Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0009139

Physical Location & Seq

Genomic Coordinates Reverse (-)

8742855 .. 8745102

Gene Structure 2248 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1121700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGATGCAGAGGCAGCAGCAACAAGACCAGCAATCCAGGGTTTTGTACGAGCTGTCGGCTCTGGTTCTCAACCTCCTCCGATCTCCTCCCACGCCGATTCAATTCTCCGATAACTCCACGGTGATGATGCCCCCGACTACGTCTGCGTCGTCGTTGAGGCGGCCGCCGGCGGCGTCGACGGCGCAGATCTCGCCGGTGGGATTCGCGTCGTTGATGCTGGGGATTTCGATGGCTCTGATGCTGTGCGGAACGGTGACTTTCTTCATTGGGTTCATATTGATGCCGTGGGTGCTGGGATTGGTGATGGTGTTGTACGTGGCGGGGATCCTGTCGAGCCTCTCCGTCTTGGGGAAGTCGATTCTTTGCTACGCCTCCGCCCCGTCGACGCCGCGGAAGGACATTCCTGCATGGAAGCTATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

141

Amino Acids

15.18

Weight (kDa)

9.78

Isoelectric Point (pI)

60.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27290 AT1G27290
fragaria_vesca	FvH4_4g23540 FvH4_4g23540 FvH4_4g23540
malus_domestica	MD13G1121400.v1.1 MD16G1121700.v1.1
prunus_persica	Prupe.1G223700_v2.0.a1 Prupe.1G223700_v2.0.a1 Prupe.1G223700_v2.0.a1 Prupe.1G223700_v2.0.a1
pyrus_communis	pycom13g10580 pycom16g10410
rosa_chinensis	RchiOBHm_Chr4g0429941
rosa_laevigata	RLG00000007019
rosa_roxburghii	Rroxscaffold_5G00371770
rosa_rugosa	Rorug04G0239200 Rorug04G0239300 Rorug04G0239400
rosa_samantha	Rh4AG295900 Rh4DG299800
rosa_wichuraiana	Rw4G025630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	176, 383
AccII	CGCG	2 cut(s)	206, 391
AciI	CCGC	8 cut(s)	160, 164, 170, 246, 320, 375, 389, 391
AclWI	GGATC	2 cut(s)	319, 332
AcoI	YGGCCR	1 cut(s)	161
AcyI	GRCGYC	2 cut(s)	173, 386
AfaI	GTAC	2 cut(s)	47, 314
AfiI	CCNNNNNNNGG	1 cut(s)	348
AgsI	TTSAA	1 cut(s)	101
AjnI	CCWGG	1 cut(s)	35
AluBI	AGCT	2 cut(s)	52, 415
AluI	AGCT	2 cut(s)	52, 415
AlwI	GGATC	2 cut(s)	319, 332
AoxI	GGCC	1 cut(s)	161
ApeKI	GCWGC	2 cut(s)	13, 16
AspLEI	GCGC	1 cut(s)	184
AsuHPI	GGTGA	3 cut(s)	133, 265, 313
BamHI	GGATCC	1 cut(s)	324
BbvI	GCAGC	2 cut(s)	25, 28
BccI	CCATC	2 cut(s)	223, 298
BceAI	ACGGC	2 cut(s)	195, 268
BciT130I	CCWGG	1 cut(s)	37
BglII	AGATCT	1 cut(s)	186
BisI	GCNGC	6 cut(s)	14, 17, 161, 164, 171, 389
BlsI	GCNGC	6 cut(s)	15, 18, 162, 165, 172, 390
Bme1390I	CCNGG	1 cut(s)	37
BmiI	GGNNCC	1 cut(s)	326
BmrFI	CCNGG	1 cut(s)	37
BmsI	GCATC	4 cut(s)	117, 204, 228, 270
BsaAI	YACGTR	1 cut(s)	316
BsaHI	GRCGYC	2 cut(s)	173, 386
BsaJI	CCNNGG	4 cut(s)	36, 117, 284, 389
Bsc4I	CCNNNNNNNGG	1 cut(s)	348
Bse118I	RCCGGY	2 cut(s)	166, 193
BseBI	CCWGG	1 cut(s)	37
BseDI	CCNNGG	4 cut(s)	36, 117, 284, 389
BseLI	CCNNNNNNNGG	1 cut(s)	348
BseRI	GAGGAG	2 cut(s)	65, 75
BseX3I	CGGCCG	1 cut(s)	161
BseXI	GCAGC	2 cut(s)	25, 28
