Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0016411

Physical Location & Seq

Genomic Coordinates Forward (+)

52249554 .. 52250545

Gene Structure 992 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG322400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGGCAGCCGCAGCAGCAGCAGCAGCAGCGTCAAAATGGCGTCGTCGTCAATGAGGGAGTTTCTCCGGCAGGCAGGCGGCGTCGCCGTCGTCGACGGTGGTCTGGCGACCGAGCTCGAGCGGCACGGCGCTGACCTCAACGATCCTCTCTGGAGCGCCAAGTGCCTCCTCACTTCCTCTCACCTCATTCGCGCCGTTCATCTTGATTATCTTGAAGCTGGTGCTGATATCATAATCACAGCTTCTTATCAGGCAACTATTCAAGGTTTTGAGGCCAAGGGGTTTTCGACTGAGGAGAGTGAATCATTGCTTAGGAAGAGTGTGGAGATTGCGCGTGAGGCGCGAGATATTTATTACGAAAGGTGTAGTGAGGGGTCGTGTAATGATAGTGATGGTAGAGTTCTCAAACGTCGGCCCATCATAGTTGCAGCATCTGTGGGCAGCTATGGGGCTTATTTGGCTGATGGGTCTGAGTACAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0006082 GO:0006520 GO:0006555 GO:0006575 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008172 GO:0008652 GO:0008757 GO:0008898 GO:0009058 GO:0009066 GO:0009067 GO:0009086 GO:0009987 GO:0016053 GO:0016740 GO:0016741 GO:0019752 GO:0032259 GO:0033477 GO:0033528 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko01110 map00270 map01100 map01110

Pfam Domains

Protein Families

S-methyl_trans

Protein Analysis

160

Amino Acids

17.26

Weight (kDa)

5.41

Isoelectric Point (pI)

48.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S-methyl_trans	PF02574	30 - 156	5.3e-32	Homocysteine S-methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016411)

