Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0009139

Physical Location & Seq

Genomic Coordinates Reverse (-)

7082208 .. 7083333

Gene Structure 1126 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g10410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGATGCGGAGGCAGCAGCAGCAGCAACAAGACCAGCAATCCAGGGTTTTCTACGAGCTGTCGGCTCTTGTTCTCAACCTCCTCCGATCTCCTCCCACGCCGATTCAATTCTCCGATAACTCCACGGTGGTGATGCCCCCGACTACGTCTGCGTCGTCGTTGAGGCGGCCGCCGGCGGCGTCGACGGCGCAGATCTCGCCGGCGGGATTCGCGTCGTTGATGCTGGGGATTTCGATGACTCTGATGCTGTGCGGAACGGTGACTTTCTTCATTGGGTTCATATTGATGCCGTGGGTGCTGGGATTGGTGATGGTGTTGTACGTGGCGGGGATCCTGTCGAGCCTCTCCGTCTTGGGGAAGTCGATTCTTTGCTACGCCTCCGCCCCGTCGACGCCGCGGAAGGACATTCCTGCATGGAAGCTGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

143

Amino Acids

15.46

Weight (kDa)

10.03

Isoelectric Point (pI)

68.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27290 AT1G27290
fragaria_vesca	FvH4_4g23540 FvH4_4g23540 FvH4_4g23540
malus_domestica	MD13G1121400.v1.1 MD16G1121700.v1.1
prunus_persica	Prupe.1G223700_v2.0.a1 Prupe.1G223700_v2.0.a1 Prupe.1G223700_v2.0.a1 Prupe.1G223700_v2.0.a1
pyrus_communis	pycom13g10580 pycom16g10410
rosa_chinensis	RchiOBHm_Chr4g0429941
rosa_laevigata	RLG00000007019
rosa_roxburghii	Rroxscaffold_5G00371770
rosa_rugosa	Rorug04G0239200 Rorug04G0239300 Rorug04G0239400
rosa_samantha	Rh4AG295900 Rh4DG299800
rosa_wichuraiana	Rw4G025630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	182, 389
AccII	CGCG	2 cut(s)	212, 397
AclWI	GGATC	2 cut(s)	325, 338
AcoI	YGGCCR	1 cut(s)	167
AcyI	GRCGYC	2 cut(s)	179, 392
AfaI	GTAC	1 cut(s)	320
AfiI	CCNNNNNNNGG	1 cut(s)	354
AgsI	TTSAA	1 cut(s)	107
AjnI	CCWGG	1 cut(s)	41
AleI	CACNNNNGTG	1 cut(s)	128
AluBI	AGCT	2 cut(s)	58, 421
AluI	AGCT	2 cut(s)	58, 421
AlwI	GGATC	2 cut(s)	325, 338
AoxI	GGCC	1 cut(s)	167
ApeKI	GCWGC	4 cut(s)	13, 16, 19, 22
AspLEI	GCGC	1 cut(s)	190
AsuHPI	GGTGA	3 cut(s)	142, 271, 319
BamHI	GGATCC	1 cut(s)	330
BbvI	GCAGC	4 cut(s)	25, 28, 31, 34
BccI	CCATC	1 cut(s)	304
BceAI	ACGGC	2 cut(s)	201, 274