BseYI	CCCAGC	2 cut(s)	217, 292
Bsh1236I	CGCG	2 cut(s)	206, 391
Bsh1285I	CGRYCG	1 cut(s)	164
BshFI	GGCC	1 cut(s)	163
BsiEI	CGRYCG	1 cut(s)	164
BsiSI	CCGG	2 cut(s)	167, 194
BslI	CCNNNNNNNGG	1 cut(s)	348
BsnI	GGCC	1 cut(s)	163
Bsp143I	GATC	3 cut(s)	80, 186, 324
BspACI	CCGC	8 cut(s)	160, 164, 170, 246, 320, 375, 389, 391
BspANI	GGCC	1 cut(s)	163
BspFNI	CGCG	2 cut(s)	206, 391
BspLI	GGNNCC	1 cut(s)	326
BspPI	GGATC	2 cut(s)	319, 332
BsrFI	RCCGGY	2 cut(s)	166, 193
BssAI	RCCGGY	2 cut(s)	166, 193
BssECI	CCNNGG	4 cut(s)	36, 117, 284, 389
BssMI	GATC	3 cut(s)	80, 186, 324
BssNI	GRCGYC	2 cut(s)	173, 386
Bst2UI	CCWGG	1 cut(s)	37
Bst4CI	ACNGT	2 cut(s)	121, 253
BstACI	GRCGYC	2 cut(s)	173, 386
BstBAI	YACGTR	1 cut(s)	316
BstC8I	GCNNGC	1 cut(s)	168
BstDSI	CCRYGG	3 cut(s)	117, 284, 389
BstFNI	CGCG	2 cut(s)	206, 391
BstHHI	GCGC	1 cut(s)	184
BstKTI	GATC	3 cut(s)	83, 189, 327
BstMBI	GATC	3 cut(s)	80, 186, 324
BstMCI	CGRYCG	1 cut(s)	164
BstMWI	GCNNNNNNNGC	4 cut(s)	13, 179, 190, 289
BstNI	CCWGG	1 cut(s)	37
BstSCI	CCNGG	1 cut(s)	35
BstUI	CGCG	2 cut(s)	206, 391
BstV1I	GCAGC	2 cut(s)	25, 28
BstX2I	RGATCY	2 cut(s)	186, 324
BstYI	RGATCY	2 cut(s)	186, 324
BstZI	CGGCCG	1 cut(s)	161
BsuRI	GGCC	1 cut(s)	163
BtgI	CCRYGG	3 cut(s)	117, 284, 389
Cac8I	GCNNGC	1 cut(s)	168
CciNI	GCGGCCGC	1 cut(s)	161
CfoI	GCGC	1 cut(s)	184
Cfr10I	RCCGGY	2 cut(s)	166, 193
Cfr42I	CCGCGG	1 cut(s)	392
CseI	GACGC	4 cut(s)	135, 162, 195, 394
Csp6I	GTAC	2 cut(s)	46, 313
CviAII	CATG	1 cut(s)	408
CviJI	RGCY	6 cut(s)	52, 59, 163, 233, 336, 415
CviKI_1	RGCY	6 cut(s)	52, 59, 163, 233, 336, 415
CviQI	GTAC	2 cut(s)	46, 313
DpnI	GATC	3 cut(s)	82, 188, 326
DpnII	GATC	3 cut(s)	80, 186, 324
EaeI	YGGCCR	1 cut(s)	161
EagI	CGGCCG	1 cut(s)	161
EciI	GGCGGA	1 cut(s)	364
EclXI	CGGCCG	1 cut(s)	161
Eco52I	CGGCCG	1 cut(s)	161
EcoRII	CCWGG	1 cut(s)	35
FaeI	CATG	1 cut(s)	411
FaiI	YATR	2 cut(s)	275, 409
FatI	CATG	1 cut(s)	407
FauI	CCCGC	1 cut(s)	313
FblI	GTMKAC	2 cut(s)	176, 383
Fnu4HI	GCNGC	6 cut(s)	14, 17, 161, 164, 171, 389
Fsp4HI	GCNGC	6 cut(s)	14, 17, 161, 164, 171, 389
GlaI	GCGC	1 cut(s)	183
GluI	GCNGC	6 cut(s)	14, 17, 161, 164, 171, 389
GsaI	CCCAGC	2 cut(s)	221, 296
HaeIII	GGCC	1 cut(s)	163
HapII	CCGG	2 cut(s)	167, 194
HgaI	GACGC	4 cut(s)	135, 162, 195, 394
HhaI	GCGC	1 cut(s)	184
Hin1I	GRCGYC	2 cut(s)	173, 386
Hin1II	CATG	1 cut(s)	411
Hin6I	GCGC	1 cut(s)	182
HinP1I	GCGC	1 cut(s)	182
HincII	GTYRAC	2 cut(s)	177, 384
HindII	GTYRAC	2 cut(s)	177, 384
HinfI	GANTC	3 cut(s)	97, 201, 358
HpaII	CCGG	2 cut(s)	167, 194
HphI	GGTGA	3 cut(s)	133, 265, 313
Hpy166II	GTNNAC	2 cut(s)	177, 384
Hpy188I	TCNGA	3 cut(s)	80, 109, 237
Hpy8I	GTNNAC	2 cut(s)	177, 384
