Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000013.1

Orthogroup ID

OG0016411

Physical Location & Seq

Genomic Coordinates Reverse (-)

22312 .. 23610

Gene Structure 1299 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000013.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

atgggtttgggaagcaaggtgaaaacgtcgtcgttcaagagcgattttctggagaagtgcagtggctgtgccgttctggacggcgggtttgcgacggagctggaacgacatggagctgatctcaatgatcctctctggagtgccaaatgcctcgtcagttctcacctcgtccgaagggtacatttagactaccttgatgctggagcaaacatcataataaccgcatcttatcaggccacaattcagggttttgaggccaaaggtttctctaaagaagaggccaaacctctggtcaggaaaagtgtagaaattgcaatcgaggcacgagaaatttactatgacaaatgcaccaaaggttcttgggattttgtggacacaggaaagccttcaagacatccagttctagttgcagcatctgtgggaagctatggagcctatttggctgatggttccgggtatagtggcaactacggcgaagcagtgactctagaaacattgaaagatttccacagggaaagggttcagattctggccaactctggtgctgatctaattgcatttgagacaaacaccgaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko01110 map00270 map01100 map01110

Pfam Domains

Protein Families

S-methyl_trans

Protein Analysis

192

Amino Acids

20.81

Weight (kDa)

5.58

Isoelectric Point (pI)

22.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016411)

