Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0009139

Physical Location & Seq

Genomic Coordinates Forward (+)

23758220 .. 23761118

Gene Structure 2899 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G223700.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGATGCGAAGGCAAGACCAGCAAGACCAGCAATCGAGGGTTTTCTACGAGCTATCGGCTCTGGTTCTCAACCTCCTCCGATCTCCTCCCACGCCGATTCAGTTCTCCGATCACTCACCGGTGGTGCCCTCCTCGTCGCCGTCTTCGTCGAGGCGGCCGCCGGCGGCGGCGACGCAGATTTCGCCAGCGGGGTTCGCCTCGCTGATGCTGGGGATTTCGATGGCTCTGATGCTCTGTGGATCGGTGACTTTCTTCATTGGTTTCATATTGATGCCTTGGGTTCTCGGATTGGTTATGGTCTTCTACGTGGCTGGCATCGTCTCCAGCCTCTCTGTTTTGGGAAAGTCGATTCTTTGTTACGCGTCGGCTCCGTCATCACCGCGAAAGGAGATTCCTGGTATTGAAAGTGATATATGGCGGATAATTAGTTGGGGATATATTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

149

Amino Acids

16.14

Weight (kDa)

9.18

Isoelectric Point (pI)

82.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27290 AT1G27290
fragaria_vesca	FvH4_4g23540 FvH4_4g23540 FvH4_4g23540
malus_domestica	MD13G1121400.v1.1 MD16G1121700.v1.1
prunus_persica	Prupe.1G223700_v2.0.a1 Prupe.1G223700_v2.0.a1 Prupe.1G223700_v2.0.a1 Prupe.1G223700_v2.0.a1
pyrus_communis	pycom13g10580 pycom16g10410
rosa_chinensis	RchiOBHm_Chr4g0429941
rosa_laevigata	RLG00000007019
rosa_roxburghii	Rroxscaffold_5G00371770
rosa_rugosa	Rorug04G0239200 Rorug04G0239300 Rorug04G0239400
rosa_samantha	Rh4AG295900 Rh4DG299800
rosa_wichuraiana	Rw4G025630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	124
AccII	CGCG	2 cut(s)	362, 382
AciI	CCGC	7 cut(s)	154, 158, 164, 167, 188, 380, 418
AclWI	GGATC	1 cut(s)	247
AcoI	YGGCCR	1 cut(s)	155
AflIII	ACRYGT	1 cut(s)	360
AgeI	ACCGGT	1 cut(s)	118
AgsI	TTSAA	1 cut(s)	404
AjnI	CCWGG	1 cut(s)	394
AluBI	AGCT	1 cut(s)	52
AluI	AGCT	1 cut(s)	52
Alw26I	GTCTC	1 cut(s)	325
AlwI	GGATC	1 cut(s)	247
AoxI	GGCC	1 cut(s)	155
ArsI	GACNNNNNNTTYG	2 cut(s)	163, 195
AsiGI	ACCGGT	1 cut(s)	118
AsuHPI	GGTGA	3 cut(s)	108, 256, 369
BaeGI	GKGCMC	1 cut(s)	129
BanI	GGYRCC	1 cut(s)	124
BbsI	GAAGAC	2 cut(s)	135, 292
BccI	CCATC	1 cut(s)	214
BceAI	ACGGC	1 cut(s)	124
BciT130I	CCWGG	1 cut(s)	396
BcoDI	GTCTC	1 cut(s)	325
BisI	GCNGC	4 cut(s)	155, 158, 165, 168
BlsI	GCNGC	4 cut(s)	156, 159, 166, 169
Bme1390I	CCNGG	1 cut(s)	396
BmiI	GGNNCC	2 cut(s)	126, 369
BmrFI	CCNGG	1 cut(s)	396
BmsI	GCATC	4 cut(s)	195, 219, 261, 324
