Rorug04G0239400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0009139
Physical Location & Seq
Reverse (-)
40678936 .. 40681462
2527 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0239400.1

Sequence Viewer

Length: 1542 bp
ATGGCTGACAAGACCCTCCTACTAATCTTATGGATTCCATTTCTCCTCCTTCTCCCTTTACTACTGCTTTTACTGAGAAAGCAGATCAATAAGCCACAAAAGCACTTCCCACCAAGCCCTCCTAAGCTTCCCATTATAGGCAACCTCCACCAGTTTACTCAATCTGGTTCATCTCTTCATCAAAACCTATGGAGACTATCACAGAAATACGGACCACTCATGCTCTTACACATGGGTCGCAGACCGACCCTCATAATCTCATCAGCTGAAGCAGCAAAACAGACCTTGAAAGATAATGATCTCCACTGTTGCAGTAGACCGGCCTCCTCGGGATCTCGCAGACTCACATTTAACTATCTAGACATAGGATTTTCGCCTTACGGTGAATATTGGCGAGAGATAAGAAAGATATGTGTGCTTGAGATTTTCAGTGCGAAAAGGGTTCAGTCGTATAGGTCTATTAGAGAAGAAGAAGTCATGAAGATGATTGATTCAATCTCTGACGCATCAGCTTCATCTTCTCCTGTTAACCTTACTGAGAAGTTGTTTGCTCTCATGGGCAGTATAATTTTCAGGATTGTTTTCGGGACAAGTTTCCAAGGGAGCGATTTGGAGCATGAAAGATTTCTTCGAGTGCTTCATGATAGTGGAGATATGCTTACAGGCTTCTCATCATGCGCAGCTGATTTCTTTCCTCCATGTATCGGGTGGATCATGGACAGGATCTCCGGTAAACATAGAGAGTTTGACAGAGTTTCCAGGGAAGTTCATCGCTTTTTTCAGCAGGCGATTGATGATCATCTCAGGCCTGGGAGGACACAACAGGAGCATGAAGATATAGTTGATGTGCTGCTTAAAATGGTCAAGAAGCAAACTGGGATTGGAGCTGCTCAGCTTGGTCATAATAACATCAAGGCAGTTCTCTTGGATTTGTTTATAGGAGGAGTAGCCACCAGTGCAATTGCCATGGTTTGGGCAATGGCAGAGCTGGCTACGAATACAAGAGTGATGAAGAAAGCACAGGAAGAAATTAGAAACTGCATTGGAAATAAAGGAAAAGCCACTGAAATTGATACAGAGCAGCTGCACTACCTCAAGATGATAGTGAAAGAAACACTTCGACTACATCCACCAGGTCCCCTACTTCTTCCGAGAGAAACCATGTCCCACTTCAAAGTCCTCGGCTATGATGTTGACCCCAAAACAACAATCCTTGTTAATGATTGGGCAATCTCACGAGATCCAGAATTTTGGAACGACCCAGAAAAGTTCATTCCGGAAAGATTTGATGATAGGTCTGTTGATTTTAAAGGGCAACACTTTGACTTCTTGCCGTTTGGAGCTGGTCGAAGAATCTGTCCAGGGATTTATATGGCAGCGACGACAATGGAGCTTGCACTTGCCAAATTGTTGTGCTGCTTTGATTGGAAAGTGCCTGATGGAATGAATGAGGAAGATATCAAGATGGAAGAAACAACCCATGGGGTAACTATTTGCTTGAAAAATCCTCTCAACCTTGTCCCTATGAGATATTCCTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

513

Amino Acids

58.44

Weight (kDa)

8.39

Isoelectric Point (pI)

