Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016411

Physical Location & Seq

Genomic Coordinates Forward (+)

43414101 .. 43414358

Gene Structure 258 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ57611

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGCGACGGGACCTCGGTGCCACCTCTAGGAGAACAACGTCGTTTTGGACACCAACCCCTCCACCCCCAAGCTCGATCGCAAAGACGCCAAGAAAATCATCGAGTGATTCACCCCCGATCAGCGTTGAAACTGAGTTGTCATCATCAATGAGGGAGTTTCTCCGGCAAGCCGGCTGCGTGGCAGTCGTCGACGGTGGTCTAGCGACTGAGCTTGAGTGGCACGGTGCTGATCTCAAAGATCCTCTCTGGAGATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0006082 GO:0006520 GO:0006555 GO:0006575 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008172 GO:0008652 GO:0008757 GO:0008898 GO:0009058 GO:0009066 GO:0009067 GO:0009086 GO:0009987 GO:0016053 GO:0016740 GO:0016741 GO:0019752 GO:0032259 GO:0033477 GO:0033528 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko01110 map00270 map01100 map01110

Pfam Domains

Protein Families

S-methyl_trans

Protein Analysis

85

Amino Acids

9.3

Weight (kDa)

7.96

Isoelectric Point (pI)

62.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016411)

Species	Orthologous Gene IDs
malus_domestica	MD12G1084900.v1.1
prunus_persica	Prupe.1G018900_v2.0.a1 Prupe.1G018900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0350231
rosa_laevigata	RLG00000010133 RLG00000034428
rosa_multiflora	Rmu_sc0000013.1_g000008 Rmu_sc0015829.1_g000001
rosa_samantha	Rh4AG011900 Rh4AG015300 Rh4BG010300 Rh4CG014800 Rh4CG016400 Rh4CG016500 Rh6AG322400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	17
AccI	GTMKAC	1 cut(s)	189
AclWI	GGATC	1 cut(s)	233
AcyI	GRCGYC	1 cut(s)	86
AfiI	CCNNNNNNNGG	1 cut(s)	27
AgsI	TTSAA	1 cut(s)	128
AluBI	AGCT	2 cut(s)	72, 211
AluI	AGCT	2 cut(s)	72, 211
AlwI	GGATC	1 cut(s)	233
ApeKI	GCWGC	1 cut(s)	174
AspS9I	GGNCC	1 cut(s)	10
AsuHPI	GGTGA	1 cut(s)	102
AvaII	GGWCC	1 cut(s)	10
BanI	GGYRCC	1 cut(s)	17
BbvI	GCAGC	1 cut(s)	161
BfaI	CTAG	2 cut(s)	27, 200
BglII	AGATCT	1 cut(s)	251
BisI	GCNGC	1 cut(s)	175
BlsI	GCNGC	1 cut(s)	176
Bme18I	GGWCC	1 cut(s)	10
BmgT120I	GGNCC	1 cut(s)	10
BmiI	GGNNCC	2 cut(s)	11, 19
BoxI	GACNNNNGTC	1 cut(s)	195
BpuEI	CTTGAG	1 cut(s)	233
BsaHI	GRCGYC	1 cut(s)	86
BsaJI	CCNNGG	1 cut(s)	13
Bsc4I	CCNNNNNNNGG	1 cut(s)	27
Bse118I	RCCGGY	1 cut(s)	170
BseDI	CCNNGG	1 cut(s)	13
BseLI	CCNNNNNNNGG	1 cut(s)	27
BseMII	CTCAG	2 cut(s)	123, 198
BseXI	GCAGC	1 cut(s)	161
Bsh1285I	CGRYCG	1 cut(s)	78
BshNI	GGYRCC	1 cut(s)	17
BsiEI	CGRYCG	1 cut(s)	78
BsiSI	CCGG	2 cut(s)	163, 171
BslFI	GGGAC	1 cut(s)	23
BslI	CCNNNNNNNGG	1 cut(s)	27
BsmFI	GGGAC	1 cut(s)	23
Bsp143I	GATC	5 cut(s)	75, 117, 229, 238, 251
BspCNI	CTCAG	2 cut(s)	124, 199
BspLI	GGNNCC	2 cut(s)	11, 19
BspPI	GGATC	1 cut(s)	233
BspT107I	GGYRCC	1 cut(s)	17
BsrFI	RCCGGY	1 cut(s)	170
BssAI	RCCGGY	1 cut(s)	170
BssECI	CCNNGG	1 cut(s)	13
BssMI	GATC	5 cut(s)	75, 117, 229, 238, 251
