RchiOBHm_Chr4g0429941

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0009139
Physical Location & Seq
Forward (+)
54655030 .. 54657619
2590 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39871

Sequence Viewer

Length: 441 bp
ATGATGAGAAGGGAGCAGCATCAGGACCAGCAATCCAGGGTTTTCTACGAGCTTTCCGCTCTAGTTCTCAGCCTTCTGCGGTCGCCGCCCACGCCGATTCAATTTTCCGATCAGTCTCCGGCCATTCCGCCGCCGACGAATTCTTCTTCTTCTTCTTCTGTTTCTAGCTCTTCATCCAGGCGGCCGGCGGCGGCGCCGCAGATCTCGCCGGCGGGGTTCGCGTCGCTGATGCTGGGGATTTCGATGGCGCTGATGCTGTGTGGATCGGTGACGTTCTTCATCGGGTTCTTGTTGATGCCTTGGGTGCTCGGGTTGGTTATGGTGTTTTATGTGGCTGGAGTCGTCTCCACTCTCTCTGTTTTGGGGAAGTCGATTCTTTGTTACGCCTCGCCGCCGCCGACGTCACAGCGGAAGGAGATTCCGGCATGGAAGTTATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

15.73

Weight (kDa)

9.78

Isoelectric Point (pI)