BciT130I	CCWGG	1 cut(s)	43
BglII	AGATCT	1 cut(s)	192
BisI	GCNGC	8 cut(s)	14, 17, 20, 23, 167, 170, 177, 395
BlsI	GCNGC	8 cut(s)	15, 18, 21, 24, 168, 171, 178, 396
Bme1390I	CCNGG	1 cut(s)	43
BmiI	GGNNCC	1 cut(s)	332
BmrFI	CCNGG	1 cut(s)	43
BmsI	GCATC	4 cut(s)	123, 210, 234, 276
BsaAI	YACGTR	1 cut(s)	322
BsaHI	GRCGYC	2 cut(s)	179, 392
BsaJI	CCNNGG	4 cut(s)	42, 123, 290, 395
Bsc4I	CCNNNNNNNGG	1 cut(s)	354
Bse118I	RCCGGY	2 cut(s)	172, 199
BseBI	CCWGG	1 cut(s)	43
BseDI	CCNNGG	4 cut(s)	42, 123, 290, 395
BseLI	CCNNNNNNNGG	1 cut(s)	354
BseRI	GAGGAG	2 cut(s)	71, 81
BseX3I	CGGCCG	1 cut(s)	167
BseXI	GCAGC	4 cut(s)	25, 28, 31, 34
BseYI	CCCAGC	2 cut(s)	223, 298
Bsh1236I	CGCG	2 cut(s)	212, 397
Bsh1285I	CGRYCG	1 cut(s)	170
BshFI	GGCC	1 cut(s)	169
BsiEI	CGRYCG	1 cut(s)	170
BsiSI	CCGG	2 cut(s)	173, 200
BslI	CCNNNNNNNGG	1 cut(s)	354
BsnI	GGCC	1 cut(s)	169
Bsp143I	GATC	3 cut(s)	86, 192, 330
BspANI	GGCC	1 cut(s)	169
BspFNI	CGCG	2 cut(s)	212, 397
BspLI	GGNNCC	1 cut(s)	332
BspPI	GGATC	2 cut(s)	325, 338
BsrFI	RCCGGY	2 cut(s)	172, 199
BssAI	RCCGGY	2 cut(s)	172, 199
BssECI	CCNNGG	4 cut(s)	42, 123, 290, 395
BssMI	GATC	3 cut(s)	86, 192, 330
BssNI	GRCGYC	2 cut(s)	179, 392
Bst2UI	CCWGG	1 cut(s)	43
Bst4CI	ACNGT	2 cut(s)	127, 259
BstACI	GRCGYC	2 cut(s)	179, 392
BstBAI	YACGTR	1 cut(s)	322
BstC8I	GCNNGC	2 cut(s)	174, 201
BstDSI	CCRYGG	3 cut(s)	123, 290, 395
BstFNI	CGCG	2 cut(s)	212, 397
BstHHI	GCGC	1 cut(s)	190
BstKTI	GATC	3 cut(s)	89, 195, 333
BstMBI	GATC	3 cut(s)	86, 192, 330
BstMCI	CGRYCG	1 cut(s)	170
BstMWI	GCNNNNNNNGC	7 cut(s)	13, 19, 22, 185, 196, 209, 295
BstNI	CCWGG	1 cut(s)	43
BstSCI	CCNGG	1 cut(s)	41
BstUI	CGCG	2 cut(s)	212, 397
BstV1I	GCAGC	4 cut(s)	25, 28, 31, 34
BstX2I	RGATCY	2 cut(s)	192, 330
BstYI	RGATCY	2 cut(s)	192, 330
BstZI	CGGCCG	1 cut(s)	167
BsuRI	GGCC	1 cut(s)	169
BtgI	CCRYGG	3 cut(s)	123, 290, 395
Cac8I	GCNNGC	2 cut(s)	174, 201
CciNI	GCGGCCGC	1 cut(s)	167
CfoI	GCGC	1 cut(s)	190
Cfr10I	RCCGGY	2 cut(s)	172, 199
Cfr42I	CCGCGG	1 cut(s)	398
CseI	GACGC	4 cut(s)	141, 168, 201, 400
Csp6I	GTAC	1 cut(s)	319
