pycom13g10580

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0009139
Physical Location & Seq
Reverse (-)
7075434 .. 7077034
1601 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g10580.2

Sequence Viewer

Length: 414 bp
ATGATGCGGAGGCAGCAGGAACAAGACCAGCAGTCTAGGGTTTTCTACGAGCTATCGGCTCTGGTTCTCAACCTCCTCCGATCTCCTTCCACACCGATTCAATTCTCCGATAACTCCACGGTGATGCCGCCGTCTTCGTCTTCGTTGAGGCGGCCGCCGGCGGCGTCGACGGCGCAGATCTCTCCGGCTGGGTTCGCGTCGTTGATGCTGGGGATTTCGATGGCTCTGATGCTGTGCGGATCGGTGACTTTCTTCATTGGGTTCTTATTGATGCCGTGGGTGCTGGGATTGTTGATGGTGTTGTATGTGGCGGGGATCCTATCGAGCCTCTCCTTCTTGGGGAAGTCGATTCTTTGCTACGCCTCTGCTCCGTCGACGCCGCGGAAGGACATTCCTGCATGGAAGCTATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

14.93

Weight (kDa)

9.78

Isoelectric Point (pI)

72.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 167, 374
AccII CGCG 2 cut(s) 197, 382
AciI CCGC 9 cut(s) 7, 128, 151, 155, 161, 237, 311, 380, 382
AclWI GGATC 3 cut(s) 247, 310, 323
AcoI YGGCCR 1 cut(s) 152
AcyI GRCGYC 2 cut(s) 164, 377
AfiI CCNNNNNNNGG 1 cut(s) 339
AgsI TTSAA 1 cut(s) 101
AhdI GACNNNNNGTC 1 cut(s) 31
AluBI AGCT 2 cut(s) 52, 406
AluI AGCT 2 cut(s) 52, 406
AlwI GGATC 3 cut(s) 247, 310, 323
AoxI GGCC 1 cut(s) 152
ApeKI GCWGC 1 cut(s) 13
AspLEI GCGC 1 cut(s) 175
AsuHPI GGTGA 2 cut(s) 133, 256
BamHI GGATCC 1 cut(s) 315
BbsI GAAGAC 2 cut(s) 126, 132
BbvI GCAGC 1 cut(s) 25
BccI CCATC 2 cut(s) 214, 289
BceAI ACGGC 3 cut(s) 115, 186, 259
BfaI CTAG 1 cut(s) 36
BglII AGATCT 1 cut(s) 177
BisI GCNGC 6 cut(s) 14, 128, 152, 155, 162, 380
BlsI GCNGC 6 cut(s) 15, 129, 153, 156, 163, 381
BmeRI GACNNNNNGTC 1 cut(s) 31
BmiI GGNNCC 1 cut(s) 317
BmsI GCATC 4 cut(s) 114, 195, 219, 261
BpiI GAAGAC 2 cut(s) 126, 132
BsaHI GRCGYC 2 cut(s) 164, 377
BsaJI CCNNGG 3 cut(s) 117, 275, 380
Bsc4I CCNNNNNNNGG 1 cut(s) 339
Bse118I RCCGGY 1 cut(s) 157
BseDI CCNNGG 3 cut(s) 117, 275, 380
BseLI CCNNNNNNNGG 1 cut(s) 339
BseRI GAGGAG 1 cut(s) 65
BseX3I CGGCCG 1 cut(s) 152
BseXI GCAGC 1 cut(s) 25
BseYI CCCAGC 3 cut(s) 188, 208, 283
Bsh1236I CGCG 2 cut(s) 197, 382
Bsh1285I CGRYCG 1 cut(s) 155
BshFI GGCC 1 cut(s) 154
BsiEI CGRYCG 1 cut(s) 155
BsiSI CCGG 2 cut(s) 158, 185
BslI CCNNNNNNNGG 1 cut(s) 339
BsnI GGCC 1 cut(s) 154
Bsp143I GATC 4 cut(s) 80, 177, 239, 315