82.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 404
AccB1I GGYRCC 1 cut(s) 193
AccBSI CCGCTC 1 cut(s) 59
AccII CGCG 1 cut(s) 221
AclWI GGATC 1 cut(s) 271
AcoI YGGCCR 2 cut(s) 120, 182
AcsI RAATTY 1 cut(s) 139
AcyI GRCGYC 2 cut(s) 194, 401
AgsI TTSAA 1 cut(s) 101
AjnI CCWGG 2 cut(s) 35, 176
AluBI AGCT 2 cut(s) 52, 168
AluI AGCT 2 cut(s) 52, 168
Alw21I GWGCWC 1 cut(s) 309
Alw26I GTCTC 2 cut(s) 120, 349
AlwI GGATC 1 cut(s) 271
Ama87I CYCGRG 1 cut(s) 308
AoxI GGCC 2 cut(s) 120, 182
ApeKI GCWGC 1 cut(s) 16
ApoI RAATTY 1 cut(s) 139
AspLEI GCGC 2 cut(s) 196, 250
AspS9I GGNCC 1 cut(s) 25
AsuHPI GGTGA 1 cut(s) 280
AvaI CYCGRG 1 cut(s) 308
AvaII GGWCC 1 cut(s) 25
BanI GGYRCC 1 cut(s) 193
Bbv12I GWGCWC 1 cut(s) 309
BbvI GCAGC 1 cut(s) 28
BccI CCATC 1 cut(s) 238
BciT130I CCWGG 2 cut(s) 37, 178
BcoDI GTCTC 2 cut(s) 120, 349
BfaI CTAG 2 cut(s) 62, 165
BfoI RGCGCY 2 cut(s) 197, 251
BglII AGATCT 1 cut(s) 201
BisI GCNGC 9 cut(s) 17, 86, 131, 182, 189, 192, 197, 392, 395
BlsI GCNGC 9 cut(s) 18, 87, 132, 183, 190, 193, 198, 393, 396
Bme1390I CCNGG 2 cut(s) 37, 178
Bme18I GGWCC 1 cut(s) 25
BmeT110I CYCGRG 1 cut(s) 308
BmgT120I GGNCC 1 cut(s) 25
BmiI GGNNCC 1 cut(s) 195
BmrFI CCNGG 2 cut(s) 37, 178
BmsI GCATC 4 cut(s) 28, 219, 243, 285
BpmI CTGGAG 1 cut(s) 357
BsaHI GRCGYC 2 cut(s) 194, 401
BsaJI CCNNGG 2 cut(s) 36, 299
Bse118I RCCGGY 2 cut(s) 184, 208
BseBI CCWGG 2 cut(s) 37, 178
BseDI CCNNGG 2 cut(s) 36, 299
BseGI GGATG 1 cut(s) 173
BseMII CTCAG 1 cut(s) 82
BseX3I CGGCCG 1 cut(s) 182
BseXI GCAGC 1 cut(s) 28
BseYI CCCAGC 1 cut(s) 232
Bsh1236I CGCG 1 cut(s) 221
Bsh1285I CGRYCG 2 cut(s) 83, 185
BshFI GGCC 2 cut(s) 122, 184
BshNI GGYRCC 1 cut(s) 193
BsiEI CGRYCG 2 cut(s) 83, 185
BsiHKAI GWGCWC 1 cut(s) 309
BsiHKCI CYCGRG 1 cut(s) 308
BsiSI CCGG 4 cut(s) 119, 185, 209, 422
BsmAI GTCTC 2 cut(s) 120, 349
BsmBI CGTCTC 1 cut(s) 349
BsnI GGCC 2 cut(s) 122, 184
BsoBI CYCGRG 1 cut(s) 308
Bsp1286I GDGCHC 1 cut(s) 309
Bsp143I GATC 3 cut(s) 109, 201, 263
BspANI GGCC 2 cut(s) 122, 184
BspCNI CTCAG 1 cut(s) 81
BspFNI CGCG 1 cut(s) 221
BspLI GGNNCC 1 cut(s) 195
BspPI GGATC 1 cut(s) 271
BspQI GCTCTTC 1 cut(s) 175
BspT107I GGYRCC 1 cut(s) 193
BsrBI CCGCTC 1 cut(s) 59
BsrFI RCCGGY 2 cut(s) 184, 208
BssAI RCCGGY 2 cut(s) 184, 208
BssECI CCNNGG 2 cut(s) 36, 299
BssMI GATC 3 cut(s) 109, 201, 263
BssNI GRCGYC 2 cut(s) 194, 401
BssT1I CCWWGG 1 cut(s) 299
Bst2UI CCWGG 2 cut(s) 37, 178
Bst6I CTCTTC 1 cut(s) 175
BstACI GRCGYC 2 cut(s) 194, 401
BstC8I GCNNGC 2 cut(s) 186, 210
