Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0009139

Physical Location & Seq

Genomic Coordinates Forward (+)

52188563 .. 52192478

Gene Structure 3916 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG299800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGATGAGAAGGGAGCAGCATCAGGACCAGCAATCTAGGGTTTTCTACGAGCTTTCCGCTCTAGTTCTCAGCCTTCTGCGGTCGCCGCCCACGCCGATTCAATTTTCCGATCAGTCTCCGGCCATTCCGCCGCCGACGAATTCTTCTTCTTCTTCTGTGTCTAGCTCTTCATCCAGGCGGCCGGCGGCGGCGCAGATCTCGCCGGCGGGGTTCGCGTCGCTGATGCTGGGGATTTCGATGGCGCTGATGCTGTGTGGATCGGTGACGTTCTTCATCGGGTTCTTGTTGATGCCTTGGGTGCTCGGGTTGGTTATGGTGTTTTATGTGGCTGGAGTCGTCTCCACTCTCTCTGTTTTGGGGAAGTCGATTCTTTGTTACGCCTCGCCGCCGCCGCCGCCGACGTCACCGCGGAAGGAGATTCCGGATAAATTCACATTCTTCGACAGCTGCTACTATTATGCCAAACTTCCAACCTTCATCCACCAAATAATATGTCTCTTCCATGCAAAATCTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

172

Amino Acids

18.85

Weight (kDa)

9.0

Isoelectric Point (pI)