BspACI CCGC 9 cut(s) 7, 128, 151, 155, 161, 237, 311, 380, 382
BspANI GGCC 1 cut(s) 154
BspFNI CGCG 2 cut(s) 197, 382
BspLI GGNNCC 1 cut(s) 317
BspPI GGATC 3 cut(s) 247, 310, 323
BsrFI RCCGGY 1 cut(s) 157
BssAI RCCGGY 1 cut(s) 157
BssECI CCNNGG 3 cut(s) 117, 275, 380
BssMI GATC 4 cut(s) 80, 177, 239, 315
BssNI GRCGYC 2 cut(s) 164, 377
Bst4CI ACNGT 1 cut(s) 121
BstACI GRCGYC 2 cut(s) 164, 377
BstC8I GCNNGC 1 cut(s) 159
BstDSI CCRYGG 3 cut(s) 117, 275, 380
BstFNI CGCG 2 cut(s) 197, 382
BstHHI GCGC 1 cut(s) 175
BstKTI GATC 4 cut(s) 83, 180, 242, 318
BstMBI GATC 4 cut(s) 80, 177, 239, 315
BstMCI CGRYCG 1 cut(s) 155
BstMWI GCNNNNNNNGC 4 cut(s) 13, 170, 194, 280
BstUI CGCG 2 cut(s) 197, 382
BstV1I GCAGC 1 cut(s) 25
BstV2I GAAGAC 2 cut(s) 126, 132
BstX2I RGATCY 2 cut(s) 177, 315
BstYI RGATCY 2 cut(s) 177, 315
BstZI CGGCCG 1 cut(s) 152
BsuRI GGCC 1 cut(s) 154
BtgI CCRYGG 3 cut(s) 117, 275, 380
Cac8I GCNNGC 1 cut(s) 159
CciNI GCGGCCGC 1 cut(s) 152
CfoI GCGC 1 cut(s) 175
Cfr10I RCCGGY 1 cut(s) 157
Cfr42I CCGCGG 1 cut(s) 383
CseI GACGC 3 cut(s) 153, 186, 385
CviAII CATG 1 cut(s) 399
CviJI RGCY 7 cut(s) 52, 59, 154, 188, 224, 327, 406
CviKI_1 RGCY 7 cut(s) 52, 59, 154, 188, 224, 327, 406
DpnI GATC 4 cut(s) 82, 179, 241, 317
DpnII GATC 4 cut(s) 80, 177, 239, 315
DriI GACNNNNNGTC 1 cut(s) 31
EaeI YGGCCR 1 cut(s) 152
EagI CGGCCG 1 cut(s) 152
Eam1105I GACNNNNNGTC 1 cut(s) 31
EclXI CGGCCG 1 cut(s) 152
Eco52I CGGCCG 1 cut(s) 152
FaeI CATG 1 cut(s) 402
FaiI YATR 2 cut(s) 306, 400
FatI CATG 1 cut(s) 398
FauI CCCGC 1 cut(s) 304
FblI GTMKAC 2 cut(s) 167, 374
Fnu4HI GCNGC 6 cut(s) 14, 128, 152, 155, 162, 380
Fsp4HI GCNGC 6 cut(s) 14, 128, 152, 155, 162, 380
FspBI CTAG 1 cut(s) 36
GlaI GCGC 1 cut(s) 174
GluI GCNGC 6 cut(s) 14, 128, 152, 155, 162, 380
GsaI CCCAGC 3 cut(s) 192, 212, 287
HaeIII GGCC 1 cut(s) 154
HapII CCGG 2 cut(s) 158, 185
HgaI GACGC 3 cut(s) 153, 186, 385
HhaI GCGC 1 cut(s) 175
Hin1I GRCGYC 2 cut(s) 164, 377
Hin1II CATG 1 cut(s) 402
Hin6I GCGC 1 cut(s) 173
HinP1I GCGC 1 cut(s) 173
HincII GTYRAC 2 cut(s) 168, 375
HindII GTYRAC 2 cut(s) 168, 375
HinfI GANTC 2 cut(s) 97, 349
HpaII CCGG 2 cut(s) 158, 185
HphI GGTGA 2 cut(s) 133, 256
Hpy166II GTNNAC 2 cut(s) 168, 375
Hpy188I TCNGA 3 cut(s) 80, 109, 228
Hpy8I GTNNAC 2 cut(s) 168, 375