Species	Orthologous Gene IDs
malus_domestica	MD12G1084900.v1.1
prunus_persica	Prupe.1G018900_v2.0.a1 Prupe.1G018900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0350231
rosa_laevigata	RLG00000010133 RLG00000034428
rosa_multiflora	Rmu_sc0000013.1_g000008 Rmu_sc0015829.1_g000001
rosa_samantha	Rh4AG011900 Rh4AG015300 Rh4BG010300 Rh4CG014800 Rh4CG016400 Rh4CG016500 Rh6AG322400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	121
AccI	GTMKAC	1 cut(s)	93
AccII	CGCG	3 cut(s)	192, 334, 343
AciI	CCGC	3 cut(s)	10, 78, 121
AclWI	GGATC	1 cut(s)	137
AcyI	GRCGYC	2 cut(s)	41, 81
AfaI	GTAC	1 cut(s)	476
AgsI	TTSAA	2 cut(s)	215, 263
AluBI	AGCT	4 cut(s)	115, 218, 242, 444
AluI	AGCT	4 cut(s)	115, 218, 242, 444
Alw21I	GWGCWC	1 cut(s)	117
AlwI	GGATC	1 cut(s)	137
AlwNI	CAGNNNCTG	1 cut(s)	434
Ama87I	CYCGRG	1 cut(s)	116
AoxI	GGCC	2 cut(s)	273, 413
ApeKI	GCWGC	9 cut(s)	6, 12, 15, 18, 21, 24, 27, 428, 441
AspLEI	GCGC	5 cut(s)	131, 158, 194, 334, 343
AspS9I	GGNCC	1 cut(s)	414
AsuHPI	GGTGA	1 cut(s)	173
AvaI	CYCGRG	1 cut(s)	116
BanII	GRGCYC	1 cut(s)	117
Bbv12I	GWGCWC	1 cut(s)	117
BbvI	GCAGC	9 cut(s)	18, 24, 27, 30, 33, 36, 39, 440, 453
BccI	CCATC	3 cut(s)	386, 425, 458
BceAI	ACGGC	3 cut(s)	71, 142, 179
BfoI	RGCGCY	2 cut(s)	132, 159
BmeT110I	CYCGRG	1 cut(s)	116
BmgT120I	GGNCC	1 cut(s)	414
BmsI	GCATC	1 cut(s)	440
BoxI	GACNNNNGTC	1 cut(s)	99
BpmI	CTGGAG	1 cut(s)	172
Bpu10I	CCTNAGC	1 cut(s)	311
BsaHI	GRCGYC	2 cut(s)	41, 81
BsaJI	CCNNGG	1 cut(s)	276
Bse3DI	GCAATG	1 cut(s)	305
BseDI	CCNNGG	1 cut(s)	276
BseMI	GCAATG	1 cut(s)	305
BseMII	CTCAG	2 cut(s)	282, 462
BseRI	GAGGAG	2 cut(s)	158, 308
BseXI	GCAGC	9 cut(s)	18, 24, 27, 30, 33, 36, 39, 440, 453
Bsh1236I	CGCG	3 cut(s)	192, 334, 343
Bsh1285I	CGRYCG	1 cut(s)	111
BshFI	GGCC	2 cut(s)	275, 415
BsiEI	CGRYCG	1 cut(s)	111
BsiHKAI	GWGCWC	1 cut(s)	117
BsiHKCI	CYCGRG	1 cut(s)	116
BsiSI	CCGG	1 cut(s)	67
BsnI	GGCC	2 cut(s)	275, 415
BsoBI	CYCGRG	1 cut(s)	116
Bsp1286I	GDGCHC	1 cut(s)	117
Bsp143I	GATC	1 cut(s)	142
BspACI	CCGC	3 cut(s)	10, 78, 121
BspANI	GGCC	2 cut(s)	275, 415
BspCNI	CTCAG	2 cut(s)	283, 463
BspFNI	CGCG	3 cut(s)	192, 334, 343
BspPI	GGATC	1 cut(s)	137
BsrBI	CCGCTC	1 cut(s)	121
BsrDI	GCAATG	1 cut(s)	305
BssECI	CCNNGG	1 cut(s)	276
BssMI	GATC	1 cut(s)	142
BssNI	GRCGYC	2 cut(s)	41, 81
BssT1I	CCWWGG	1 cut(s)	276
Bst4CI	ACNGT	1 cut(s)	98
Bst6I	CTCTTC	1 cut(s)	311
BstACI	GRCGYC	2 cut(s)	41, 81
BstC8I	GCNNGC	2 cut(s)	72, 76
BstDEI	CTNAG	3 cut(s)	291, 311, 471
BstFNI	CGCG	3 cut(s)	192, 334, 343
BstH2I	RGCGCY	2 cut(s)	132, 159
BstHHI	GCGC	5 cut(s)	131, 158, 194, 334, 343
BstKTI	GATC	1 cut(s)	145
BstMBI	GATC	1 cut(s)	142
BstMCI	CGRYCG	1 cut(s)	111
BstPAI	GACNNNNGTC	1 cut(s)	99
BstUI	CGCG	3 cut(s)	192, 334, 343
BstV1I	GCAGC	9 cut(s)	18, 24, 27, 30, 33, 36, 39, 440, 453
BsuRI	GGCC	2 cut(s)	275, 415
Cac8I	GCNNGC	2 cut(s)	72, 76
CaiI	CAGNNNCTG	1 cut(s)	434
CfoI	GCGC	5 cut(s)	131, 158, 194, 334, 343
Cfr13I	GGNCC	1 cut(s)	414
CseI	GACGC	3 cut(s)	19, 30, 70
Csp6I	GTAC	1 cut(s)	475