80.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27290 AT1G27290
fragaria_vesca	FvH4_4g23540 FvH4_4g23540 FvH4_4g23540
malus_domestica	MD13G1121400.v1.1 MD16G1121700.v1.1
prunus_persica	Prupe.1G223700_v2.0.a1 Prupe.1G223700_v2.0.a1 Prupe.1G223700_v2.0.a1 Prupe.1G223700_v2.0.a1
pyrus_communis	pycom13g10580 pycom16g10410
rosa_chinensis	RchiOBHm_Chr4g0429941
rosa_laevigata	RLG00000007019
rosa_roxburghii	Rroxscaffold_5G00371770
rosa_rugosa	Rorug04G0239200 Rorug04G0239300 Rorug04G0239400
rosa_samantha	Rh4AG295900 Rh4DG299800
rosa_wichuraiana	Rw4G025630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	404
AccBSI	CCGCTC	1 cut(s)	59
AccII	CGCG	2 cut(s)	215, 409
AccIII	TCCGGA	1 cut(s)	421
AclWI	GGATC	1 cut(s)	265
AcoI	YGGCCR	2 cut(s)	120, 179
AcsI	RAATTY	2 cut(s)	139, 428
AcyI	GRCGYC	1 cut(s)	401
AgsI	TTSAA	1 cut(s)	101
AjnI	CCWGG	1 cut(s)	173
AluBI	AGCT	3 cut(s)	52, 165, 447
AluI	AGCT	3 cut(s)	52, 165, 447
Alw21I	GWGCWC	1 cut(s)	303
Alw26I	GTCTC	3 cut(s)	120, 343, 500
AlwI	GGATC	1 cut(s)	265
Ama87I	CYCGRG	1 cut(s)	302
Aor13HI	TCCGGA	1 cut(s)	421
AoxI	GGCC	2 cut(s)	120, 179
ApeKI	GCWGC	2 cut(s)	16, 447
ApoI	RAATTY	2 cut(s)	139, 428
ArsI	GACNNNNNNTTYG	2 cut(s)	478, 510
AspLEI	GCGC	2 cut(s)	193, 244
AspS9I	GGNCC	1 cut(s)	25
AsuHPI	GGTGA	2 cut(s)	274, 396
AvaI	CYCGRG	1 cut(s)	302
AvaII	GGWCC	1 cut(s)	25
Bbv12I	GWGCWC	1 cut(s)	303
BbvI	GCAGC	2 cut(s)	28, 434
BccI	CCATC	1 cut(s)	232
BciT130I	CCWGG	1 cut(s)	175
BcoDI	GTCTC	3 cut(s)	120, 343, 500
BfaI	CTAG	3 cut(s)	36, 62, 162
BfoI	RGCGCY	1 cut(s)	245
BglII	AGATCT	1 cut(s)	195
Bme1390I	CCNGG	1 cut(s)	175
Bme18I	GGWCC	1 cut(s)	25
BmeT110I	CYCGRG	1 cut(s)	302
BmgT120I	GGNCC	1 cut(s)	25
BmrFI	CCNGG	1 cut(s)	175
BmsI	GCATC	4 cut(s)	28, 213, 237, 279
BpmI	CTGGAG	1 cut(s)	351
BsaHI	GRCGYC	1 cut(s)	401
BsaJI	CCNNGG	2 cut(s)	293, 407
BsaWI	WCCGGW	1 cut(s)	421
Bse118I	RCCGGY	2 cut(s)	181, 202
BseAI	TCCGGA	1 cut(s)	421
BseBI	CCWGG	1 cut(s)	175
BseDI	CCNNGG	2 cut(s)	293, 407
BseGI	GGATG	2 cut(s)	170, 477
BseMII	CTCAG	1 cut(s)	82
BseX3I	CGGCCG	1 cut(s)	179
BseXI	GCAGC	2 cut(s)	28, 434
BseYI	CCCAGC	1 cut(s)	226
Bsh1236I	CGCG	2 cut(s)	215, 409
Bsh1285I	CGRYCG	2 cut(s)	83, 182
BshFI	GGCC	2 cut(s)	122, 181
BsiEI	CGRYCG	2 cut(s)	83, 182
BsiHKAI	GWGCWC	1 cut(s)	303
BsiHKCI	CYCGRG	1 cut(s)	302
BsiSI	CCGG	4 cut(s)	119, 182, 203, 422
BsmAI	GTCTC	3 cut(s)	120, 343, 500
BsmBI	CGTCTC	1 cut(s)	343
BsnI	GGCC	2 cut(s)	122, 181
BsoBI	CYCGRG	1 cut(s)	302
Bsp1286I	GDGCHC	1 cut(s)	303
Bsp13I	TCCGGA	1 cut(s)	421
Bsp143I	GATC	3 cut(s)	109, 195, 257
BspANI	GGCC	2 cut(s)	122, 181
BspCNI	CTCAG	1 cut(s)	81
BspEI	TCCGGA	1 cut(s)	421
BspFNI	CGCG	2 cut(s)	215, 409