Species	Orthologous Gene IDs
malus_domestica	MD12G1084900.v1.1
prunus_persica	Prupe.1G018900_v2.0.a1 Prupe.1G018900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0350231
rosa_laevigata	RLG00000010133 RLG00000034428
rosa_multiflora	Rmu_sc0000013.1_g000008 Rmu_sc0015829.1_g000001
rosa_samantha	Rh4AG011900 Rh4AG015300 Rh4BG010300 Rh4CG014800 Rh4CG016400 Rh4CG016500 Rh6AG322400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	84, 222
AclWI	GGATC	1 cut(s)	122
AcoI	YGGCCR	1 cut(s)	531
AcsI	RAATTY	1 cut(s)	330
AfaI	GTAC	1 cut(s)	180
AgsI	TTSAA	3 cut(s)	37, 390, 499
AluBI	AGCT	3 cut(s)	100, 116, 426
AluI	AGCT	3 cut(s)	100, 116, 426
Alw26I	GTCTC	1 cut(s)	557
AlwI	GGATC	1 cut(s)	122
AlwNI	CAGNNNCTG	3 cut(s)	66, 416, 529
AoxI	GGCC	4 cut(s)	234, 255, 279, 531
ApeKI	GCWGC	1 cut(s)	410
ApoI	RAATTY	1 cut(s)	330
ArsI	GACNNNNNNTTYG	6 cut(s)	71, 103, 138, 170, 276, 308
Asp700I	GAANNNNTTC	3 cut(s)	385, 503, 519
AsuC2I	CCSGG	1 cut(s)	454
AsuHPI	GGTGA	2 cut(s)	31, 155
BalI	TGGCCA	1 cut(s)	533
BauI	CACGAG	1 cut(s)	324
BbvI	GCAGC	1 cut(s)	422
BccI	CCATC	1 cut(s)	440
BceAI	ACGGC	3 cut(s)	56, 97, 487
BcnI	CCSGG	1 cut(s)	454
BcoDI	GTCTC	1 cut(s)	557
BfaI	CTAG	2 cut(s)	404, 488
BglI	GCCNNNNNGGC	1 cut(s)	440
BisI	GCNGC	1 cut(s)	411
BlsI	GCNGC	1 cut(s)	412
Bme1390I	CCNGG	1 cut(s)	454
BmiI	GGNNCC	2 cut(s)	433, 451
BmrFI	CCNGG	1 cut(s)	454
BmsI	GCATC	3 cut(s)	187, 233, 422
BplI	GAGNNNNNCTC	2 cut(s)	105, 137
BpmI	CTGGAG	3 cut(s)	71, 157, 222
BpuMI	CCSGG	1 cut(s)	454
Bse1I	ACTGG	1 cut(s)	398
BseGI	GGATG	1 cut(s)	394
BseNI	ACTGG	1 cut(s)	398
BseXI	GCAGC	1 cut(s)	422
BsgI	GTGCAG	1 cut(s)	79
BshFI	GGCC	4 cut(s)	236, 257, 281, 533
BsiSI	CCGG	1 cut(s)	453
BsmAI	GTCTC	1 cut(s)	557
BsnI	GGCC	4 cut(s)	236, 257, 281, 533
Bsp143I	GATC	3 cut(s)	118, 127, 547
BspACI	CCGC	2 cut(s)	84, 222
BspANI	GGCC	4 cut(s)	236, 257, 281, 533
BspLI	GGNNCC	2 cut(s)	433, 451
BspPI	GGATC	1 cut(s)	122
BsrI	ACTGG	1 cut(s)	398
BssMI	GATC	3 cut(s)	118, 127, 547
BssSI	CACGAG	1 cut(s)	324
Bst2BI	CACGAG	1 cut(s)	324
Bst6I	CTCTTC	1 cut(s)	270
BstF5I	GGATG	1 cut(s)	394
BstKTI	GATC	3 cut(s)	121, 130, 550
BstMAI	GTCTC	1 cut(s)	557
BstMBI	GATC	3 cut(s)	118, 127, 547
BstMWI	GCNNNNNNNGC	3 cut(s)	320, 440, 471
BstSCI	CCNGG	1 cut(s)	452
BstV1I	GCAGC	1 cut(s)	422
BstXI	CCANNNNNNTGG	1 cut(s)	289
BsuRI	GGCC	4 cut(s)	236, 257, 281, 533
BtsCI	GGATG	1 cut(s)	394
BtsI	GCAGTG	2 cut(s)	67, 486
BtsIMutI	CAGTG	2 cut(s)	67, 486
CaiI	CAGNNNCTG	3 cut(s)	66, 416, 529
Csp6I	GTAC	1 cut(s)	179
CviAII	CATG	1 cut(s)	110
CviQI	GTAC	1 cut(s)	179
DpnI	GATC	3 cut(s)	120, 129, 549
DpnII	GATC	3 cut(s)	118, 127, 547
EaeI	YGGCCR	1 cut(s)	531
Eam1104I	CTCTTC	1 cut(s)	270