BstDEI CTNAG 1 cut(s) 68
BstF5I GGATG 1 cut(s) 173
BstFNI CGCG 1 cut(s) 221
BstH2I RGCGCY 2 cut(s) 197, 251
BstHHI GCGC 2 cut(s) 196, 250
BstKTI GATC 3 cut(s) 112, 204, 266
BstMAI GTCTC 2 cut(s) 120, 349
BstMBI GATC 3 cut(s) 109, 201, 263
BstMCI CGRYCG 2 cut(s) 83, 185
BstMWI GCNNNNNNNGC 5 cut(s) 85, 91, 205, 218, 304
BstNI CCWGG 2 cut(s) 37, 178
BstSCI CCNGG 2 cut(s) 35, 176
BstUI CGCG 1 cut(s) 221
BstV1I GCAGC 1 cut(s) 28
BstX2I RGATCY 1 cut(s) 201
BstYI RGATCY 1 cut(s) 201
BstZI CGGCCG 1 cut(s) 182
BsuRI GGCC 2 cut(s) 122, 184
BtsCI GGATG 1 cut(s) 173
Cac8I GCNNGC 2 cut(s) 186, 210
CfoI GCGC 2 cut(s) 196, 250
Cfr10I RCCGGY 2 cut(s) 184, 208
Cfr13I GGNCC 1 cut(s) 25
CseI GACGC 1 cut(s) 210
CviAII CATG 1 cut(s) 426
CviJI RGCY 6 cut(s) 52, 72, 122, 168, 184, 335
CviKI_1 RGCY 6 cut(s) 52, 72, 122, 168, 184, 335
DdeI CTNAG 1 cut(s) 68
DinI GGCGCC 1 cut(s) 195
DpnI GATC 3 cut(s) 111, 203, 265
DpnII GATC 3 cut(s) 109, 201, 263
EaeI YGGCCR 2 cut(s) 120, 182
EagI CGGCCG 1 cut(s) 182
Eam1104I CTCTTC 1 cut(s) 175
EarI CTCTTC 1 cut(s) 175
EciI GGCGGA 1 cut(s) 117
EclXI CGGCCG 1 cut(s) 182
Eco130I CCWWGG 1 cut(s) 299
Eco47I GGWCC 1 cut(s) 25
Eco52I CGGCCG 1 cut(s) 182
Eco88I CYCGRG 1 cut(s) 308
EcoRI GAATTC 1 cut(s) 139
EcoRII CCWGG 2 cut(s) 35, 176
EcoT14I CCWWGG 1 cut(s) 299
EgeI GGCGCC 1 cut(s) 195
EheI GGCGCC 1 cut(s) 195
ErhI CCWWGG 1 cut(s) 299
Esp3I CGTCTC 1 cut(s) 349
FaeI CATG 1 cut(s) 429
FaiI YATR 3 cut(s) 320, 330, 427
FatI CATG 1 cut(s) 425
FauI CCCGC 1 cut(s) 205
Fnu4HI GCNGC 9 cut(s) 17, 86, 131, 182, 189, 192, 197, 392, 395
FokI GGATG 1 cut(s) 160
Fsp4HI GCNGC 9 cut(s) 17, 86, 131, 182, 189, 192, 197, 392, 395
FspBI CTAG 2 cut(s) 62, 165
GlaI GCGC 2 cut(s) 195, 249
GluI GCNGC 9 cut(s) 17, 86, 131, 182, 189, 192, 197, 392, 395
GsaI CCCAGC 1 cut(s) 236
GsuI CTGGAG 1 cut(s) 357
HaeII RGCGCY 2 cut(s) 197, 251
HaeIII GGCC 2 cut(s) 122, 184
HapII CCGG 4 cut(s) 119, 185, 209, 422
HgaI GACGC 1 cut(s) 210
HhaI GCGC 2 cut(s) 196, 250
Hin1I GRCGYC 2 cut(s) 194, 401
Hin1II CATG 1 cut(s) 429
Hin6I GCGC 2 cut(s) 194, 248
HinP1I GCGC 2 cut(s) 194, 248
HinfI GANTC 4 cut(s) 97, 339, 373, 418
HpaII CCGG 4 cut(s) 119, 185, 209, 422
HphI GGTGA 1 cut(s) 280
Hpy188I TCNGA 1 cut(s) 109
Hpy188III TCNNGA 1 cut(s) 23
Hpy99I CGWCG 3 cut(s) 139, 226, 403
HpyAV CCTTC 3 cut(s) 3, 83, 406
HpyCH4IV ACGT 2 cut(s) 272, 401
HpyF10VI GCNNNNNNNGC 5 cut(s) 85, 91, 205, 218, 304
HpyF3I CTNAG 1 cut(s) 68
HpySE526I ACGT 2 cut(s) 272, 401
Hsp92I GRCGYC 2 cut(s) 194, 401
Hsp92II CATG 1 cut(s) 429