BspPI	GGATC	1 cut(s)	265
BspQI	GCTCTTC	1 cut(s)	172
BsrBI	CCGCTC	1 cut(s)	59
BsrFI	RCCGGY	2 cut(s)	181, 202
BssAI	RCCGGY	2 cut(s)	181, 202
BssECI	CCNNGG	2 cut(s)	293, 407
BssMI	GATC	3 cut(s)	109, 195, 257
BssNI	GRCGYC	1 cut(s)	401
BssT1I	CCWWGG	1 cut(s)	293
Bst2UI	CCWGG	1 cut(s)	175
Bst6I	CTCTTC	2 cut(s)	172, 503
BstACI	GRCGYC	1 cut(s)	401
BstC8I	GCNNGC	2 cut(s)	183, 204
BstDEI	CTNAG	1 cut(s)	68
BstDSI	CCRYGG	1 cut(s)	407
BstF5I	GGATG	2 cut(s)	170, 477
BstFNI	CGCG	2 cut(s)	215, 409
BstH2I	RGCGCY	1 cut(s)	245
BstHHI	GCGC	2 cut(s)	193, 244
BstKTI	GATC	3 cut(s)	112, 198, 260
BstMAI	GTCTC	3 cut(s)	120, 343, 500
BstMBI	GATC	3 cut(s)	109, 195, 257
BstMCI	CGRYCG	2 cut(s)	83, 182
BstMWI	GCNNNNNNNGC	7 cut(s)	85, 91, 199, 212, 298, 391, 394
BstNI	CCWGG	1 cut(s)	175
BstSCI	CCNGG	1 cut(s)	173
BstUI	CGCG	2 cut(s)	215, 409
BstV1I	GCAGC	2 cut(s)	28, 434
BstX2I	RGATCY	1 cut(s)	195
BstYI	RGATCY	1 cut(s)	195
BstZI	CGGCCG	1 cut(s)	179
BsuRI	GGCC	2 cut(s)	122, 181
BtgI	CCRYGG	1 cut(s)	407
BtsCI	GGATG	2 cut(s)	170, 477
Cac8I	GCNNGC	2 cut(s)	183, 204
CfoI	GCGC	2 cut(s)	193, 244
Cfr10I	RCCGGY	2 cut(s)	181, 202
Cfr13I	GGNCC	1 cut(s)	25
Cfr42I	CCGCGG	1 cut(s)	410
CseI	GACGC	1 cut(s)	204
CviAII	CATG	1 cut(s)	503
CviJI	RGCY	7 cut(s)	52, 72, 122, 165, 181, 329, 447
CviKI_1	RGCY	7 cut(s)	52, 72, 122, 165, 181, 329, 447
DdeI	CTNAG	1 cut(s)	68
DpnI	GATC	3 cut(s)	111, 197, 259
DpnII	GATC	3 cut(s)	109, 195, 257
EaeI	YGGCCR	2 cut(s)	120, 179
EagI	CGGCCG	1 cut(s)	179
Eam1104I	CTCTTC	2 cut(s)	172, 503
EarI	CTCTTC	2 cut(s)	172, 503
EciI	GGCGGA	1 cut(s)	117
EclXI	CGGCCG	1 cut(s)	179
Eco130I	CCWWGG	1 cut(s)	293
Eco47I	GGWCC	1 cut(s)	25
Eco52I	CGGCCG	1 cut(s)	179
Eco88I	CYCGRG	1 cut(s)	302
EcoRI	GAATTC	1 cut(s)	139
EcoRII	CCWGG	1 cut(s)	173
EcoT14I	CCWWGG	1 cut(s)	293
ErhI	CCWWGG	1 cut(s)	293
Esp3I	CGTCTC	1 cut(s)	343
FaeI	CATG	1 cut(s)	506
FaiI	YATR	5 cut(s)	314, 324, 459, 493, 504
FatI	CATG	1 cut(s)	502
FauI	CCCGC	1 cut(s)	199
FokI	GGATG	2 cut(s)	157, 464
FspBI	CTAG	3 cut(s)	36, 62, 162
GlaI	GCGC	2 cut(s)	192, 243
GsaI	CCCAGC	1 cut(s)	230
GsuI	CTGGAG	1 cut(s)	351
HaeII	RGCGCY	1 cut(s)	245
HaeIII	GGCC	2 cut(s)	122, 181
HapII	CCGG	4 cut(s)	119, 182, 203, 422
HgaI	GACGC	1 cut(s)	204
HhaI	GCGC	2 cut(s)	193, 244
Hin1I	GRCGYC	1 cut(s)	401
Hin1II	CATG	1 cut(s)	506
Hin6I	GCGC	2 cut(s)	191, 242
HinP1I	GCGC	2 cut(s)	191, 242
HinfI	GANTC	4 cut(s)	97, 333, 367, 418
HpaII	CCGG	4 cut(s)	119, 182, 203, 422
HphI	GGTGA	2 cut(s)	274, 396
Hpy188I	TCNGA	2 cut(s)	109, 514
Hpy188III	TCNNGA	2 cut(s)	23, 422
Hpy99I	CGWCG	3 cut(s)	139, 220, 403
HpyAV	CCTTC	4 cut(s)	3, 83, 406, 484
HpyCH4IV	ACGT	2 cut(s)	266, 401