CviAII	CATG	1 cut(s)	414
CviJI	RGCY	5 cut(s)	58, 65, 169, 342, 421
CviKI_1	RGCY	5 cut(s)	58, 65, 169, 342, 421
CviQI	GTAC	1 cut(s)	319
DpnI	GATC	3 cut(s)	88, 194, 332
DpnII	GATC	3 cut(s)	86, 192, 330
EaeI	YGGCCR	1 cut(s)	167
EagI	CGGCCG	1 cut(s)	167
EciI	GGCGGA	1 cut(s)	370
EclXI	CGGCCG	1 cut(s)	167
Eco52I	CGGCCG	1 cut(s)	167
EcoRII	CCWGG	1 cut(s)	41
FaeI	CATG	1 cut(s)	417
FaiI	YATR	2 cut(s)	281, 415
FatI	CATG	1 cut(s)	413
FauI	CCCGC	2 cut(s)	196, 319
FblI	GTMKAC	2 cut(s)	182, 389
Fnu4HI	GCNGC	8 cut(s)	14, 17, 20, 23, 167, 170, 177, 395
Fsp4HI	GCNGC	8 cut(s)	14, 17, 20, 23, 167, 170, 177, 395
GlaI	GCGC	1 cut(s)	189
GluI	GCNGC	8 cut(s)	14, 17, 20, 23, 167, 170, 177, 395
GsaI	CCCAGC	2 cut(s)	227, 302
HaeIII	GGCC	1 cut(s)	169
HapII	CCGG	2 cut(s)	173, 200
HgaI	GACGC	4 cut(s)	141, 168, 201, 400
HhaI	GCGC	1 cut(s)	190
Hin1I	GRCGYC	2 cut(s)	179, 392
Hin1II	CATG	1 cut(s)	417
Hin6I	GCGC	1 cut(s)	188
HinP1I	GCGC	1 cut(s)	188
HincII	GTYRAC	2 cut(s)	183, 390
HindII	GTYRAC	2 cut(s)	183, 390
HinfI	GANTC	4 cut(s)	103, 207, 238, 364
HpaII	CCGG	2 cut(s)	173, 200
HphI	GGTGA	3 cut(s)	142, 271, 319
Hpy166II	GTNNAC	2 cut(s)	183, 390
Hpy188I	TCNGA	3 cut(s)	86, 115, 243
Hpy8I	GTNNAC	2 cut(s)	183, 390
Hpy99I	CGWCG	7 cut(s)	157, 160, 184, 187, 217, 391, 394
HpyAV	CCTTC	1 cut(s)	394
HpyCH4III	ACNGT	2 cut(s)	127, 259
HpyCH4IV	ACGT	2 cut(s)	146, 321
HpyCH4V	TGCA	1 cut(s)	413
HpyF10VI	GCNNNNNNNGC	7 cut(s)	13, 19, 22, 185, 196, 209, 295
HpySE526I	ACGT	2 cut(s)	146, 321
Hsp92I	GRCGYC	2 cut(s)	179, 392
Hsp92II	CATG	1 cut(s)	417
HspAI	GCGC	1 cut(s)	188
KroI	GCCGGC	2 cut(s)	172, 199
KroNI	GCCGGC	2 cut(s)	174, 201
KspI	CCGCGG	1 cut(s)	398
Kzo9I	GATC	3 cut(s)	86, 192, 330
LpnPI	CCDG	9 cut(s)	28, 47, 55, 186, 209, 213, 284, 347, 423
Lsp1109I	GCAGC	4 cut(s)	25, 28, 31, 34
LweI	GCATC	4 cut(s)	123, 210, 234, 276
MaeII	ACGT	2 cut(s)	146, 321
MaeIII	GTNAC	1 cut(s)	259
MalI	GATC	3 cut(s)	88, 194, 332
MboI	GATC	3 cut(s)	86, 192, 330
MboII	GAAGA	1 cut(s)	259
MflI	RGATCY	2 cut(s)	192, 330
MluCI	AATT	1 cut(s)	107
