Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015829.1

Orthogroup ID

OG0016411

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2339

Gene Structure 2339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015829.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

atggatttgggaagcgagaaaacgtcgtcgttcatgagcgattttctggaaaagtgcggtggctgtgccgttctggacggcgggtttgcgacggagctggaacgacatggagctgatctcaacgaccctctctggagcgccaaatgcctcgtcagttctcctcacctcgtccgtagggtacatttggactaccttgatgctggagcaaacatcataataaccgcatcttatcaggccacaattcagggttttgaggccaaaggtttctctaaagaagaagccaaagccttgctcaggaaaagtgtagaaattgcaatcgaggcacgagaaatttactatgacaaatgcaccaaaggttcttgggattttgtggacacaggaaagccttcaagaaatccagttctagttgcagcatctgtgggaagctatggagcctatttggctgatggttccgagtatagtggcaactacggcgatgcagtgactctagaaacgttgaaagatttccacagggaaagggttcagattctggccaactctggtgctgatctaattgcatttgagacgacaccgaataagctagaggccaaggcatatgctgaacttcttgaggaagaagcaatagatattccagcatggtttacttttgcttctaaagatggaatcaatgtggtgagtggtgattccatctttgagtgttcctctattgctaatgcatgcaagcaagttgttgctgttggaatcaactgcacaccacctagatttatccaggggttgatttcatctattcgaaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko01110 map00270 map01100 map01110

Pfam Domains

Protein Families

S-methyl_trans

Protein Analysis

265

Amino Acids

28.69

Weight (kDa)

4.9

Isoelectric Point (pI)

38.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016411)