46.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 37 - 491 1.5e-102 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 679
AccB7I CCANNNNNTGG 1 cut(s) 972
AccI GTMKAC 1 cut(s) 316
AccIII TCCGGA 1 cut(s) 1276
AclWI GGATC 4 cut(s) 340, 719, 731, 1235
AcsI RAATTY 1 cut(s) 1247
AcuI CTGAAG 1 cut(s) 288
AfiI CCNNNNNNNGG 3 cut(s) 137, 704, 972
AgsI TTSAA 4 cut(s) 289, 495, 1174, 1501
AjnI CCWGG 4 cut(s) 758, 808, 1132, 1360
Alw26I GTCTC 1 cut(s) 187
AlwI GGATC 4 cut(s) 340, 719, 731, 1235
Ama87I CYCGRG 1 cut(s) 328
Aor13HI TCCGGA 1 cut(s) 1276
AoxI GGCC 2 cut(s) 321, 806
ApeKI GCWGC 8 cut(s) 272, 680, 850, 887, 1081, 1084, 1376, 1416
ApoI RAATTY 1 cut(s) 1247
ArsI GACNNNNNNTTYG 2 cut(s) 1342, 1374
Asp700I GAANNNNTTC 2 cut(s) 624, 1116
AspLEI GCGC 1 cut(s) 680
AspS9I GGNCC 2 cut(s) 212, 1136
AsuHPI GGTGA 1 cut(s) 395
AvaI CYCGRG 1 cut(s) 328
AvaII GGWCC 2 cut(s) 212, 1136
BauI CACGAG 1 cut(s) 1236
BbvI GCAGC 8 cut(s) 284, 692, 837, 874, 1071, 1093, 1388, 1403
BccI CCATC 2 cut(s) 1433, 1459
BceAI ACGGC 1 cut(s) 1318
BciT130I CCWGG 4 cut(s) 760, 810, 1134, 1362
BclI TGATCA 1 cut(s) 796
BcoDI GTCTC 1 cut(s) 187
BfaI CTAG 1 cut(s) 359
BisI GCNGC 8 cut(s) 273, 681, 851, 888, 1082, 1085, 1377, 1417
BlpI GCTNAGC 1 cut(s) 891
BlsI GCNGC 8 cut(s) 274, 682, 852, 889, 1083, 1086, 1378, 1418
Bme1390I CCNGG 4 cut(s) 760, 810, 1134, 1362
Bme18I GGWCC 2 cut(s) 212, 1136
BmeT110I CYCGRG 1 cut(s) 328
BmgT120I GGNCC 2 cut(s) 212, 1136
BmiI GGNNCC 1 cut(s) 1138
BmrFI CCNGG 4 cut(s) 760, 810, 1134, 1362
BmrI ACTGGG 1 cut(s) 885
BmsI GCATC 1 cut(s) 515
BmuI ACTGGG 1 cut(s) 885
Bpu10I CCTNAGC 1 cut(s) 123
Bpu1102I GCTNAGC 1 cut(s) 891
BpuEI CTTGAG 2 cut(s) 440, 1079
BsaBI GATNNNNATC 2 cut(s) 297, 798
BsaJI CCNNGG 8 cut(s) 327, 598, 759, 809, 966, 1180, 1361, 1480
BsaWI WCCGGW 2 cut(s) 728, 1276
BsaXI ACNNNNNCTCC 2 cut(s) 710, 740
Bsc4I CCNNNNNNNGG 3 cut(s) 137, 704, 972
Bse118I RCCGGY 1 cut(s) 319
Bse1I ACTGG 3 cut(s) 151, 880, 954
Bse3DI GCAATG 1 cut(s) 984
Bse8I GATNNNNATC 2 cut(s) 297, 798
BseAI TCCGGA 1 cut(s) 1276
BseBI CCWGG 4 cut(s) 760, 810, 1134, 1362
BseDI CCNNGG 8 cut(s) 327, 598, 759, 809, 966, 1180, 1361, 1480
BseGI GGATG 1 cut(s) 1126
BseJI GATNNNNATC 2 cut(s) 297, 798
BseLI CCNNNNNNNGG 3 cut(s) 137, 704, 972
BseMI GCAATG 1 cut(s) 984