MlyI	GAGTC	1 cut(s)	232
MnlI	CCTC	7 cut(s)	3, 89, 92, 102, 156, 353, 388
MreI	CGCCGGCG	2 cut(s)	172, 199
MroNI	GCCGGC	2 cut(s)	172, 199
MslI	CAYNNNNRTG	2 cut(s)	128, 284
MspA1I	CMGCKG	1 cut(s)	397
MspI	CCGG	2 cut(s)	173, 200
MspR9I	CCNGG	1 cut(s)	43
MvaI	CCWGG	1 cut(s)	43
MvnI	CGCG	2 cut(s)	212, 397
MwoI	GCNNNNNNNGC	7 cut(s)	13, 19, 22, 185, 196, 209, 295
NaeI	GCCGGC	2 cut(s)	174, 201
NdeII	GATC	3 cut(s)	86, 192, 330
NgoMIV	GCCGGC	2 cut(s)	172, 199
NlaIII	CATG	1 cut(s)	417
NlaIV	GGNNCC	1 cut(s)	332
NmuCI	GTSAC	1 cut(s)	259
NotI	GCGGCCGC	1 cut(s)	167
OliI	CACNNNNGTG	1 cut(s)	128
PcsI	WCGNNNNNNNCGW	1 cut(s)	152
PdiI	GCCGGC	2 cut(s)	174, 201
PfeI	GAWTC	3 cut(s)	103, 207, 364
PflFI	GACNNNGTC	1 cut(s)	145
PkrI	GCNGC	8 cut(s)	15, 18, 21, 24, 168, 171, 178, 396
PleI	GAGTC	1 cut(s)	232
PpsI	GAGTC	1 cut(s)	232
Ppu21I	YACGTR	1 cut(s)	322
Psp6I	CCWGG	1 cut(s)	41
PspFI	CCCAGC	2 cut(s)	223, 298
PspGI	CCWGG	1 cut(s)	41
PspN4I	GGNNCC	1 cut(s)	332
PsuI	RGATCY	2 cut(s)	192, 330
PsyI	GACNNNGTC	1 cut(s)	145
RsaI	GTAC	1 cut(s)	320
RsaNI	GTAC	1 cut(s)	319
RseI	CAYNNNNRTG	2 cut(s)	128, 284
SacII	CCGCGG	1 cut(s)	398
SalI	GTCGAC	2 cut(s)	181, 388
SatI	GCNGC	8 cut(s)	14, 17, 20, 23, 167, 170, 177, 395
Sau3AI	GATC	3 cut(s)	86, 192, 330
SchI	GAGTC	1 cut(s)	232
ScrFI	CCNGG	1 cut(s)	43
SetI	ASST	5 cut(s)	60, 81, 149, 324, 423
SfaNI	GCATC	4 cut(s)	123, 210, 234, 276
Sfr303I	CCGCGG	1 cut(s)	398
SgrAI	CRCCGGYG	2 cut(s)	172, 199
SgrBI	CCGCGG	1 cut(s)	398
SgrDI	CGTCGACG	2 cut(s)	181, 388
SmiMI	CAYNNNNRTG	2 cut(s)	128, 284
Sse9I	AATT	1 cut(s)	107
StyD4I	CCNGG	1 cut(s)	41
TaaI	ACNGT	2 cut(s)	127, 259
TaiI	ACGT	2 cut(s)	149, 324
TaqI	TCGA	5 cut(s)	182, 233, 338, 362, 389
TasI	AATT	1 cut(s)	107
TauI	GCSGC	4 cut(s)	169, 172, 179, 397
TfiI	GAWTC	3 cut(s)	103, 207, 364
TseFI	GTSAC	1 cut(s)	259
TseI	GCWGC	4 cut(s)	13, 16, 19, 22
Tsp45I	GTSAC	1 cut(s)	259
TspDTI	ATGAA	2 cut(s)	259, 268
TspGWI	ACGGA	1 cut(s)	337
Tth111I	GACNNNGTC	1 cut(s)	145
XmiI	GTMKAC	2 cut(s)	182, 389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.