Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0009139

Physical Location & Seq

Genomic Coordinates Reverse (-)

8941924 .. 8944452

Gene Structure 2529 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1121400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGATGCGGAGGCAGCAGGAACAAGACCAACAATCTAGGGTTTTCTACGAGCTATCGGCTCTGGTTCTTAACCTCCTCCGATCTCCACCCACGCCGATTCAATTCTCCGATAACTCCACGGTGATGCCGCCGTCTTCGTCTTCGTCGTCGTTGAGGCGGCCGCCGGCGGCGTCGACGGCGCAGATCTCTCCGGCTGGGTTCGCGTCGTTGATGCTGGGGATTTCGATGGCTCTGATGCTGTGCGGATCGGTGACTTTCTTCATTGGGTTCTTATTGATGCCGTGGGTGCTGGGATTGGTGATGGTGTTGTATGTGGCGGGGATCCTATGGAGCCTCTCCGTCTTGGGGAAGTCGATTCTTTGCTACGCCTCTGCTCCGTCGACACCGCGGAAGGATATTCCTGCATGGAAGCTATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

140

Amino Acids

15.15

Weight (kDa)

9.78

Isoelectric Point (pI)

74.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27290 AT1G27290
fragaria_vesca	FvH4_4g23540 FvH4_4g23540 FvH4_4g23540
malus_domestica	MD13G1121400.v1.1 MD16G1121700.v1.1
prunus_persica	Prupe.1G223700_v2.0.a1 Prupe.1G223700_v2.0.a1 Prupe.1G223700_v2.0.a1 Prupe.1G223700_v2.0.a1
pyrus_communis	pycom13g10580 pycom16g10410
rosa_chinensis	RchiOBHm_Chr4g0429941
rosa_laevigata	RLG00000007019
rosa_roxburghii	Rroxscaffold_5G00371770
rosa_rugosa	Rorug04G0239200 Rorug04G0239300 Rorug04G0239400
rosa_samantha	Rh4AG295900 Rh4DG299800
rosa_wichuraiana	Rw4G025630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	173, 380
AccII	CGCG	2 cut(s)	203, 388
AciI	CCGC	9 cut(s)	7, 128, 157, 161, 167, 243, 317, 386, 388
AclWI	GGATC	3 cut(s)	253, 316, 329
AcoI	YGGCCR	1 cut(s)	158
AcyI	GRCGYC	1 cut(s)	170
AfiI	CCNNNNNNNGG	1 cut(s)	345
AgsI	TTSAA	1 cut(s)	101
AluBI	AGCT	2 cut(s)	52, 412
AluI	AGCT	2 cut(s)	52, 412
AlwI	GGATC	3 cut(s)	253, 316, 329
AoxI	GGCC	1 cut(s)	158
ApeKI	GCWGC	1 cut(s)	13
AspLEI	GCGC	1 cut(s)	181
AsuHPI	GGTGA	3 cut(s)	133, 262, 310
BamHI	GGATCC	1 cut(s)	321
BbsI	GAAGAC	2 cut(s)	126, 132
BbvI	GCAGC	1 cut(s)	25
BccI	CCATC	2 cut(s)	220, 295
BceAI	ACGGC	3 cut(s)	115, 192, 265
BfaI	CTAG	1 cut(s)	36
BglII	AGATCT	1 cut(s)	183
BisI	GCNGC	5 cut(s)	14, 128, 158, 161, 168
BlsI	GCNGC	5 cut(s)	15, 129, 159, 162, 169
BmiI	GGNNCC	2 cut(s)	323, 332
BmsI	GCATC	4 cut(s)	114, 201, 225, 267
BpiI	GAAGAC	2 cut(s)	126, 132
BsaHI	GRCGYC	1 cut(s)	170
BsaJI	CCNNGG	3 cut(s)	117, 281, 386
Bsc4I	CCNNNNNNNGG	1 cut(s)	345
Bse118I	RCCGGY	1 cut(s)	163
BseDI	CCNNGG	3 cut(s)	117, 281, 386
BseLI	CCNNNNNNNGG	1 cut(s)	345