Species	Orthologous Gene IDs
malus_domestica	MD12G1084900.v1.1
prunus_persica	Prupe.1G018900_v2.0.a1 Prupe.1G018900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0350231
rosa_laevigata	RLG00000010133 RLG00000034428
rosa_multiflora	Rmu_sc0000013.1_g000008 Rmu_sc0015829.1_g000001
rosa_samantha	Rh4AG011900 Rh4AG015300 Rh4BG010300 Rh4CG014800 Rh4CG016400 Rh4CG016500 Rh6AG322400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	57, 81, 222
AclI	AACGTT	1 cut(s)	494
AcoI	YGGCCR	1 cut(s)	531
AcsI	RAATTY	1 cut(s)	330
AfaI	GTAC	1 cut(s)	180
AfiI	CCNNNNNNNGG	1 cut(s)	294
AgsI	TTSAA	2 cut(s)	390, 499
AjnI	CCWGG	1 cut(s)	768
AluBI	AGCT	4 cut(s)	97, 113, 426, 580
AluI	AGCT	4 cut(s)	97, 113, 426, 580
Alw26I	GTCTC	1 cut(s)	557
AlwNI	CAGNNNCTG	2 cut(s)	416, 529
AoxI	GGCC	4 cut(s)	234, 255, 531, 585
ApeKI	GCWGC	1 cut(s)	410
ApoI	RAATTY	1 cut(s)	330
ArsI	GACNNNNNNTTYG	4 cut(s)	68, 100, 135, 167
Asp700I	GAANNNNTTC	3 cut(s)	385, 503, 519
AspLEI	GCGC	1 cut(s)	140
AsuHPI	GGTGA	3 cut(s)	155, 685, 692
AsuII	TTCGAA	1 cut(s)	790
BalI	TGGCCA	1 cut(s)	533
BauI	CACGAG	1 cut(s)	324
BbvI	GCAGC	1 cut(s)	422
BccI	CCATC	3 cut(s)	440, 653, 695
BceAI	ACGGC	3 cut(s)	53, 94, 487
BciT130I	CCWGG	1 cut(s)	770
BcoDI	GTCTC	1 cut(s)	557
BfaI	CTAG	4 cut(s)	404, 488, 581, 759
BfoI	RGCGCY	1 cut(s)	141
BglI	GCCNNNNNGGC	1 cut(s)	440
BisI	GCNGC	1 cut(s)	411
BlsI	GCNGC	1 cut(s)	412
Bme1390I	CCNGG	1 cut(s)	770
BmiI	GGNNCC	2 cut(s)	433, 451
BmrFI	CCNGG	1 cut(s)	770
BmsI	GCATC	4 cut(s)	187, 233, 422, 466
BplI	GAGNNNNNCTC	4 cut(s)	102, 134, 686, 718
BpmI	CTGGAG	2 cut(s)	154, 222
Bpu10I	CCTNAGC	1 cut(s)	293
Bpu14I	TTCGAA	1 cut(s)	790
BpuEI	CTTGAG	1 cut(s)	629
BsaJI	CCNNGG	2 cut(s)	588, 769
Bsc4I	CCNNNNNNNGG	1 cut(s)	294
Bse1I	ACTGG	1 cut(s)	398
BseBI	CCWGG	1 cut(s)	770
BseDI	CCNNGG	2 cut(s)	588, 769
BseLI	CCNNNNNNNGG	1 cut(s)	294
BseMII	CTCAG	1 cut(s)	307
BseNI	ACTGG	1 cut(s)	398
BseRI	GAGGAG	1 cut(s)	150
BseXI	GCAGC	1 cut(s)	422
BsgI	GTGCAG	1 cut(s)	733
BshFI	GGCC	4 cut(s)	236, 257, 533, 587
BslI	CCNNNNNNNGG	1 cut(s)	294
BsmAI	GTCTC	1 cut(s)	557
BsmBI	CGTCTC	1 cut(s)	557
BsnI	GGCC	4 cut(s)	236, 257, 533, 587
Bsp119I	TTCGAA	1 cut(s)	790
Bsp143I	GATC	2 cut(s)	115, 547
BspACI	CCGC	3 cut(s)	57, 81, 222
BspANI	GGCC	4 cut(s)	236, 257, 533, 587
BspCNI	CTCAG	1 cut(s)	306
BspHI	TCATGA	1 cut(s)	33
BspLI	GGNNCC	2 cut(s)	433, 451
BspT104I	TTCGAA	1 cut(s)	790
BsrI	ACTGG	1 cut(s)	398
BssECI	CCNNGG	2 cut(s)	588, 769
BssMI	GATC	2 cut(s)	115, 547
BssSI	CACGAG	1 cut(s)	324
BssT1I	CCWWGG	1 cut(s)	588
Bst2BI	CACGAG	1 cut(s)	324
Bst2UI	CCWGG	1 cut(s)	770
BstBI	TTCGAA	1 cut(s)	790
BstC8I	GCNNGC	2 cut(s)	718, 722
BstDEI	CTNAG	1 cut(s)	293
BstENI	CCTNNNNNAGG	1 cut(s)	292
BstH2I	RGCGCY	1 cut(s)	141
BstHHI	GCGC	1 cut(s)	140
BstKTI	GATC	2 cut(s)	118, 550
BstMAI	GTCTC	1 cut(s)	557
BstMBI	GATC	2 cut(s)	115, 547
BstMWI	GCNNNNNNNGC	4 cut(s)	144, 320, 440, 471
BstNI	CCWGG	1 cut(s)	770
BstNSI	RCATGY	1 cut(s)	720
BstSCI	CCNGG	1 cut(s)	768
BstV1I	GCAGC	1 cut(s)	422
BsuRI	GGCC	4 cut(s)	236, 257, 533, 587
BtgZI	GCGATG	1 cut(s)	489
BtsI	GCAGTG	1 cut(s)	486
BtsIMutI	CAGTG	1 cut(s)	486
Cac8I	GCNNGC	2 cut(s)	718, 722
CaiI	CAGNNNCTG	2 cut(s)	416, 529
CciI	TCATGA	1 cut(s)	33
CfoI	GCGC	1 cut(s)	140
Csp6I	GTAC	1 cut(s)	179
CviAII	CATG	4 cut(s)	34, 107, 636, 717
CviQI	GTAC	1 cut(s)	179
DdeI	CTNAG	1 cut(s)	293
DpnI	GATC	2 cut(s)	117, 549
DpnII	GATC	2 cut(s)	115, 547
EaeI	YGGCCR	1 cut(s)	531
Eco130I	CCWWGG	1 cut(s)	588
EcoNI	CCTNNNNNAGG	1 cut(s)	292
EcoRII	CCWGG	1 cut(s)	768
EcoT14I	CCWWGG	1 cut(s)	588
