GTGCAG	2 cut(s)	219, 333
Bsh1236I	CGCG	1 cut(s)	310
Bsh1285I	CGRYCG	1 cut(s)	153
BshFI	GGCC	3 cut(s)	12, 116, 251
BsiEI	CGRYCG	1 cut(s)	153
BsiSI	CCGG	1 cut(s)	109
BslFI	GGGAC	1 cut(s)	340
BslI	CCNNNNNNNGG	1 cut(s)	496
BsmAI	GTCTC	2 cut(s)	296, 357
BsmBI	CGTCTC	1 cut(s)	357
BsmFI	GGGAC	1 cut(s)	340
BsnI	GGCC	3 cut(s)	12, 116, 251
Bsp143I	GATC	4 cut(s)	63, 156, 361, 536
BspACI	CCGC	3 cut(s)	421, 434, 497
BspANI	GGCC	3 cut(s)	12, 116, 251
BspFNI	CGCG	1 cut(s)	310
BspLI	GGNNCC	1 cut(s)	370
BspPI	GGATC	1 cut(s)	544
BsrDI	GCAATG	1 cut(s)	281
BsrI	ACTGG	1 cut(s)	339
BssMI	GATC	4 cut(s)	63, 156, 361, 536
BssSI	CACGAG	1 cut(s)	333
Bst2BI	CACGAG	1 cut(s)	333
Bst6I	CTCTTC	3 cut(s)	264, 287, 454
BstC8I	GCNNGC	5 cut(s)	114, 118, 312, 423, 439
BstDEI	CTNAG	1 cut(s)	287
BstFNI	CGCG	1 cut(s)	310
BstHHI	GCGC	3 cut(s)	310, 403, 443
BstKTI	GATC	4 cut(s)	66, 159, 364, 539
BstMAI	GTCTC	2 cut(s)	296, 357
BstMBI	GATC	4 cut(s)	63, 156, 361, 536
BstMCI	CGRYCG	1 cut(s)	153
BstMWI	GCNNNNNNNGC	3 cut(s)	314, 431, 440
BstNSI	RCATGY	1 cut(s)	395
BstUI	CGCG	1 cut(s)	310
BstV1I	GCAGC	3 cut(s)	326, 410, 479
BstXI	CCANNNNNNTGG	1 cut(s)	124
BsuRI	GGCC	3 cut(s)	12, 116, 251
BtsI	GCAGTG	1 cut(s)	324
BtsIMutI	CAGTG	2 cut(s)	324, 346
Cac8I	GCNNGC	5 cut(s)	114, 118, 312, 423, 439
CfoI	GCGC	3 cut(s)	310, 403, 443
CseI	GACGC	1 cut(s)	69
Csp6I	GTAC	1 cut(s)	389
CviAII	CATG	2 cut(s)	167, 392
CviQI	GTAC	1 cut(s)	389
DdeI	CTNAG	1 cut(s)	287
DpnI	GATC	4 cut(s)	65, 158, 363, 538
DpnII	GATC	4 cut(s)	63, 156, 361, 536
Eam1104I	CTCTTC	3 cut(s)	264, 287, 454
EarI	CTCTTC	3 cut(s)	264, 287, 454
Eco147I	AGGCCT	1 cut(s)	12
Eco57I	CTGAAG	1 cut(s)	288
Esp3I	CGTCTC	1 cut(s)	357
FaeI	CATG	2 cut(s)	170, 395
FaiI	YATR	8 cut(s)	26, 168, 209, 299, 393, 450, 480, 544
FaqI	GGGAC	1 cut(s)	340
FatI	CATG	2 cut(s)	166, 391
FauI	CCCGC	1 cut(s)	414
FblI	GTMKAC	1 cut(s)	512
Fnu4HI	GCNGC	4 cut(s)	315, 399, 435, 468
Fsp4HI	GCNGC	4 cut(s)	315, 399, 435, 468
GlaI	GCGC	3 cut(s)	309, 402, 442
GluI	GCNGC	4 cut(s)	315, 399, 435, 468
HaeIII	GGCC	3 cut(s)	12, 116, 251
HapII	CCGG	1 cut(s)	109
HgaI	GACGC	1 cut(s)	69
HhaI	GCGC	3 cut(s)	310, 403, 443
