Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0009139

Physical Location & Seq

Genomic Coordinates Forward (+)

60948065 .. 60950847

Gene Structure 2783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG295900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGATGAGGAGGGAGCAGCATCAGGACCAGCAATCTAGGGTTTTCTACGAGCTTTCCGCTCTAGTTCTCAGCCTTCTGCGGTCGCCGCCCACGCCGATTCAATTTTCCGATCAGTCTCCAGCGATTCCGCCGCCGCCGACGAATTCTTCTTCTCCTTCTTCTGTGTCTAGCTCTTCATCCAGGCGGCCGGCGGCGGCGGCGCAGATCTCGCCGGCGGGGTTCGCGTCGCTGATGCTGGGGATTTCGATGGCGCTGATGCTGTGCGGATCGGTGACGTTCTTCATCGGGTTCTTGTTGATGCCTTGGGTGCTCGGGTTGGTTATGGTGTTTTATGTGGCTGGAGTCGTCTCCAGTCTCTCTGTTTTGGGGAAGTCGATTCTTTGTTACGCCCCGCCGCCGCCGACGTCACCGCGGAAGGAGATTCCGGATAAATTCACATTCTTCGACAGCTGCTACTATTATGCCAAACTTCCAACCTTCATCCACCAAATAATATGTCTCTTCCATGCAAAATCTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

173

Amino Acids

18.91

Weight (kDa)

9.0

Isoelectric Point (pI)