EcoT22I	ATGCAT	1 cut(s)	718
ErhI	CCWWGG	1 cut(s)	588
Esp3I	CGTCTC	1 cut(s)	557
FaeI	CATG	4 cut(s)	37, 110, 639, 720
FatI	CATG	4 cut(s)	33, 106, 635, 716
FauI	CCCGC	1 cut(s)	74
FauNDI	CATATG	1 cut(s)	595
Fnu4HI	GCNGC	1 cut(s)	411
Fsp4HI	GCNGC	1 cut(s)	411
FspBI	CTAG	4 cut(s)	404, 488, 581, 759
GlaI	GCGC	1 cut(s)	139
GluI	GCNGC	1 cut(s)	411
GsuI	CTGGAG	2 cut(s)	154, 222
HaeII	RGCGCY	1 cut(s)	141
HaeIII	GGCC	4 cut(s)	236, 257, 533, 587
HhaI	GCGC	1 cut(s)	140
Hin1II	CATG	4 cut(s)	37, 110, 639, 720
Hin6I	GCGC	1 cut(s)	138
HinP1I	GCGC	1 cut(s)	138
HinfI	GANTC	5 cut(s)	484, 526, 663, 683, 741
HphI	GGTGA	3 cut(s)	155, 685, 692
Hpy166II	GTNNAC	2 cut(s)	373, 642
Hpy188I	TCNGA	2 cut(s)	454, 525
Hpy188III	TCNNGA	8 cut(s)	34, 47, 74, 133, 295, 390, 488, 608
Hpy8I	GTNNAC	2 cut(s)	373, 642
Hpy99I	CGWCG	3 cut(s)	28, 31, 94
HpyAV	CCTTC	1 cut(s)	396
HpyCH4IV	ACGT	2 cut(s)	23, 494
HpyCH4V	TGCA	8 cut(s)	314, 348, 410, 479, 557, 716, 720, 750
HpyF10VI	GCNNNNNNNGC	4 cut(s)	144, 320, 440, 471
HpyF3I	CTNAG	1 cut(s)	293
HpySE526I	ACGT	2 cut(s)	23, 494
Hsp92II	CATG	4 cut(s)	37, 110, 639, 720
HspAI	GCGC	1 cut(s)	138
Kzo9I	GATC	2 cut(s)	115, 547
LmnI	GCTCC	5 cut(s)	94, 110, 135, 203, 431
Lsp1109I	GCAGC	1 cut(s)	422
LweI	GCATC	4 cut(s)	187, 233, 422, 466
MaeI	CTAG	4 cut(s)	404, 488, 581, 759
MaeII	ACGT	2 cut(s)	23, 494
MaeIII	GTNAC	1 cut(s)	481
MalI	GATC	2 cut(s)	117, 549
MboI	GATC	2 cut(s)	115, 547
MboII	GAAGA	2 cut(s)	287, 626
MlsI	TGGCCA	1 cut(s)	533
MluCI	AATT	4 cut(s)	240, 309, 330, 552
MluNI	TGGCCA	1 cut(s)	533
MlyI	GAGTC	1 cut(s)	478
MmeI	TCCRAC	1 cut(s)	718
MnlI	CCTC	9 cut(s)	138, 158, 171, 176, 247, 313, 577, 604, 712
Mox20I	TGGCCA	1 cut(s)	533
Mph1103I	ATGCAT	1 cut(s)	718
MroXI	GAANNNNTTC	3 cut(s)	385, 503, 519
MscI	TGGCCA	1 cut(s)	533
Msp20I	TGGCCA	1 cut(s)	533
MspR9I	CCNGG	1 cut(s)	770
MvaI	CCWGG	1 cut(s)	770
MwoI	GCNNNNNNNGC	4 cut(s)	144, 320, 440, 471
NdeI	CATATG	1 cut(s)	595
NdeII	GATC	2 cut(s)	115, 547
NlaIII	CATG	4 cut(s)	37, 110, 639, 720
NlaIV	GGNNCC	2 cut(s)	433, 451
NmuCI	GTSAC	1 cut(s)	481
NsiI	ATGCAT	1 cut(s)	718
NspI	RCATGY	1 cut(s)	720
NspV	TTCGAA	1 cut(s)	790
PaeI	GCATGC	1 cut(s)	720
PagI	TCATGA	1 cut(s)	33
PdmI	GAANNNNTTC	3 cut(s)	385, 503, 519
PfeI	GAWTC	4 cut(s)	526, 663, 683, 741
PkrI	GCNGC	1 cut(s)	412
PleI	GAGTC	1 cut(s)	478
PpsI	GAGTC	1 cut(s)	478
Psp1406I	AACGTT	1 cut(s)	494
Psp6I	CCWGG	1 cut(s)	768
PspGI	CCWGG	1 cut(s)	768
PspN4I	GGNNCC	2 cut(s)	433, 451
PstNI	CAGNNNCTG	2 cut(s)	416, 529
RsaI	GTAC	1 cut(s)	180
RsaNI	GTAC	1 cut(s)	179
SatI	GCNGC	1 cut(s)	411
Sau3AI	GATC	2 cut(s)	115, 547
SchI	GAGTC	1 cut(s)	478
ScrFI	CCNGG	1 cut(s)	770
SfaNI	GCATC	4 cut(s)	187, 233, 422, 466
SfuI	TTCGAA	1 cut(s)	790
SmlI	CTYRAG	1 cut(s)	608
SmoI	CTYRAG	1 cut(s)	608
SphI	GCATGC	1 cut(s)	720
Sse9I	AATT	4 cut(s)	240, 309, 330, 552
SsiI	CCGC	3 cut(s)	57, 81, 222
SspMI	CTAG	4 cut(s)	404, 488, 581, 759
StyD4I	CCNGG	1 cut(s)	768
StyI	CCWWGG	1 cut(s)	588
TaiI	ACGT	2 cut(s)	26, 497
TaqI	TCGA	2 cut(s)	318, 790
TasI	AATT	4 cut(s)	240, 309, 330, 552
TfiI	GAWTC	4 cut(s)	526, 663, 683, 741
TscAI	CASTG	1 cut(s)	486
TseFI	GTSAC	1 cut(s)	481
TseI	GCWGC	1 cut(s)	410
Tsp45I	GTSAC	1 cut(s)	481
TspDTI	ATGAA	2 cut(s)	22, 771
TspGWI	ACGGA	2 cut(s)	107, 161
TspRI	CASTG	1 cut(s)	486
XagI	CCTNNNNNAGG	1 cut(s)	292
XapI	RAATTY	1 cut(s)	330
XbaI	TCTAGA	1 cut(s)	487
XceI	RCATGY	1 cut(s)	720
XmnI	GAANNNNTTC	3 cut(s)	385, 503, 519
XspI	CTAG	4 cut(s)	404, 488, 581, 759
Zsp2I	ATGCAT	1 cut(s)	718

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.