Hin1II	CATG	2 cut(s)	170, 395
Hin6I	GCGC	3 cut(s)	308, 401, 441
HinP1I	GCGC	3 cut(s)	308, 401, 441
HinfI	GANTC	2 cut(s)	53, 278
HpaII	CCGG	1 cut(s)	109
HphI	GGTGA	1 cut(s)	48
Hpy166II	GTNNAC	1 cut(s)	513
Hpy188I	TCNGA	1 cut(s)	38
Hpy188III	TCNNGA	1 cut(s)	188
Hpy8I	GTNNAC	1 cut(s)	513
Hpy99I	CGWCG	3 cut(s)	85, 527, 530
HpyAV	CCTTC	1 cut(s)	25
HpyCH4V	TGCA	3 cut(s)	200, 314, 398
HpyF10VI	GCNNNNNNNGC	3 cut(s)	314, 431, 440
HpyF3I	CTNAG	1 cut(s)	287
Hsp92II	CATG	2 cut(s)	170, 395
HspAI	GCGC	3 cut(s)	308, 401, 441
Kzo9I	GATC	4 cut(s)	63, 156, 361, 536
LpnPI	CCDG	9 cut(s)	98, 122, 130, 131, 180, 212, 352, 488, 532
Lsp1109I	GCAGC	3 cut(s)	326, 410, 479
LweI	GCATC	1 cut(s)	484
MaeIII	GTNAC	1 cut(s)	229
MalI	GATC	4 cut(s)	65, 158, 363, 538
MboI	GATC	4 cut(s)	63, 156, 361, 536
MboII	GAAGA	3 cut(s)	281, 304, 471
MluCI	AATT	1 cut(s)	415
MmeI	TCCRAC	1 cut(s)	16
MnlI	CCTC	4 cut(s)	23, 90, 377, 457
MseI	TTAA	1 cut(s)	246
MspI	CCGG	1 cut(s)	109
MvnI	CGCG	1 cut(s)	310
MwoI	GCNNNNNNNGC	3 cut(s)	314, 431, 440
NdeII	GATC	4 cut(s)	63, 156, 361, 536
NlaIII	CATG	2 cut(s)	170, 395
NlaIV	GGNNCC	1 cut(s)	370
NspI	RCATGY	1 cut(s)	395
PceI	AGGCCT	1 cut(s)	12
PciI	ACATGT	1 cut(s)	391
PfeI	GAWTC	2 cut(s)	53, 278
PkrI	GCNGC	4 cut(s)	316, 400, 436, 469
PscI	ACATGT	1 cut(s)	391
PsiI	TTATAA	2 cut(s)	26, 209
PspN4I	GGNNCC	1 cut(s)	370
RsaI	GTAC	1 cut(s)	390
RsaNI	GTAC	1 cut(s)	389
SaqAI	TTAA	1 cut(s)	246
SatI	GCNGC	4 cut(s)	315, 399, 435, 468
Sau3AI	GATC	4 cut(s)	63, 156, 361, 536
SetI	ASST	7 cut(s)	36, 196, 220, 231, 244, 370, 512
SfaNI	GCATC	1 cut(s)	484
Sse9I	AATT	1 cut(s)	415
SseBI	AGGCCT	1 cut(s)	12
SsiI	CCGC	3 cut(s)	421, 434, 497
StuI	AGGCCT	1 cut(s)	12
TaqI	TCGA	1 cut(s)	263
TaqII	GACCGA	1 cut(s)	167
TasI	AATT	1 cut(s)	415
TauI	GCSGC	1 cut(s)	437
TfiI	GAWTC	2 cut(s)	53, 278
Tru1I	TTAA	1 cut(s)	246
Tru9I	TTAA	1 cut(s)	246
TscAI	CASTG	2 cut(s)	324, 346
TseI	GCWGC	3 cut(s)	314, 398, 467
TspDTI	ATGAA	1 cut(s)	164
TspRI	CASTG	2 cut(s)	324, 346
XapI	RAATTY	1 cut(s)	415
XceI	RCATGY	1 cut(s)	395
XmiI	GTMKAC	1 cut(s)	512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.