Hpy99I	CGWCG	7 cut(s)	151, 154, 178, 181, 211, 385, 388
HpyAV	CCTTC	1 cut(s)	388
HpyCH4III	ACNGT	2 cut(s)	121, 253
HpyCH4IV	ACGT	2 cut(s)	140, 315
HpyCH4V	TGCA	2 cut(s)	7, 407
HpyF10VI	GCNNNNNNNGC	4 cut(s)	13, 179, 190, 289
HpySE526I	ACGT	2 cut(s)	140, 315
Hsp92I	GRCGYC	2 cut(s)	173, 386
Hsp92II	CATG	1 cut(s)	411
HspAI	GCGC	1 cut(s)	182
KroI	GCCGGC	1 cut(s)	166
KroNI	GCCGGC	1 cut(s)	168
KspI	CCGCGG	1 cut(s)	392
Kzo9I	GATC	3 cut(s)	80, 186, 324
Lsp1109I	GCAGC	2 cut(s)	25, 28
LweI	GCATC	4 cut(s)	117, 204, 228, 270
MaeII	ACGT	2 cut(s)	140, 315
MaeIII	GTNAC	1 cut(s)	253
MalI	GATC	3 cut(s)	82, 188, 326
MboI	GATC	3 cut(s)	80, 186, 324
MboII	GAAGA	1 cut(s)	253
MflI	RGATCY	2 cut(s)	186, 324
MluCI	AATT	1 cut(s)	101
MnlI	CCTC	7 cut(s)	3, 83, 86, 96, 150, 347, 382
MreI	CGCCGGCG	1 cut(s)	166
MroNI	GCCGGC	1 cut(s)	166
MslI	CAYNNNNRTG	2 cut(s)	122, 278
MspA1I	CMGCKG	1 cut(s)	391
MspI	CCGG	2 cut(s)	167, 194
MspR9I	CCNGG	1 cut(s)	37
MvaI	CCWGG	1 cut(s)	37
MvnI	CGCG	2 cut(s)	206, 391
MwoI	GCNNNNNNNGC	4 cut(s)	13, 179, 190, 289
NaeI	GCCGGC	1 cut(s)	168
NdeII	GATC	3 cut(s)	80, 186, 324
NgoMIV	GCCGGC	1 cut(s)	166
NlaIII	CATG	1 cut(s)	411
NlaIV	GGNNCC	1 cut(s)	326
NmuCI	GTSAC	1 cut(s)	253
NotI	GCGGCCGC	1 cut(s)	161
PcsI	WCGNNNNNNNCGW	1 cut(s)	146
PdiI	GCCGGC	1 cut(s)	168
PfeI	GAWTC	3 cut(s)	97, 201, 358
PflFI	GACNNNGTC	1 cut(s)	139
PkrI	GCNGC	6 cut(s)	15, 18, 162, 165, 172, 390
Ppu21I	YACGTR	1 cut(s)	316
Psp6I	CCWGG	1 cut(s)	35
PspFI	CCCAGC	2 cut(s)	217, 292
PspGI	CCWGG	1 cut(s)	35
PspN4I	GGNNCC	1 cut(s)	326
PsuI	RGATCY	2 cut(s)	186, 324
PsyI	GACNNNGTC	1 cut(s)	139
RsaI	GTAC	2 cut(s)	47, 314
RsaNI	GTAC	2 cut(s)	46, 313
RseI	CAYNNNNRTG	2 cut(s)	122, 278
SacII	CCGCGG	1 cut(s)	392
SalI	GTCGAC	2 cut(s)	175, 382
SatI	GCNGC	6 cut(s)	14, 17, 161, 164, 171, 389
Sau3AI	GATC	3 cut(s)	80, 186, 324
ScrFI	CCNGG	1 cut(s)	37
SetI	ASST	5 cut(s)	54, 75, 143, 318, 417
SfaNI	GCATC	4 cut(s)	117, 204, 228, 270
Sfr303I	CCGCGG	1 cut(s)	392
SgrAI	CRCCGGYG	2 cut(s)	166, 193
SgrBI	CCGCGG	1 cut(s)	392
SgrDI	CGTCGACG	2 cut(s)	175, 382
SmiMI	CAYNNNNRTG	2 cut(s)	122, 278
Sse9I	AATT	1 cut(s)	101
SsiI	CCGC	8 cut(s)	160, 164, 170, 246, 320, 375, 389, 391
StyD4I	CCNGG	1 cut(s)	35
TaaI	ACNGT	2 cut(s)	121, 253
TaiI	ACGT	2 cut(s)	143, 318
TaqI	TCGA	5 cut(s)	176, 227, 332, 356, 383
TasI	AATT	1 cut(s)	101
TauI	GCSGC	4 cut(s)	163, 166, 173, 391
TfiI	GAWTC	3 cut(s)	97, 201, 358
TseFI	GTSAC	1 cut(s)	253
TseI	GCWGC	2 cut(s)	13, 16
Tsp45I	GTSAC	1 cut(s)	253
TspDTI	ATGAA	2 cut(s)	253, 262
TspGWI	ACGGA	1 cut(s)	331
Tth111I	GACNNNGTC	1 cut(s)	139
XmiI	GTMKAC	2 cut(s)	176, 383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.