HspAI GCGC 2 cut(s) 194, 248
KasI GGCGCC 1 cut(s) 193
KroI GCCGGC 2 cut(s) 184, 208
KroNI GCCGGC 2 cut(s) 186, 210
Kzo9I GATC 3 cut(s) 109, 201, 263
LguI GCTCTTC 1 cut(s) 175
LmnI GCTCC 1 cut(s) 13
Lsp1109I GCAGC 1 cut(s) 28
LweI GCATC 4 cut(s) 28, 219, 243, 285
MaeI CTAG 2 cut(s) 62, 165
MaeII ACGT 2 cut(s) 272, 401
MaeIII GTNAC 3 cut(s) 268, 380, 402
MalI GATC 3 cut(s) 111, 203, 265
MbiI CCGCTC 1 cut(s) 59
MboI GATC 3 cut(s) 109, 201, 263
MboII GAAGA 7 cut(s) 135, 138, 141, 144, 147, 162, 268
MflI RGATCY 1 cut(s) 201
MhlI GDGCHC 1 cut(s) 309
MluCI AATT 2 cut(s) 101, 139
Mly113I GGCGCC 1 cut(s) 194
MlyI GAGTC 1 cut(s) 348
MnlI CCTC 1 cut(s) 397
MreI CGCCGGCG 1 cut(s) 208
MroNI GCCGGC 2 cut(s) 184, 208
MspA1I CMGCKG 1 cut(s) 409
MspI CCGG 4 cut(s) 119, 185, 209, 422
MspR9I CCNGG 2 cut(s) 37, 178
MvaI CCWGG 2 cut(s) 37, 178
MvnI CGCG 1 cut(s) 221
MwoI GCNNNNNNNGC 5 cut(s) 85, 91, 205, 218, 304
NaeI GCCGGC 2 cut(s) 186, 210
NarI GGCGCC 1 cut(s) 194
NdeII GATC 3 cut(s) 109, 201, 263
NgoMIV GCCGGC 2 cut(s) 184, 208
NlaIII CATG 1 cut(s) 429
NlaIV GGNNCC 1 cut(s) 195
NmuCI GTSAC 2 cut(s) 268, 402
PciSI GCTCTTC 1 cut(s) 175
PcsI WCGNNNNNNNCGW 1 cut(s) 395
PdiI GCCGGC 2 cut(s) 186, 210
PfeI GAWTC 3 cut(s) 97, 373, 418
PkrI GCNGC 9 cut(s) 18, 87, 132, 183, 190, 193, 198, 393, 396
PleI GAGTC 1 cut(s) 347
PluTI GGCGCC 1 cut(s) 197
PpsI GAGTC 1 cut(s) 347
Psp6I CCWGG 2 cut(s) 35, 176
PspFI CCCAGC 1 cut(s) 232
PspGI CCWGG 2 cut(s) 35, 176
PspN4I GGNNCC 1 cut(s) 195
PspPI GGNCC 1 cut(s) 25
PsuI RGATCY 1 cut(s) 201
SapI GCTCTTC 1 cut(s) 175
SatI GCNGC 9 cut(s) 17, 86, 131, 182, 189, 192, 197, 392, 395
Sau3AI GATC 3 cut(s) 109, 201, 263
Sau96I GGNCC 1 cut(s) 25
SchI GAGTC 1 cut(s) 348
ScrFI CCNGG 2 cut(s) 37, 178
SduI GDGCHC 1 cut(s) 309
SetI ASST 4 cut(s) 54, 170, 275, 404
SfaNI GCATC 4 cut(s) 28, 219, 243, 285
SfoI GGCGCC 1 cut(s) 195
SgrAI CRCCGGYG 1 cut(s) 208
SinI GGWCC 1 cut(s) 25
Sse9I AATT 2 cut(s) 101, 139
SspDI GGCGCC 1 cut(s) 193
SspMI CTAG 2 cut(s) 62, 165
StyD4I CCNGG 2 cut(s) 35, 176
StyI CCWWGG 1 cut(s) 299
TaiI ACGT 2 cut(s) 275, 404
TaqI TCGA 2 cut(s) 242, 371
TasI AATT 2 cut(s) 101, 139
TauI GCSGC 8 cut(s) 88, 133, 184, 191, 194, 199, 394, 397
TfiI GAWTC 3 cut(s) 97, 373, 418
TseFI GTSAC 2 cut(s) 268, 402
TseI GCWGC 1 cut(s) 16
Tsp45I GTSAC 2 cut(s) 268, 402
TspDTI ATGAA 2 cut(s) 162, 268
VpaK11BI GGWCC 1 cut(s) 25
XapI RAATTY 1 cut(s) 139
XspI CTAG 2 cut(s) 62, 165
ZraI GACGTC 1 cut(s) 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.