BssNI	GRCGYC	1 cut(s)	86
Bst4CI	ACNGT	2 cut(s)	194, 224
BstACI	GRCGYC	1 cut(s)	86
BstC8I	GCNNGC	2 cut(s)	168, 172
BstDEI	CTNAG	2 cut(s)	132, 207
BstKTI	GATC	5 cut(s)	78, 120, 232, 241, 254
BstMBI	GATC	5 cut(s)	75, 117, 229, 238, 251
BstMCI	CGRYCG	1 cut(s)	78
BstMWI	GCNNNNNNNGC	1 cut(s)	217
BstPAI	GACNNNNGTC	1 cut(s)	195
BstV1I	GCAGC	1 cut(s)	161
BstX2I	RGATCY	2 cut(s)	238, 251
BstYI	RGATCY	2 cut(s)	238, 251
Cac8I	GCNNGC	2 cut(s)	168, 172
Cfr10I	RCCGGY	1 cut(s)	170
Cfr13I	GGNCC	1 cut(s)	10
CseI	GACGC	1 cut(s)	94
CviJI	RGCY	4 cut(s)	72, 170, 174, 211
CviKI_1	RGCY	4 cut(s)	72, 170, 174, 211
DdeI	CTNAG	2 cut(s)	132, 207
DpnI	GATC	5 cut(s)	77, 119, 231, 240, 253
DpnII	GATC	5 cut(s)	75, 117, 229, 238, 251
Eco47I	GGWCC	1 cut(s)	10
EcoO109I	RGGNCCY	1 cut(s)	10
FaqI	GGGAC	1 cut(s)	23
FblI	GTMKAC	1 cut(s)	189
Fnu4HI	GCNGC	1 cut(s)	175
Fsp4HI	GCNGC	1 cut(s)	175
FspBI	CTAG	2 cut(s)	27, 200
GluI	GCNGC	1 cut(s)	175
HapII	CCGG	2 cut(s)	163, 171
HgaI	GACGC	1 cut(s)	94
Hin1I	GRCGYC	1 cut(s)	86
HincII	GTYRAC	1 cut(s)	190
HindII	GTYRAC	1 cut(s)	190
HinfI	GANTC	1 cut(s)	107
HpaII	CCGG	2 cut(s)	163, 171
HphI	GGTGA	1 cut(s)	102
Hpy166II	GTNNAC	1 cut(s)	190
Hpy188III	TCNNGA	2 cut(s)	247, 255
Hpy8I	GTNNAC	1 cut(s)	190
Hpy99I	CGWCG	4 cut(s)	9, 43, 191, 194
HpyCH4III	ACNGT	2 cut(s)	194, 224
HpyCH4IV	ACGT	1 cut(s)	38
HpyF10VI	GCNNNNNNNGC	1 cut(s)	217
HpyF3I	CTNAG	2 cut(s)	132, 207
HpySE526I	ACGT	1 cut(s)	38
Hsp92I	GRCGYC	1 cut(s)	86
KroI	GCCGGC	1 cut(s)	170
KroNI	GCCGGC	1 cut(s)	172
Kzo9I	GATC	5 cut(s)	75, 117, 229, 238, 251
LpnPI	CCDG	3 cut(s)	176, 184, 232
Lsp1109I	GCAGC	1 cut(s)	161
MaeI	CTAG	2 cut(s)	27, 200
MaeII	ACGT	1 cut(s)	38
MalI	GATC	5 cut(s)	77, 119, 231, 240, 253
MboI	GATC	5 cut(s)	75, 117, 229, 238, 251
MflI	RGATCY	2 cut(s)	238, 251
MnlI	CCTC	5 cut(s)	23, 34, 69, 144, 252
MroNI	GCCGGC	1 cut(s)	170
MspI	CCGG	2 cut(s)	163, 171
MwoI	GCNNNNNNNGC	1 cut(s)	217
NaeI	GCCGGC	1 cut(s)	172
NdeII	GATC	5 cut(s)	75, 117, 229, 238, 251
NgoMIV	GCCGGC	1 cut(s)	170
NlaIV	GGNNCC	2 cut(s)	11, 19
PdiI	GCCGGC	1 cut(s)	172
PfeI	GAWTC	1 cut(s)	107
PkrI	GCNGC	1 cut(s)	176
Ple19I	CGATCG	1 cut(s)	78
PpuMI	RGGWCCY	1 cut(s)	10
PshAI	GACNNNNGTC	1 cut(s)	195
Psp5II	RGGWCCY	1 cut(s)	10
PspN4I	GGNNCC	2 cut(s)	11, 19
PspPI	GGNCC	1 cut(s)	10
PspPPI	RGGWCCY	1 cut(s)	10
PsuI	RGATCY	2 cut(s)	238, 251
PvuI	CGATCG	1 cut(s)	78
SalI	GTCGAC	1 cut(s)	188
SatI	GCNGC	1 cut(s)	175
Sau3AI	GATC	5 cut(s)	75, 117, 229, 238, 251
Sau96I	GGNCC	1 cut(s)	10
SetI	ASST	5 cut(s)	15, 26, 41, 74, 213
SgrDI	CGTCGACG	1 cut(s)	188
SinI	GGWCC	1 cut(s)	10
SmlI	CTYRAG	1 cut(s)	212
SmoI	CTYRAG	1 cut(s)	212
SspMI	CTAG	2 cut(s)	27, 200
TaaI	ACNGT	2 cut(s)	194, 224
TaiI	ACGT	1 cut(s)	41
TaqI	TCGA	3 cut(s)	74, 101, 189
TfiI	GAWTC	1 cut(s)	107
TseI	GCWGC	1 cut(s)	174
VpaK11BI	GGWCC	1 cut(s)	10
XmiI	GTMKAC	1 cut(s)	189
XspI	CTAG	2 cut(s)	27, 200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.