BseRI	GAGGAG	1 cut(s)	65
BseX3I	CGGCCG	1 cut(s)	158
BseXI	GCAGC	1 cut(s)	25
BseYI	CCCAGC	3 cut(s)	194, 214, 289
Bsh1236I	CGCG	2 cut(s)	203, 388
Bsh1285I	CGRYCG	1 cut(s)	161
BshFI	GGCC	1 cut(s)	160
BsiEI	CGRYCG	1 cut(s)	161
BsiSI	CCGG	2 cut(s)	164, 191
BslI	CCNNNNNNNGG	1 cut(s)	345
BsnI	GGCC	1 cut(s)	160
Bsp143I	GATC	4 cut(s)	80, 183, 245, 321
BspACI	CCGC	9 cut(s)	7, 128, 157, 161, 167, 243, 317, 386, 388
BspANI	GGCC	1 cut(s)	160
BspFNI	CGCG	2 cut(s)	203, 388
BspLI	GGNNCC	2 cut(s)	323, 332
BspPI	GGATC	3 cut(s)	253, 316, 329
BsrFI	RCCGGY	1 cut(s)	163
BssAI	RCCGGY	1 cut(s)	163
BssECI	CCNNGG	3 cut(s)	117, 281, 386
BssMI	GATC	4 cut(s)	80, 183, 245, 321
BssNI	GRCGYC	1 cut(s)	170
Bst4CI	ACNGT	1 cut(s)	121
BstACI	GRCGYC	1 cut(s)	170
BstC8I	GCNNGC	1 cut(s)	165
BstDSI	CCRYGG	3 cut(s)	117, 281, 386
BstFNI	CGCG	2 cut(s)	203, 388
BstHHI	GCGC	1 cut(s)	181
BstKTI	GATC	4 cut(s)	83, 186, 248, 324
BstMBI	GATC	4 cut(s)	80, 183, 245, 321
BstMCI	CGRYCG	1 cut(s)	161
BstMWI	GCNNNNNNNGC	4 cut(s)	13, 176, 200, 286
BstUI	CGCG	2 cut(s)	203, 388
BstV1I	GCAGC	1 cut(s)	25
BstV2I	GAAGAC	2 cut(s)	126, 132
BstX2I	RGATCY	2 cut(s)	183, 321
BstYI	RGATCY	2 cut(s)	183, 321
BstZI	CGGCCG	1 cut(s)	158
BsuRI	GGCC	1 cut(s)	160
BtgI	CCRYGG	3 cut(s)	117, 281, 386
Cac8I	GCNNGC	1 cut(s)	165
CciNI	GCGGCCGC	1 cut(s)	158
CfoI	GCGC	1 cut(s)	181
Cfr10I	RCCGGY	1 cut(s)	163
Cfr42I	CCGCGG	1 cut(s)	389
CseI	GACGC	2 cut(s)	159, 192
CviAII	CATG	1 cut(s)	405
CviJI	RGCY	7 cut(s)	52, 59, 160, 194, 230, 333, 412
CviKI_1	RGCY	7 cut(s)	52, 59, 160, 194, 230, 333, 412
DpnI	GATC	4 cut(s)	82, 185, 247, 323
DpnII	GATC	4 cut(s)	80, 183, 245, 321
EaeI	YGGCCR	1 cut(s)	158
EagI	CGGCCG	1 cut(s)	158
EclXI	CGGCCG	1 cut(s)	158
Eco52I	CGGCCG	1 cut(s)	158
FaeI	CATG	1 cut(s)	408
FaiI	YATR	3 cut(s)	312, 328, 406
FatI	CATG	1 cut(s)	404
FauI	CCCGC	1 cut(s)	310
FblI	GTMKAC	2 cut(s)	173, 380
Fnu4HI	GCNGC	5 cut(s)	14, 128, 158, 161, 168
Fsp4HI	GCNGC	5 cut(s)	14, 128, 158, 161, 168
FspBI	CTAG	1 cut(s)	36
GlaI	GCGC	1 cut(s)	180
GluI	GCNGC	5 cut(s)	14, 128, 158, 161, 168
GsaI	CCCAGC	3 cut(s)	198, 218, 293
HaeIII	GGCC	1 cut(s)	160
HapII	CCGG	2 cut(s)	164, 191
HgaI	GACGC	2 cut(s)	159, 192
HhaI	GCGC	1 cut(s)	181
Hin1I	GRCGYC	1 cut(s)	170
Hin1II	CATG	1 cut(s)	408
Hin6I	GCGC	1 cut(s)	179
HinP1I	GCGC	1 cut(s)	179
HincII	GTYRAC	2 cut(s)	174, 381
HindII	GTYRAC	2 cut(s)	174, 381
HinfI	GANTC	2 cut(s)	97, 355
HpaII	CCGG	2 cut(s)	164, 191
HphI	GGTGA	3 cut(s)	133, 262, 310
Hpy166II	GTNNAC	2 cut(s)	174, 381