BpiI	GAAGAC	2 cut(s)	135, 292
BpmI	CTGGAG	1 cut(s)	307
BsaAI	YACGTR	1 cut(s)	307
BsaJI	CCNNGG	1 cut(s)	275
BsaWI	WCCGGW	1 cut(s)	118
Bse118I	RCCGGY	2 cut(s)	118, 160
BseBI	CCWGG	1 cut(s)	396
BseDI	CCNNGG	1 cut(s)	275
BseRI	GAGGAG	3 cut(s)	65, 75, 121
BseSI	GKGCMC	1 cut(s)	129
BseX3I	CGGCCG	1 cut(s)	155
BseYI	CCCAGC	1 cut(s)	208
Bsh1236I	CGCG	2 cut(s)	362, 382
Bsh1285I	CGRYCG	1 cut(s)	158
BshFI	GGCC	1 cut(s)	157
BshNI	GGYRCC	1 cut(s)	124
BshTI	ACCGGT	1 cut(s)	118
BsiEI	CGRYCG	1 cut(s)	158
BsiSI	CCGG	2 cut(s)	119, 161
BsmAI	GTCTC	1 cut(s)	325
BsmBI	CGTCTC	1 cut(s)	325
BsnI	GGCC	1 cut(s)	157
Bsp1286I	GDGCHC	1 cut(s)	129
Bsp143I	GATC	3 cut(s)	80, 109, 239
BspACI	CCGC	7 cut(s)	154, 158, 164, 167, 188, 380, 418
BspANI	GGCC	1 cut(s)	157
BspFNI	CGCG	2 cut(s)	362, 382
BspLI	GGNNCC	2 cut(s)	126, 369
BspPI	GGATC	1 cut(s)	247
BspT107I	GGYRCC	1 cut(s)	124
BsrFI	RCCGGY	2 cut(s)	118, 160
BssAI	RCCGGY	2 cut(s)	118, 160
BssECI	CCNNGG	1 cut(s)	275
BssMI	GATC	3 cut(s)	80, 109, 239
BssT1I	CCWWGG	1 cut(s)	275
Bst2UI	CCWGG	1 cut(s)	396
BstBAI	YACGTR	1 cut(s)	307
BstC8I	GCNNGC	3 cut(s)	162, 186, 313
BstFNI	CGCG	2 cut(s)	362, 382
BstKTI	GATC	3 cut(s)	83, 112, 242
BstMAI	GTCTC	1 cut(s)	325
BstMBI	GATC	3 cut(s)	80, 109, 239
BstMCI	CGRYCG	1 cut(s)	158
BstMWI	GCNNNNNNNGC	4 cut(s)	19, 28, 181, 194
BstNI	CCWGG	1 cut(s)	396
BstSCI	CCNGG	1 cut(s)	394
BstSLI	GKGCMC	1 cut(s)	129
BstUI	CGCG	2 cut(s)	362, 382
BstV2I	GAAGAC	2 cut(s)	135, 292
BstZI	CGGCCG	1 cut(s)	155
BsuRI	GGCC	1 cut(s)	157
Cac8I	GCNNGC	3 cut(s)	162, 186, 313
CciNI	GCGGCCGC	1 cut(s)	155
Cfr10I	RCCGGY	2 cut(s)	118, 160
CseI	GACGC	2 cut(s)	181, 351
CspAI	ACCGGT	1 cut(s)	118
CviJI	RGCY	7 cut(s)	52, 59, 157, 224, 311, 327, 368
CviKI_1	RGCY	7 cut(s)	52, 59, 157, 224, 311, 327, 368
DpnI	GATC	3 cut(s)	82, 111, 241
DpnII	GATC	3 cut(s)	80, 109, 239
EaeI	YGGCCR	1 cut(s)	155
EagI	CGGCCG	1 cut(s)	155
EciI	GGCGGA	1 cut(s)	433
EclXI	CGGCCG	1 cut(s)	155
Eco130I	CCWWGG	1 cut(s)	275
Eco52I	CGGCCG	1 cut(s)	155
EcoRII	CCWGG	1 cut(s)	394
EcoT14I	CCWWGG	1 cut(s)	275
ErhI	CCWWGG	1 cut(s)	275
Esp3I	CGTCTC	1 cut(s)	325
FaiI	YATR	5 cut(s)	266, 296, 413, 415, 438
FauI	CCCGC	1 cut(s)	181
Fnu4HI	GCNGC	4 cut(s)	155, 158, 165, 168
Fsp4HI	GCNGC	4 cut(s)	155, 158, 165, 168
GluI	GCNGC	4 cut(s)	155, 158, 165, 168
GsaI	CCCAGC	1 cut(s)	212