Hpy99I CGWCG 5 cut(s) 169, 172, 202, 376, 379
HpyAV CCTTC 3 cut(s) 96, 343, 379
HpyCH4III ACNGT 1 cut(s) 121
HpyCH4V TGCA 1 cut(s) 398
HpyF10VI GCNNNNNNNGC 4 cut(s) 13, 170, 194, 280
Hsp92I GRCGYC 2 cut(s) 164, 377
Hsp92II CATG 1 cut(s) 402
HspAI GCGC 1 cut(s) 173
KroI GCCGGC 1 cut(s) 157
KroNI GCCGGC 1 cut(s) 159
KspI CCGCGG 1 cut(s) 383
Kzo9I GATC 4 cut(s) 80, 177, 239, 315
LmnI GCTCC 1 cut(s) 373
LpnPI CCDG 9 cut(s) 2, 41, 47, 171, 174, 194, 198, 269, 408
Lsp1109I GCAGC 1 cut(s) 25
LweI GCATC 4 cut(s) 114, 195, 219, 261
MaeI CTAG 1 cut(s) 36
MaeIII GTNAC 1 cut(s) 244
MalI GATC 4 cut(s) 82, 179, 241, 317
MboI GATC 4 cut(s) 80, 177, 239, 315
MboII GAAGA 3 cut(s) 126, 132, 244
MflI RGATCY 2 cut(s) 177, 315
MluCI AATT 1 cut(s) 101
MnlI CCTC 6 cut(s) 3, 83, 86, 141, 338, 373
MreI CGCCGGCG 1 cut(s) 157
MroNI GCCGGC 1 cut(s) 157
MslI CAYNNNNRTG 1 cut(s) 122
MspA1I CMGCKG 1 cut(s) 382
MspI CCGG 2 cut(s) 158, 185
MvnI CGCG 2 cut(s) 197, 382
MwoI GCNNNNNNNGC 4 cut(s) 13, 170, 194, 280
NaeI GCCGGC 1 cut(s) 159
NdeII GATC 4 cut(s) 80, 177, 239, 315
NgoMIV GCCGGC 1 cut(s) 157
NlaIII CATG 1 cut(s) 402
NlaIV GGNNCC 1 cut(s) 317
NmuCI GTSAC 1 cut(s) 244
NotI GCGGCCGC 1 cut(s) 152
PdiI GCCGGC 1 cut(s) 159
PfeI GAWTC 2 cut(s) 97, 349
PkrI GCNGC 6 cut(s) 15, 129, 153, 156, 163, 381
PspFI CCCAGC 3 cut(s) 188, 208, 283
PspN4I GGNNCC 1 cut(s) 317
PsuI RGATCY 2 cut(s) 177, 315
RseI CAYNNNNRTG 1 cut(s) 122
SacII CCGCGG 1 cut(s) 383
SalI GTCGAC 2 cut(s) 166, 373
SatI GCNGC 6 cut(s) 14, 128, 152, 155, 162, 380
Sau3AI GATC 4 cut(s) 80, 177, 239, 315
SetI ASST 3 cut(s) 54, 75, 408
SfaNI GCATC 4 cut(s) 114, 195, 219, 261
Sfr303I CCGCGG 1 cut(s) 383
SgrAI CRCCGGYG 1 cut(s) 157
SgrBI CCGCGG 1 cut(s) 383
SgrDI CGTCGACG 2 cut(s) 166, 373
SmiMI CAYNNNNRTG 1 cut(s) 122
Sse9I AATT 1 cut(s) 101
SsiI CCGC 9 cut(s) 7, 128, 151, 155, 161, 237, 311, 380, 382
SspMI CTAG 1 cut(s) 36
TaaI ACNGT 1 cut(s) 121
TaqI TCGA 5 cut(s) 167, 218, 323, 347, 374
TasI AATT 1 cut(s) 101
TauI GCSGC 5 cut(s) 130, 154, 157, 164, 382
TfiI GAWTC 2 cut(s) 97, 349
TseFI GTSAC 1 cut(s) 244
TseI GCWGC 1 cut(s) 13
Tsp45I GTSAC 1 cut(s) 244
TspDTI ATGAA 1 cut(s) 244
TspGWI ACGGA 1 cut(s) 360
XmiI GTMKAC 2 cut(s) 167, 374
XspI CTAG 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.