RLG00000007019

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0009139
Physical Location & Seq
Reverse (-)
12710326 .. 12712160
1835 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007019

Sequence Viewer

Length: 483 bp
ATGATGAGAAGGGAGCAGCATCAGGACCAGCAATCTAGGGTTTTCTACGAGCTTTCCGCTCTAGCGGCCGGCGGCGGCGGCGGCGGCGGCGGCGGCGCAGATCTCGCCGGCGGGGTTCGCGTCGCTGATGCTGGGGATTTCGATGGCGCTGATGCTGTGTGGATCGGTGACGTTCTTCATCGGGTTCTTGTTGATGCCTTGGGTGCTCGGGTTGGTTATGGTGTTTTATGTGGCTGGAGTCGTCTCCAGTCTCTCTGTTTTGGGGAAGTCGATTCTTTGTTACGCCTCGCCGCCGCCGCCGCCGACGTCACCGCGGAAGGAGATTCCGGCATGGAAGTTATTGTGAAGAAGTGGAGAAGAGGTGTTACAAGAGAAAGAGTTGATATGTTTATTGAAGGGGCGGAGCAGAGCACCAGAAATGCTGCTGCGAGTGGAGTGCTGCATATAGGAGGAACAAATGAATGTATAGGCAATTCAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

161

Amino Acids

16.58

Weight (kDa)

4.99

Isoelectric Point (pI)