GsuI	CTGGAG	1 cut(s)	307
HaeIII	GGCC	1 cut(s)	157
HapII	CCGG	2 cut(s)	119, 161
HgaI	GACGC	2 cut(s)	181, 351
HinfI	GANTC	3 cut(s)	97, 349, 391
HpaII	CCGG	2 cut(s)	119, 161
HphI	GGTGA	3 cut(s)	108, 256, 369
Hpy188I	TCNGA	5 cut(s)	80, 109, 228, 287, 446
Hpy99I	CGWCG	4 cut(s)	139, 151, 175, 367
HpyAV	CCTTC	1 cut(s)	3
HpyCH4IV	ACGT	1 cut(s)	306
HpyF10VI	GCNNNNNNNGC	4 cut(s)	19, 28, 181, 194
HpySE526I	ACGT	1 cut(s)	306
KroI	GCCGGC	1 cut(s)	160
KroNI	GCCGGC	1 cut(s)	162
Kzo9I	GATC	3 cut(s)	80, 109, 239
LmnI	GCTCC	1 cut(s)	373
LweI	GCATC	4 cut(s)	195, 219, 261, 324
MaeII	ACGT	1 cut(s)	306
MaeIII	GTNAC	2 cut(s)	244, 356
MalI	GATC	3 cut(s)	82, 111, 241
MboI	GATC	3 cut(s)	80, 109, 239
MboII	GAAGA	3 cut(s)	135, 244, 292
MhlI	GDGCHC	1 cut(s)	129
MluCI	AATT	1 cut(s)	423
MluI	ACGCGT	1 cut(s)	360
MnlI	CCTC	9 cut(s)	30, 83, 86, 96, 139, 142, 144, 208, 338
MreI	CGCCGGCG	1 cut(s)	160
MroNI	GCCGGC	1 cut(s)	160
MslI	CAYNNNNRTG	1 cut(s)	269
MspA1I	CMGCKG	1 cut(s)	188
MspI	CCGG	2 cut(s)	119, 161
MspR9I	CCNGG	1 cut(s)	396
MvaI	CCWGG	1 cut(s)	396
MvnI	CGCG	2 cut(s)	362, 382
MwoI	GCNNNNNNNGC	4 cut(s)	19, 28, 181, 194
NaeI	GCCGGC	1 cut(s)	162
NdeII	GATC	3 cut(s)	80, 109, 239
NgoMIV	GCCGGC	1 cut(s)	160
NlaIV	GGNNCC	2 cut(s)	126, 369
NmuCI	GTSAC	1 cut(s)	244
NotI	GCGGCCGC	1 cut(s)	155
PcsI	WCGNNNNNNNCGW	1 cut(s)	143
PdiI	GCCGGC	1 cut(s)	162
PfeI	GAWTC	3 cut(s)	97, 349, 391
PinAI	ACCGGT	1 cut(s)	118
PkrI	GCNGC	4 cut(s)	156, 159, 166, 169
Ppu21I	YACGTR	1 cut(s)	307
Psp6I	CCWGG	1 cut(s)	394
PspFI	CCCAGC	1 cut(s)	208
PspGI	CCWGG	1 cut(s)	394
PspN4I	GGNNCC	2 cut(s)	126, 369
RseI	CAYNNNNRTG	1 cut(s)	269
SatI	GCNGC	4 cut(s)	155, 158, 165, 168
Sau3AI	GATC	3 cut(s)	80, 109, 239
ScrFI	CCNGG	1 cut(s)	396
SduI	GDGCHC	1 cut(s)	129
SetI	ASST	3 cut(s)	54, 75, 309
SfaNI	GCATC	4 cut(s)	195, 219, 261, 324
SgrAI	CRCCGGYG	2 cut(s)	118, 160
SmiMI	CAYNNNNRTG	1 cut(s)	269
Sse9I	AATT	1 cut(s)	423
SsiI	CCGC	7 cut(s)	154, 158, 164, 167, 188, 380, 418
StyD4I	CCNGG	1 cut(s)	394
StyI	CCWWGG	1 cut(s)	275
TaiI	ACGT	1 cut(s)	309
TaqI	TCGA	4 cut(s)	35, 149, 218, 347
TasI	AATT	1 cut(s)	423
TauI	GCSGC	4 cut(s)	157, 160, 167, 170
TfiI	GAWTC	3 cut(s)	97, 349, 391
TseFI	GTSAC	1 cut(s)	244
Tsp45I	GTSAC	1 cut(s)	244
TspDTI	ATGAA	2 cut(s)	244, 253
TspGWI	ACGGA	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.