EarI	CTCTTC	1 cut(s)	270
FaeI	CATG	1 cut(s)	113
FaiI	YATR	5 cut(s)	111, 215, 339, 429, 459
FatI	CATG	1 cut(s)	109
FauI	CCCGC	1 cut(s)	77
Fnu4HI	GCNGC	1 cut(s)	411
FokI	GGATG	1 cut(s)	381
Fsp4HI	GCNGC	1 cut(s)	411
FspBI	CTAG	2 cut(s)	404, 488
GluI	GCNGC	1 cut(s)	411
GsuI	CTGGAG	3 cut(s)	71, 157, 222
HaeIII	GGCC	4 cut(s)	236, 257, 281, 533
HapII	CCGG	1 cut(s)	453
Hin1II	CATG	1 cut(s)	113
HinfI	GANTC	2 cut(s)	484, 526
HpaII	CCGG	1 cut(s)	453
HphI	GGTGA	2 cut(s)	31, 155
Hpy166II	GTNNAC	1 cut(s)	373
Hpy188I	TCNGA	2 cut(s)	173, 525
Hpy188III	TCNNGA	7 cut(s)	37, 50, 77, 136, 295, 390, 488
Hpy8I	GTNNAC	1 cut(s)	373
Hpy99I	CGWCG	3 cut(s)	31, 34, 97
HpyAV	CCTTC	2 cut(s)	168, 396
HpyCH4IV	ACGT	1 cut(s)	26
HpyCH4V	TGCA	5 cut(s)	60, 314, 348, 410, 557
HpyF10VI	GCNNNNNNNGC	3 cut(s)	320, 440, 471
HpySE526I	ACGT	1 cut(s)	26
Hsp92II	CATG	1 cut(s)	113
Kzo9I	GATC	3 cut(s)	118, 127, 547
LmnI	GCTCC	4 cut(s)	97, 113, 203, 431
Lsp1109I	GCAGC	1 cut(s)	422
LweI	GCATC	3 cut(s)	187, 233, 422
MaeI	CTAG	2 cut(s)	404, 488
MaeII	ACGT	1 cut(s)	26
MaeIII	GTNAC	1 cut(s)	481
MalI	GATC	3 cut(s)	120, 129, 549
MboI	GATC	3 cut(s)	118, 127, 547
MboII	GAAGA	1 cut(s)	287
MlsI	TGGCCA	1 cut(s)	533
MluCI	AATT	4 cut(s)	240, 309, 330, 552
MluNI	TGGCCA	1 cut(s)	533
MlyI	GAGTC	1 cut(s)	478
MnlI	CCTC	7 cut(s)	141, 161, 176, 247, 271, 297, 313
Mox20I	TGGCCA	1 cut(s)	533
MroXI	GAANNNNTTC	3 cut(s)	385, 503, 519
MscI	TGGCCA	1 cut(s)	533
Msp20I	TGGCCA	1 cut(s)	533
MspI	CCGG	1 cut(s)	453
MspR9I	CCNGG	1 cut(s)	454
MwoI	GCNNNNNNNGC	3 cut(s)	320, 440, 471
NciI	CCSGG	1 cut(s)	454
NdeII	GATC	3 cut(s)	118, 127, 547
NlaIII	CATG	1 cut(s)	113
NlaIV	GGNNCC	2 cut(s)	433, 451
NmuCI	GTSAC	1 cut(s)	481
PdmI	GAANNNNTTC	3 cut(s)	385, 503, 519
PfeI	GAWTC	1 cut(s)	526
PkrI	GCNGC	1 cut(s)	412
PleI	GAGTC	1 cut(s)	478
PpsI	GAGTC	1 cut(s)	478
PspN4I	GGNNCC	2 cut(s)	433, 451
PstNI	CAGNNNCTG	3 cut(s)	66, 416, 529
RsaI	GTAC	1 cut(s)	180
RsaNI	GTAC	1 cut(s)	179
SatI	GCNGC	1 cut(s)	411
Sau3AI	GATC	3 cut(s)	118, 127, 547
SchI	GAGTC	1 cut(s)	478
ScrFI	CCNGG	1 cut(s)	454
SfaNI	GCATC	3 cut(s)	187, 233, 422
Sse9I	AATT	4 cut(s)	240, 309, 330, 552
SsiI	CCGC	2 cut(s)	84, 222
SspMI	CTAG	2 cut(s)	404, 488
StyD4I	CCNGG	1 cut(s)	452
TaiI	ACGT	1 cut(s)	29
TaqI	TCGA	1 cut(s)	318
TasI	AATT	4 cut(s)	240, 309, 330, 552
TfiI	GAWTC	1 cut(s)	526
TscAI	CASTG	2 cut(s)	67, 486
TseFI	GTSAC	1 cut(s)	481
TseI	GCWGC	1 cut(s)	410
Tsp45I	GTSAC	1 cut(s)	481
TspGWI	ACGGA	1 cut(s)	110
TspRI	CASTG	2 cut(s)	67, 486
XapI	RAATTY	1 cut(s)	330
XbaI	TCTAGA	1 cut(s)	487
XmnI	GAANNNNTTC	3 cut(s)	385, 503, 519
XspI	CTAG	2 cut(s)	404, 488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.