CviJI	RGCY	9 cut(s)	9, 115, 218, 242, 275, 415, 444, 452, 461
CviKI_1	RGCY	9 cut(s)	9, 115, 218, 242, 275, 415, 444, 452, 461
CviQI	GTAC	1 cut(s)	475
DdeI	CTNAG	3 cut(s)	291, 311, 471
DpnI	GATC	1 cut(s)	144
DpnII	GATC	1 cut(s)	142
Eam1104I	CTCTTC	1 cut(s)	311
EarI	CTCTTC	1 cut(s)	311
Ecl136II	GAGCTC	1 cut(s)	115
Eco130I	CCWWGG	1 cut(s)	276
Eco24I	GRGCYC	1 cut(s)	117
Eco32I	GATATC	1 cut(s)	229
Eco53kI	GAGCTC	1 cut(s)	115
Eco88I	CYCGRG	1 cut(s)	116
EcoICRI	GAGCTC	1 cut(s)	115
EcoRV	GATATC	1 cut(s)	229
EcoT14I	CCWWGG	1 cut(s)	276
EcoT38I	GRGCYC	1 cut(s)	117
ErhI	CCWWGG	1 cut(s)	276
FaiI	YATR	3 cut(s)	233, 422, 447
FblI	GTMKAC	1 cut(s)	93
FriOI	GRGCYC	1 cut(s)	117
GlaI	GCGC	5 cut(s)	130, 157, 193, 333, 342
GsuI	CTGGAG	1 cut(s)	172
HaeII	RGCGCY	2 cut(s)	132, 159
HaeIII	GGCC	2 cut(s)	275, 415
HapII	CCGG	1 cut(s)	67
HgaI	GACGC	3 cut(s)	19, 30, 70
HhaI	GCGC	5 cut(s)	131, 158, 194, 334, 343
Hin1I	GRCGYC	2 cut(s)	41, 81
Hin6I	GCGC	5 cut(s)	129, 156, 192, 332, 341
HinP1I	GCGC	5 cut(s)	129, 156, 192, 332, 341
HincII	GTYRAC	1 cut(s)	94
HindII	GTYRAC	1 cut(s)	94
HinfI	GANTC	1 cut(s)	302
HpaII	CCGG	1 cut(s)	67
HphI	GGTGA	1 cut(s)	173
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188I	TCNGA	1 cut(s)	472
Hpy188III	TCNNGA	3 cut(s)	151, 203, 212
Hpy8I	GTNNAC	1 cut(s)	94
Hpy99I	CGWCG	7 cut(s)	46, 49, 86, 92, 95, 98, 414
HpyCH4III	ACNGT	1 cut(s)	98
HpyCH4IV	ACGT	1 cut(s)	409
HpyCH4V	TGCA	1 cut(s)	428
HpyF3I	CTNAG	3 cut(s)	291, 311, 471
HpySE526I	ACGT	1 cut(s)	409
Hsp92I	GRCGYC	2 cut(s)	41, 81
HspAI	GCGC	5 cut(s)	129, 156, 192, 332, 341
Kzo9I	GATC	1 cut(s)	142
LmnI	GCTCC	1 cut(s)	153
LpnPI	CCDG	8 cut(s)	56, 60, 80, 89, 136, 204, 236, 463
Lsp1109I	GCAGC	9 cut(s)	18, 24, 27, 30, 33, 36, 39, 440, 453
LweI	GCATC	1 cut(s)	440
MaeII	ACGT	1 cut(s)	409
MalI	GATC	1 cut(s)	144
MbiI	CCGCTC	1 cut(s)	121
MboI	GATC	1 cut(s)	142
MboII	GAAGA	1 cut(s)	328
MhlI	GDGCHC	1 cut(s)	117
MspI	CCGG	1 cut(s)	67
MvnI	CGCG	3 cut(s)	192, 334, 343
NdeII	GATC	1 cut(s)	142
PaeR7I	CTCGAG	1 cut(s)	116
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
PfeI	GAWTC	1 cut(s)	302
PshAI	GACNNNNGTC	1 cut(s)	99
Psp124BI	GAGCTC	1 cut(s)	117
PspPI	GGNCC	1 cut(s)	414
PspXI	VCTCGAGB	1 cut(s)	116
PstNI	CAGNNNCTG	1 cut(s)	434
RsaI	GTAC	1 cut(s)	476
RsaNI	GTAC	1 cut(s)	475
SacI	GAGCTC	1 cut(s)	117
SalI	GTCGAC	1 cut(s)	92
Sau3AI	GATC	1 cut(s)	142
Sau96I	GGNCC	1 cut(s)	414
SduI	GDGCHC	1 cut(s)	117
SfaNI	GCATC	1 cut(s)	440
Sfr274I	CTCGAG	1 cut(s)	116
SgrDI	CGTCGACG	1 cut(s)	92
SlaI	CTCGAG	1 cut(s)	116
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
SsiI	CCGC	3 cut(s)	10, 78, 121
SstI	GAGCTC	1 cut(s)	117
StyI	CCWWGG	1 cut(s)	276
TaaI	ACNGT	1 cut(s)	98
TaiI	ACGT	1 cut(s)	412
TaqI	TCGA	3 cut(s)	93, 117, 287
TaqII	GACCGA	1 cut(s)	125
TatI	WGTACW	1 cut(s)	474
TauI	GCSGC	3 cut(s)	12, 81, 124
TfiI	GAWTC	1 cut(s)	302
TseI	GCWGC	9 cut(s)	6, 12, 15, 18, 21, 24, 27, 428, 441
TspDTI	ATGAA	1 cut(s)	188
XhoI	CTCGAG	1 cut(s)	116
XmiI	GTMKAC	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.