43.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 309
AccBSI CCGCTC 1 cut(s) 59
AccII CGCG 2 cut(s) 120, 314
AclWI GGATC 1 cut(s) 170
AcoI YGGCCR 1 cut(s) 66
AcyI GRCGYC 1 cut(s) 306
AgsI TTSAA 1 cut(s) 395
AluBI AGCT 1 cut(s) 52
AluI AGCT 1 cut(s) 52
Alw21I GWGCWC 2 cut(s) 208, 413
Alw26I GTCTC 2 cut(s) 248, 255
AlwI GGATC 1 cut(s) 170
Ama87I CYCGRG 1 cut(s) 207
AoxI GGCC 1 cut(s) 66
ApeKI GCWGC 4 cut(s) 16, 422, 425, 439
AspLEI GCGC 2 cut(s) 98, 149
AspS9I GGNCC 1 cut(s) 25
AsuHPI GGTGA 2 cut(s) 179, 301
AvaI CYCGRG 1 cut(s) 207
AvaII GGWCC 1 cut(s) 25
BarI GAAGNNNNNNTAC 2 cut(s) 349, 381
Bbv12I GWGCWC 2 cut(s) 208, 413
BbvI GCAGC 4 cut(s) 28, 409, 412, 426
BccI CCATC 1 cut(s) 137
BcgI CGANNNNNNTGC 2 cut(s) 418, 452
BcoDI GTCTC 2 cut(s) 248, 255
BfaI CTAG 2 cut(s) 36, 62
BfoI RGCGCY 1 cut(s) 150
BglII AGATCT 1 cut(s) 100
Bme18I GGWCC 1 cut(s) 25
BmeT110I CYCGRG 1 cut(s) 207
BmgT120I GGNCC 1 cut(s) 25
BmsI GCATC 4 cut(s) 28, 118, 142, 184
BpmI CTGGAG 2 cut(s) 230, 256
BsaHI GRCGYC 1 cut(s) 306
BsaJI CCNNGG 2 cut(s) 198, 312
BsaXI ACNNNNNCTCC 2 cut(s) 346, 376
Bse118I RCCGGY 2 cut(s) 68, 107
Bse1I ACTGG 1 cut(s) 247
BseDI CCNNGG 2 cut(s) 198, 312
BseNI ACTGG 1 cut(s) 247
BseX3I CGGCCG 1 cut(s) 66
BseXI GCAGC 4 cut(s) 28, 409, 412, 426
BseYI CCCAGC 1 cut(s) 131
Bsh1236I CGCG 2 cut(s) 120, 314
Bsh1285I CGRYCG 1 cut(s) 69
BshFI GGCC 1 cut(s) 68
BsiEI CGRYCG 1 cut(s) 69
BsiHKAI GWGCWC 2 cut(s) 208, 413
BsiHKCI CYCGRG 1 cut(s) 207
BsiSI CCGG 3 cut(s) 69, 108, 327
BsmAI GTCTC 2 cut(s) 248, 255
BsmBI CGTCTC 1 cut(s) 248
BsnI GGCC 1 cut(s) 68
BsoBI CYCGRG 1 cut(s) 207
Bsp1286I GDGCHC 2 cut(s) 208, 413
Bsp143I GATC 2 cut(s) 100, 162
BspANI GGCC 1 cut(s) 68
BspFNI CGCG 2 cut(s) 120, 314
BspPI GGATC 1 cut(s) 170
BsrBI CCGCTC 1 cut(s) 59
BsrFI RCCGGY 2 cut(s) 68, 107
BsrI ACTGG 1 cut(s) 247
BssAI RCCGGY 2 cut(s) 68, 107
BssECI CCNNGG 2 cut(s) 198, 312
BssMI GATC 2 cut(s) 100, 162
BssNI GRCGYC 1 cut(s) 306
BssT1I CCWWGG 1 cut(s) 198
Bst6I CTCTTC 1 cut(s) 352
BstACI GRCGYC 1 cut(s) 306
BstC8I GCNNGC 2 cut(s) 70, 109
BstDSI CCRYGG 1 cut(s) 312
BstFNI CGCG 2 cut(s) 120, 314
BstH2I RGCGCY 1 cut(s) 150
BstHHI GCGC 2 cut(s) 98, 149
BstKTI GATC 2 cut(s) 103, 165
BstMAI GTCTC 2 cut(s) 248, 255
BstMBI GATC 2 cut(s) 100, 162
BstMCI CGRYCG 1 cut(s) 69
BstUI CGCG 2 cut(s) 120, 314
BstV1I GCAGC 4 cut(s) 28, 409, 412, 426
BstX2I RGATCY 1 cut(s) 100
BstYI RGATCY 1 cut(s) 100
BstZI CGGCCG 1 cut(s) 66
BsuRI GGCC 1 cut(s) 68
BtgI CCRYGG 1 cut(s) 312
Cac8I GCNNGC 2 cut(s) 70, 109
CfoI GCGC 2 cut(s) 98, 149
Cfr10I RCCGGY 2 cut(s) 68, 107
Cfr13I GGNCC 1 cut(s) 25
Cfr42I CCGCGG 1 cut(s) 315
CseI GACGC 1 cut(s) 109
CviAII CATG 1 cut(s) 331
CviJI RGCY 3 cut(s) 52, 68, 234
CviKI_1 RGCY 3 cut(s) 52, 68, 234
DpnI GATC 2 cut(s) 102, 164
DpnII GATC 2 cut(s) 100, 162
EaeI YGGCCR 1 cut(s) 66
EagI CGGCCG 1 cut(s) 66
Eam1104I CTCTTC 1 cut(s) 352
EarI CTCTTC 1 cut(s) 352