82.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27290 AT1G27290
fragaria_vesca	FvH4_4g23540 FvH4_4g23540 FvH4_4g23540
malus_domestica	MD13G1121400.v1.1 MD16G1121700.v1.1
prunus_persica	Prupe.1G223700_v2.0.a1 Prupe.1G223700_v2.0.a1 Prupe.1G223700_v2.0.a1 Prupe.1G223700_v2.0.a1
pyrus_communis	pycom13g10580 pycom16g10410
rosa_chinensis	RchiOBHm_Chr4g0429941
rosa_laevigata	RLG00000007019
rosa_roxburghii	Rroxscaffold_5G00371770
rosa_rugosa	Rorug04G0239200 Rorug04G0239300 Rorug04G0239400
rosa_samantha	Rh4AG295900 Rh4DG299800
rosa_wichuraiana	Rw4G025630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	407
AccBSI	CCGCTC	1 cut(s)	59
AccII	CGCG	2 cut(s)	224, 412
AccIII	TCCGGA	1 cut(s)	424
AclWI	GGATC	1 cut(s)	274
AcoI	YGGCCR	1 cut(s)	185
AcsI	RAATTY	2 cut(s)	142, 431
AcyI	GRCGYC	1 cut(s)	404
AgsI	TTSAA	1 cut(s)	101
AjnI	CCWGG	1 cut(s)	179
AluBI	AGCT	3 cut(s)	52, 171, 450
AluI	AGCT	3 cut(s)	52, 171, 450
Alw21I	GWGCWC	1 cut(s)	312
Alw26I	GTCTC	4 cut(s)	120, 352, 359, 503
AlwI	GGATC	1 cut(s)	274
Ama87I	CYCGRG	1 cut(s)	311
Aor13HI	TCCGGA	1 cut(s)	424
AoxI	GGCC	1 cut(s)	185
ApeKI	GCWGC	2 cut(s)	16, 450
ApoI	RAATTY	2 cut(s)	142, 431
ArsI	GACNNNNNNTTYG	2 cut(s)	481, 513
AspLEI	GCGC	2 cut(s)	202, 253
AspS9I	GGNCC	1 cut(s)	25
AsuHPI	GGTGA	2 cut(s)	283, 399
AvaI	CYCGRG	1 cut(s)	311
AvaII	GGWCC	1 cut(s)	25
Bbv12I	GWGCWC	1 cut(s)	312
BbvI	GCAGC	2 cut(s)	28, 437
BccI	CCATC	1 cut(s)	241
BciT130I	CCWGG	1 cut(s)	181
BcoDI	GTCTC	4 cut(s)	120, 352, 359, 503
BfaI	CTAG	3 cut(s)	36, 62, 168
BfoI	RGCGCY	1 cut(s)	254
BglII	AGATCT	1 cut(s)	204
Bme1390I	CCNGG	1 cut(s)	181
Bme18I	GGWCC	1 cut(s)	25
BmeT110I	CYCGRG	1 cut(s)	311
BmgT120I	GGNCC	1 cut(s)	25
BmrFI	CCNGG	1 cut(s)	181
BmsI	GCATC	4 cut(s)	28, 222, 246, 288
BpmI	CTGGAG	3 cut(s)	102, 334, 360
BsaHI	GRCGYC	1 cut(s)	404
BsaJI	CCNNGG	2 cut(s)	302, 410
BsaWI	WCCGGW	1 cut(s)	424
Bse118I	RCCGGY	2 cut(s)	187, 211
Bse1I	ACTGG	1 cut(s)	351
BseAI	TCCGGA	1 cut(s)	424
BseBI	CCWGG	1 cut(s)	181
BseDI	CCNNGG	2 cut(s)	302, 410
BseGI	GGATG	2 cut(s)	176, 480
BseMII	CTCAG	1 cut(s)	82
BseNI	ACTGG	1 cut(s)	351
BseRI	GAGGAG	1 cut(s)	22
BseX3I	CGGCCG	1 cut(s)	185
BseXI	GCAGC	2 cut(s)	28, 437
BseYI	CCCAGC	1 cut(s)	235
Bsh1236I	CGCG	2 cut(s)	224, 412
Bsh1285I	CGRYCG	2 cut(s)	83, 188
BshFI	GGCC	1 cut(s)	187
BsiEI	CGRYCG	2 cut(s)	83, 188
BsiHKAI	GWGCWC	1 cut(s)	312
BsiHKCI	CYCGRG	1 cut(s)	311
BsiSI	CCGG	3 cut(s)	188, 212, 425
BsmAI	GTCTC	4 cut(s)	120, 352, 359, 503
BsmBI	CGTCTC	1 cut(s)	352
BsnI	GGCC	1 cut(s)	187
BsoBI	CYCGRG	1 cut(s)	311
Bsp1286I	GDGCHC	1 cut(s)	312
Bsp13I	TCCGGA	1 cut(s)	424
Bsp143I	GATC	3 cut(s)	109, 204, 266
BspANI	GGCC	1 cut(s)	187
BspCNI	CTCAG	1 cut(s)	81