HpyCH4V	TGCA	1 cut(s)	506
HpyF10VI	GCNNNNNNNGC	7 cut(s)	85, 91, 199, 212, 298, 391, 394
HpyF3I	CTNAG	1 cut(s)	68
HpySE526I	ACGT	2 cut(s)	266, 401
Hsp92I	GRCGYC	1 cut(s)	401
Hsp92II	CATG	1 cut(s)	506
HspAI	GCGC	2 cut(s)	191, 242
Kpn2I	TCCGGA	1 cut(s)	421
KroI	GCCGGC	2 cut(s)	181, 202
KroNI	GCCGGC	2 cut(s)	183, 204
KspI	CCGCGG	1 cut(s)	410
Kzo9I	GATC	3 cut(s)	109, 195, 257
LguI	GCTCTTC	1 cut(s)	172
LmnI	GCTCC	1 cut(s)	13
Lsp1109I	GCAGC	2 cut(s)	28, 434
LweI	GCATC	4 cut(s)	28, 213, 237, 279
MaeI	CTAG	3 cut(s)	36, 62, 162
MaeII	ACGT	2 cut(s)	266, 401
MaeIII	GTNAC	3 cut(s)	262, 374, 402
MalI	GATC	3 cut(s)	111, 197, 259
MbiI	CCGCTC	1 cut(s)	59
MboI	GATC	3 cut(s)	109, 195, 257
MboII	GAAGA	8 cut(s)	135, 138, 141, 144, 159, 262, 430, 490
MflI	RGATCY	1 cut(s)	195
MhlI	GDGCHC	1 cut(s)	303
MluCI	AATT	3 cut(s)	101, 139, 428
MlyI	GAGTC	1 cut(s)	342
MmeI	TCCRAC	1 cut(s)	494
MnlI	CCTC	1 cut(s)	391
MreI	CGCCGGCG	1 cut(s)	202
MroI	TCCGGA	1 cut(s)	421
MroNI	GCCGGC	2 cut(s)	181, 202
MspA1I	CMGCKG	2 cut(s)	409, 447
MspI	CCGG	4 cut(s)	119, 182, 203, 422
MspR9I	CCNGG	1 cut(s)	175
MvaI	CCWGG	1 cut(s)	175
MvnI	CGCG	2 cut(s)	215, 409
MwoI	GCNNNNNNNGC	7 cut(s)	85, 91, 199, 212, 298, 391, 394
NaeI	GCCGGC	2 cut(s)	183, 204
NdeII	GATC	3 cut(s)	109, 195, 257
NgoMIV	GCCGGC	2 cut(s)	181, 202
NlaIII	CATG	1 cut(s)	506
NmuCI	GTSAC	2 cut(s)	262, 402
PciSI	GCTCTTC	1 cut(s)	172
PdiI	GCCGGC	2 cut(s)	183, 204
PfeI	GAWTC	3 cut(s)	97, 367, 418
PleI	GAGTC	1 cut(s)	341
PpsI	GAGTC	1 cut(s)	341
Psp6I	CCWGG	1 cut(s)	173
PspFI	CCCAGC	1 cut(s)	226
PspGI	CCWGG	1 cut(s)	173
PspPI	GGNCC	1 cut(s)	25
PsuI	RGATCY	1 cut(s)	195
PvuII	CAGCTG	1 cut(s)	447
SacII	CCGCGG	1 cut(s)	410
SapI	GCTCTTC	1 cut(s)	172
Sau3AI	GATC	3 cut(s)	109, 195, 257
Sau96I	GGNCC	1 cut(s)	25
SchI	GAGTC	1 cut(s)	342
ScrFI	CCNGG	1 cut(s)	175
SduI	GDGCHC	1 cut(s)	303
SetI	ASST	6 cut(s)	54, 167, 269, 404, 449, 476
SfaNI	GCATC	4 cut(s)	28, 213, 237, 279
Sfr303I	CCGCGG	1 cut(s)	410
SgrAI	CRCCGGYG	1 cut(s)	202
SgrBI	CCGCGG	1 cut(s)	410
SinI	GGWCC	1 cut(s)	25
Sse9I	AATT	3 cut(s)	101, 139, 428
SspMI	CTAG	3 cut(s)	36, 62, 162
StyD4I	CCNGG	1 cut(s)	173
StyI	CCWWGG	1 cut(s)	293
TaiI	ACGT	2 cut(s)	269, 404
TaqI	TCGA	3 cut(s)	236, 365, 441
TasI	AATT	3 cut(s)	101, 139, 428
TauI	GCSGC	9 cut(s)	88, 133, 181, 188, 191, 388, 391, 394, 397
TfiI	GAWTC	3 cut(s)	97, 367, 418
TseFI	GTSAC	2 cut(s)	262, 402
TseI	GCWGC	2 cut(s)	16, 447
Tsp45I	GTSAC	2 cut(s)	262, 402
TspDTI	ATGAA	3 cut(s)	159, 262, 466
VpaK11BI	GGWCC	1 cut(s)	25
XapI	RAATTY	2 cut(s)	139, 428
XspI	CTAG	3 cut(s)	36, 62, 162
ZraI	GACGTC	1 cut(s)	402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.