EciI GGCGGA 1 cut(s) 416
EclXI CGGCCG 1 cut(s) 66
Eco130I CCWWGG 1 cut(s) 198
Eco47I GGWCC 1 cut(s) 25
Eco52I CGGCCG 1 cut(s) 66
Eco88I CYCGRG 1 cut(s) 207
EcoT14I CCWWGG 1 cut(s) 198
ErhI CCWWGG 1 cut(s) 198
Esp3I CGTCTC 1 cut(s) 248
FaeI CATG 1 cut(s) 334
FaiI YATR 7 cut(s) 219, 229, 332, 386, 444, 446, 467
FatI CATG 1 cut(s) 330
FauI CCCGC 1 cut(s) 104
FspBI CTAG 2 cut(s) 36, 62
GlaI GCGC 2 cut(s) 97, 148
GsaI CCCAGC 1 cut(s) 135
GsuI CTGGAG 2 cut(s) 230, 256
HaeII RGCGCY 1 cut(s) 150
HaeIII GGCC 1 cut(s) 68
HapII CCGG 3 cut(s) 69, 108, 327
HgaI GACGC 1 cut(s) 109
HhaI GCGC 2 cut(s) 98, 149
Hin1I GRCGYC 1 cut(s) 306
Hin1II CATG 1 cut(s) 334
Hin6I GCGC 2 cut(s) 96, 147
HinP1I GCGC 2 cut(s) 96, 147
HinfI GANTC 3 cut(s) 238, 272, 323
HpaII CCGG 3 cut(s) 69, 108, 327
HphI GGTGA 2 cut(s) 179, 301
Hpy188III TCNNGA 2 cut(s) 23, 477
Hpy99I CGWCG 2 cut(s) 125, 308
HpyAV CCTTC 3 cut(s) 3, 311, 389
HpyCH4IV ACGT 2 cut(s) 171, 306
HpyCH4V TGCA 1 cut(s) 442
HpySE526I ACGT 2 cut(s) 171, 306
Hsp92I GRCGYC 1 cut(s) 306
Hsp92II CATG 1 cut(s) 334
HspAI GCGC 2 cut(s) 96, 147
KroI GCCGGC 2 cut(s) 68, 107
KroNI GCCGGC 2 cut(s) 70, 109
KspI CCGCGG 1 cut(s) 315
Kzo9I GATC 2 cut(s) 100, 162
LmnI GCTCC 2 cut(s) 13, 403
Lsp1109I GCAGC 4 cut(s) 28, 409, 412, 426
LweI GCATC 4 cut(s) 28, 118, 142, 184
MaeI CTAG 2 cut(s) 36, 62
MaeII ACGT 2 cut(s) 171, 306
MaeIII GTNAC 4 cut(s) 167, 279, 307, 364
MalI GATC 2 cut(s) 102, 164
MbiI CCGCTC 1 cut(s) 59
MboI GATC 2 cut(s) 100, 162
MboII GAAGA 3 cut(s) 167, 358, 369
MflI RGATCY 1 cut(s) 100
MhlI GDGCHC 2 cut(s) 208, 413
MluCI AATT 1 cut(s) 472
MlyI GAGTC 1 cut(s) 247
MnlI CCTC 3 cut(s) 296, 353, 443
MreI CGCCGGCG 1 cut(s) 107
MroNI GCCGGC 2 cut(s) 68, 107
MspA1I CMGCKG 1 cut(s) 314
MspI CCGG 3 cut(s) 69, 108, 327
MvnI CGCG 2 cut(s) 120, 314
NaeI GCCGGC 2 cut(s) 70, 109
NdeII GATC 2 cut(s) 100, 162
NgoMIV GCCGGC 2 cut(s) 68, 107
NlaIII CATG 1 cut(s) 334
NmuCI GTSAC 2 cut(s) 167, 307
PdiI GCCGGC 2 cut(s) 70, 109
PfeI GAWTC 2 cut(s) 272, 323
PleI GAGTC 1 cut(s) 246
PpsI GAGTC 1 cut(s) 246
PspFI CCCAGC 1 cut(s) 131
PspPI GGNCC 1 cut(s) 25
PsuI RGATCY 1 cut(s) 100
SacII CCGCGG 1 cut(s) 315
Sau3AI GATC 2 cut(s) 100, 162
Sau96I GGNCC 1 cut(s) 25
SchI GAGTC 1 cut(s) 247
SduI GDGCHC 2 cut(s) 208, 413
SetI ASST 4 cut(s) 54, 174, 309, 364
SfaNI GCATC 4 cut(s) 28, 118, 142, 184
Sfr303I CCGCGG 1 cut(s) 315
SgrAI CRCCGGYG 1 cut(s) 107
SgrBI CCGCGG 1 cut(s) 315
SinI GGWCC 1 cut(s) 25
Sse9I AATT 1 cut(s) 472
SspMI CTAG 2 cut(s) 36, 62
StyI CCWWGG 1 cut(s) 198
TaiI ACGT 2 cut(s) 174, 309
TaqI TCGA 2 cut(s) 141, 270
TasI AATT 1 cut(s) 472
TfiI GAWTC 2 cut(s) 272, 323
TseFI GTSAC 2 cut(s) 167, 307
TseI GCWGC 4 cut(s) 16, 422, 425, 439
Tsp45I GTSAC 2 cut(s) 167, 307
TspDTI ATGAA 2 cut(s) 167, 474
VpaK11BI GGWCC 1 cut(s) 25
XspI CTAG 2 cut(s) 36, 62
ZraI GACGTC 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.