BspEI	TCCGGA	1 cut(s)	424
BspFNI	CGCG	2 cut(s)	224, 412
BspPI	GGATC	1 cut(s)	274
BspQI	GCTCTTC	1 cut(s)	178
BsrBI	CCGCTC	1 cut(s)	59
BsrFI	RCCGGY	2 cut(s)	187, 211
BsrI	ACTGG	1 cut(s)	351
BssAI	RCCGGY	2 cut(s)	187, 211
BssECI	CCNNGG	2 cut(s)	302, 410
BssMI	GATC	3 cut(s)	109, 204, 266
BssNI	GRCGYC	1 cut(s)	404
BssT1I	CCWWGG	1 cut(s)	302
Bst2UI	CCWGG	1 cut(s)	181
Bst6I	CTCTTC	2 cut(s)	178, 506
BstACI	GRCGYC	1 cut(s)	404
BstC8I	GCNNGC	2 cut(s)	189, 213
BstDEI	CTNAG	1 cut(s)	68
BstDSI	CCRYGG	1 cut(s)	410
BstF5I	GGATG	2 cut(s)	176, 480
BstFNI	CGCG	2 cut(s)	224, 412
BstH2I	RGCGCY	1 cut(s)	254
BstHHI	GCGC	2 cut(s)	202, 253
BstKTI	GATC	3 cut(s)	112, 207, 269
BstMAI	GTCTC	4 cut(s)	120, 352, 359, 503
BstMBI	GATC	3 cut(s)	109, 204, 266
BstMCI	CGRYCG	2 cut(s)	83, 188
BstMWI	GCNNNNNNNGC	6 cut(s)	85, 91, 197, 208, 221, 307
BstNI	CCWGG	1 cut(s)	181
BstSCI	CCNGG	1 cut(s)	179
BstUI	CGCG	2 cut(s)	224, 412
BstV1I	GCAGC	2 cut(s)	28, 437
BstX2I	RGATCY	1 cut(s)	204
BstYI	RGATCY	1 cut(s)	204
BstZI	CGGCCG	1 cut(s)	185
BsuRI	GGCC	1 cut(s)	187
BtgI	CCRYGG	1 cut(s)	410
BtsCI	GGATG	2 cut(s)	176, 480
Cac8I	GCNNGC	2 cut(s)	189, 213
CfoI	GCGC	2 cut(s)	202, 253
Cfr10I	RCCGGY	2 cut(s)	187, 211
Cfr13I	GGNCC	1 cut(s)	25
Cfr42I	CCGCGG	1 cut(s)	413
CseI	GACGC	1 cut(s)	213
CviAII	CATG	1 cut(s)	506
CviJI	RGCY	6 cut(s)	52, 72, 171, 187, 338, 450
CviKI_1	RGCY	6 cut(s)	52, 72, 171, 187, 338, 450
DdeI	CTNAG	1 cut(s)	68
DpnI	GATC	3 cut(s)	111, 206, 268
DpnII	GATC	3 cut(s)	109, 204, 266
EaeI	YGGCCR	1 cut(s)	185
EagI	CGGCCG	1 cut(s)	185
Eam1104I	CTCTTC	2 cut(s)	178, 506
EarI	CTCTTC	2 cut(s)	178, 506
EciI	GGCGGA	1 cut(s)	117
EclXI	CGGCCG	1 cut(s)	185
Eco130I	CCWWGG	1 cut(s)	302
Eco47I	GGWCC	1 cut(s)	25
Eco52I	CGGCCG	1 cut(s)	185
Eco88I	CYCGRG	1 cut(s)	311
EcoRI	GAATTC	1 cut(s)	142
EcoRII	CCWGG	1 cut(s)	179
EcoT14I	CCWWGG	1 cut(s)	302
ErhI	CCWWGG	1 cut(s)	302
Esp3I	CGTCTC	1 cut(s)	352
FaeI	CATG	1 cut(s)	509
FaiI	YATR	5 cut(s)	323, 333, 462, 496, 507
FatI	CATG	1 cut(s)	505
FauI	CCCGC	2 cut(s)	208, 399
FokI	GGATG	2 cut(s)	163, 467
FspBI	CTAG	3 cut(s)	36, 62, 168
GlaI	GCGC	2 cut(s)	201, 252
GsaI	CCCAGC	1 cut(s)	239
GsuI	CTGGAG	3 cut(s)	102, 334, 360
HaeII	RGCGCY	1 cut(s)	254
HaeIII	GGCC	1 cut(s)	187
HapII	CCGG	3 cut(s)	188, 212, 425
HgaI	GACGC	1 cut(s)	213
HhaI	GCGC	2 cut(s)	202, 253
Hin1I	GRCGYC	1 cut(s)	404
Hin1II	CATG	1 cut(s)	509
Hin6I	GCGC	2 cut(s)	200, 251
HinP1I	GCGC	2 cut(s)	200, 251
HinfI	GANTC	5 cut(s)	97, 124, 342, 376, 421
HpaII	CCGG	3 cut(s)	188, 212, 425
HphI	GGTGA	2 cut(s)	283, 399
Hpy188I	TCNGA	2 cut(s)	109, 517
Hpy188III	TCNNGA	2 cut(s)	23, 425
Hpy99I	CGWCG	3 cut(s)	142, 229, 406
HpyAV	CCTTC	4 cut(s)	83, 165, 409, 487