Hpy188I	TCNGA	3 cut(s)	80, 109, 234
Hpy8I	GTNNAC	2 cut(s)	174, 381
Hpy99I	CGWCG	6 cut(s)	148, 151, 175, 178, 208, 382
HpyAV	CCTTC	1 cut(s)	385
HpyCH4III	ACNGT	1 cut(s)	121
HpyCH4V	TGCA	1 cut(s)	404
HpyF10VI	GCNNNNNNNGC	4 cut(s)	13, 176, 200, 286
Hsp92I	GRCGYC	1 cut(s)	170
Hsp92II	CATG	1 cut(s)	408
HspAI	GCGC	1 cut(s)	179
KroI	GCCGGC	1 cut(s)	163
KroNI	GCCGGC	1 cut(s)	165
KspI	CCGCGG	1 cut(s)	389
Kzo9I	GATC	4 cut(s)	80, 183, 245, 321
LmnI	GCTCC	2 cut(s)	330, 379
LpnPI	CCDG	8 cut(s)	2, 47, 177, 180, 200, 204, 275, 414
Lsp1109I	GCAGC	1 cut(s)	25
LweI	GCATC	4 cut(s)	114, 201, 225, 267
MaeI	CTAG	1 cut(s)	36
MaeIII	GTNAC	1 cut(s)	250
MalI	GATC	4 cut(s)	82, 185, 247, 323
MboI	GATC	4 cut(s)	80, 183, 245, 321
MboII	GAAGA	3 cut(s)	126, 132, 250
MflI	RGATCY	2 cut(s)	183, 321
MluCI	AATT	1 cut(s)	101
MnlI	CCTC	6 cut(s)	3, 83, 86, 147, 344, 379
MreI	CGCCGGCG	1 cut(s)	163
MroNI	GCCGGC	1 cut(s)	163
MseI	TTAA	1 cut(s)	69
MslI	CAYNNNNRTG	1 cut(s)	122
MspA1I	CMGCKG	1 cut(s)	388
MspI	CCGG	2 cut(s)	164, 191
MvnI	CGCG	2 cut(s)	203, 388
MwoI	GCNNNNNNNGC	4 cut(s)	13, 176, 200, 286
NaeI	GCCGGC	1 cut(s)	165
NdeII	GATC	4 cut(s)	80, 183, 245, 321
NgoMIV	GCCGGC	1 cut(s)	163
NlaIII	CATG	1 cut(s)	408
NlaIV	GGNNCC	2 cut(s)	323, 332
NmuCI	GTSAC	1 cut(s)	250
NotI	GCGGCCGC	1 cut(s)	158
PcsI	WCGNNNNNNNCGW	1 cut(s)	143
PdiI	GCCGGC	1 cut(s)	165
PfeI	GAWTC	2 cut(s)	97, 355
PkrI	GCNGC	5 cut(s)	15, 129, 159, 162, 169
PspFI	CCCAGC	3 cut(s)	194, 214, 289
PspN4I	GGNNCC	2 cut(s)	323, 332
PsuI	RGATCY	2 cut(s)	183, 321
RseI	CAYNNNNRTG	1 cut(s)	122
SacII	CCGCGG	1 cut(s)	389
SalI	GTCGAC	2 cut(s)	172, 379
SaqAI	TTAA	1 cut(s)	69
SatI	GCNGC	5 cut(s)	14, 128, 158, 161, 168
Sau3AI	GATC	4 cut(s)	80, 183, 245, 321
SetI	ASST	3 cut(s)	54, 75, 414
SfaNI	GCATC	4 cut(s)	114, 201, 225, 267
Sfr303I	CCGCGG	1 cut(s)	389
SgrAI	CRCCGGYG	1 cut(s)	163
SgrBI	CCGCGG	1 cut(s)	389
SgrDI	CGTCGACG	1 cut(s)	172
SmiMI	CAYNNNNRTG	1 cut(s)	122
Sse9I	AATT	1 cut(s)	101
SsiI	CCGC	9 cut(s)	7, 128, 157, 161, 167, 243, 317, 386, 388
SspMI	CTAG	1 cut(s)	36
TaaI	ACNGT	1 cut(s)	121
TaqI	TCGA	4 cut(s)	173, 224, 353, 380
TasI	AATT	1 cut(s)	101
TauI	GCSGC	4 cut(s)	130, 160, 163, 170
TfiI	GAWTC	2 cut(s)	97, 355
Tru1I	TTAA	1 cut(s)	69
Tru9I	TTAA	1 cut(s)	69
TseFI	GTSAC	1 cut(s)	250
TseI	GCWGC	1 cut(s)	13
Tsp45I	GTSAC	1 cut(s)	250
TspDTI	ATGAA	1 cut(s)	250
TspGWI	ACGGA	2 cut(s)	328, 366
XmiI	GTMKAC	2 cut(s)	173, 380
XspI	CTAG	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.