HpyCH4IV	ACGT	2 cut(s)	275, 404
HpyCH4V	TGCA	1 cut(s)	509
HpyF10VI	GCNNNNNNNGC	6 cut(s)	85, 91, 197, 208, 221, 307
HpyF3I	CTNAG	1 cut(s)	68
HpySE526I	ACGT	2 cut(s)	275, 404
Hsp92I	GRCGYC	1 cut(s)	404
Hsp92II	CATG	1 cut(s)	509
HspAI	GCGC	2 cut(s)	200, 251
Kpn2I	TCCGGA	1 cut(s)	424
KroI	GCCGGC	2 cut(s)	187, 211
KroNI	GCCGGC	2 cut(s)	189, 213
KspI	CCGCGG	1 cut(s)	413
Kzo9I	GATC	3 cut(s)	109, 204, 266
LguI	GCTCTTC	1 cut(s)	178
LmnI	GCTCC	1 cut(s)	13
Lsp1109I	GCAGC	2 cut(s)	28, 437
LweI	GCATC	4 cut(s)	28, 222, 246, 288
MaeI	CTAG	3 cut(s)	36, 62, 168
MaeII	ACGT	2 cut(s)	275, 404
MaeIII	GTNAC	3 cut(s)	271, 383, 405
MalI	GATC	3 cut(s)	111, 206, 268
MbiI	CCGCTC	1 cut(s)	59
MboI	GATC	3 cut(s)	109, 204, 266
MboII	GAAGA	7 cut(s)	138, 141, 150, 165, 271, 433, 493
MflI	RGATCY	1 cut(s)	204
MhlI	GDGCHC	1 cut(s)	312
MluCI	AATT	3 cut(s)	101, 142, 431
MlyI	GAGTC	1 cut(s)	351
MmeI	TCCRAC	1 cut(s)	497
MnlI	CCTC	1 cut(s)	3
MreI	CGCCGGCG	1 cut(s)	211
MroI	TCCGGA	1 cut(s)	424
MroNI	GCCGGC	2 cut(s)	187, 211
MspA1I	CMGCKG	2 cut(s)	412, 450
MspI	CCGG	3 cut(s)	188, 212, 425
MspR9I	CCNGG	1 cut(s)	181
MvaI	CCWGG	1 cut(s)	181
MvnI	CGCG	2 cut(s)	224, 412
MwoI	GCNNNNNNNGC	6 cut(s)	85, 91, 197, 208, 221, 307
NaeI	GCCGGC	2 cut(s)	189, 213
NdeII	GATC	3 cut(s)	109, 204, 266
NgoMIV	GCCGGC	2 cut(s)	187, 211
NlaIII	CATG	1 cut(s)	509
NmuCI	GTSAC	2 cut(s)	271, 405
PciSI	GCTCTTC	1 cut(s)	178
PdiI	GCCGGC	2 cut(s)	189, 213
PfeI	GAWTC	4 cut(s)	97, 124, 376, 421
PleI	GAGTC	1 cut(s)	350
PpsI	GAGTC	1 cut(s)	350
Psp6I	CCWGG	1 cut(s)	179
PspFI	CCCAGC	1 cut(s)	235
PspGI	CCWGG	1 cut(s)	179
PspPI	GGNCC	1 cut(s)	25
PsuI	RGATCY	1 cut(s)	204
PvuII	CAGCTG	1 cut(s)	450
SacII	CCGCGG	1 cut(s)	413
SapI	GCTCTTC	1 cut(s)	178
Sau3AI	GATC	3 cut(s)	109, 204, 266
Sau96I	GGNCC	1 cut(s)	25
SchI	GAGTC	1 cut(s)	351
ScrFI	CCNGG	1 cut(s)	181
SduI	GDGCHC	1 cut(s)	312
SetI	ASST	6 cut(s)	54, 173, 278, 407, 452, 479
SfaNI	GCATC	4 cut(s)	28, 222, 246, 288
Sfr303I	CCGCGG	1 cut(s)	413
SgrAI	CRCCGGYG	1 cut(s)	211
SgrBI	CCGCGG	1 cut(s)	413
SinI	GGWCC	1 cut(s)	25
Sse9I	AATT	3 cut(s)	101, 142, 431
SspMI	CTAG	3 cut(s)	36, 62, 168
StyD4I	CCNGG	1 cut(s)	179
StyI	CCWWGG	1 cut(s)	302
TaiI	ACGT	2 cut(s)	278, 407
TaqI	TCGA	3 cut(s)	245, 374, 444
TasI	AATT	3 cut(s)	101, 142, 431
TauI	GCSGC	9 cut(s)	88, 133, 136, 187, 194, 197, 200, 397, 400
TfiI	GAWTC	4 cut(s)	97, 124, 376, 421
TseFI	GTSAC	2 cut(s)	271, 405
TseI	GCWGC	2 cut(s)	16, 450
Tsp45I	GTSAC	2 cut(s)	271, 405
TspDTI	ATGAA	3 cut(s)	165, 271, 469
VpaK11BI	GGWCC	1 cut(s)	25
XapI	RAATTY	2 cut(s)	142, 431
XspI	CTAG	3 cut(s)	36, 62, 168
ZraI	GACGTC	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.