BseMII CTCAG 4 cut(s) 65, 528, 817, 905
BseNI ACTGG 3 cut(s) 151, 880, 954
BseRI GAGGAG 3 cut(s) 35, 316, 957
BseXI GCAGC 8 cut(s) 284, 692, 837, 874, 1071, 1093, 1388, 1403
BsgI GTGCAG 1 cut(s) 1070
BshFI GGCC 2 cut(s) 323, 808
BsiHKCI CYCGRG 1 cut(s) 328
BsiSI CCGG 3 cut(s) 320, 729, 1277
BslFI GGGAC 4 cut(s) 601, 1122, 1150, 1505
BslI CCNNNNNNNGG 3 cut(s) 137, 704, 972
BsmAI GTCTC 1 cut(s) 187
BsmFI GGGAC 4 cut(s) 601, 1122, 1150, 1505
BsnI GGCC 2 cut(s) 323, 808
BsoBI CYCGRG 1 cut(s) 328
Bsp13I TCCGGA 1 cut(s) 1276
Bsp143I GATC 7 cut(s) 84, 298, 332, 711, 723, 796, 1240
Bsp1720I GCTNAGC 1 cut(s) 891
Bsp19I CCATGG 2 cut(s) 966, 1480
BspANI GGCC 2 cut(s) 323, 808
BspCNI CTCAG 4 cut(s) 66, 529, 816, 904
BspEI TCCGGA 1 cut(s) 1276
BspHI TCATGA 2 cut(s) 477, 640
BspLI GGNNCC 1 cut(s) 1138
BspPI GGATC 4 cut(s) 340, 719, 731, 1235
BsrDI GCAATG 1 cut(s) 984
BsrFI RCCGGY 1 cut(s) 319
BsrI ACTGG 3 cut(s) 151, 880, 954
BssAI RCCGGY 1 cut(s) 319
BssECI CCNNGG 8 cut(s) 327, 598, 759, 809, 966, 1180, 1361, 1480
BssMI GATC 7 cut(s) 84, 298, 332, 711, 723, 796, 1240
BssSI CACGAG 1 cut(s) 1236
BssT1I CCWWGG 3 cut(s) 598, 966, 1480
Bst2BI CACGAG 1 cut(s) 1236
Bst2UI CCWGG 4 cut(s) 760, 810, 1134, 1362
Bst4CI ACNGT 2 cut(s) 308, 383
Bst6I CTCTTC 1 cut(s) 180
BstC8I GCNNGC 3 cut(s) 786, 990, 1395
BstDEI CTNAG 5 cut(s) 74, 123, 537, 803, 891
BstDSI CCRYGG 2 cut(s) 966, 1480
BstF5I GGATG 1 cut(s) 1126
BstHHI GCGC 1 cut(s) 680
BstKTI GATC 7 cut(s) 87, 301, 335, 714, 726, 799, 1243
BstMAI GTCTC 1 cut(s) 187
BstMBI GATC 7 cut(s) 84, 298, 332, 711, 723, 796, 1240
BstMWI GCNNNNNNNGC 4 cut(s) 100, 272, 956, 989
BstNI CCWGG 4 cut(s) 760, 810, 1134, 1362
BstSCI CCNGG 4 cut(s) 758, 808, 1132, 1360
BstV1I GCAGC 8 cut(s) 284, 692, 837, 874, 1071, 1093, 1388, 1403
BstX2I RGATCY 3 cut(s) 332, 723, 1240
BstXI CCANNNNNNTGG 1 cut(s) 1251
BstYI RGATCY 3 cut(s) 332, 723, 1240
BsuRI GGCC 2 cut(s) 323, 808
BtgI CCRYGG 2 cut(s) 966, 1480
BtgZI GCGATG 1 cut(s) 755
BtsCI GGATG 1 cut(s) 1126
BtsIMutI CAGTG 4 cut(s) 304, 436, 961, 1062
Cac8I GCNNGC 3 cut(s) 786, 990, 1395
CciI TCATGA 2 cut(s) 477, 640
CfoI GCGC 1 cut(s) 680
Cfr10I RCCGGY 1 cut(s) 319
Cfr13I GGNCC 2 cut(s) 212, 1136
CseI GACGC 1 cut(s) 512
CsiI ACCWGGT 1 cut(s) 1132
CspCI CAANNNNNGTGG 2 cut(s) 1051, 1086
DdeI CTNAG 5 cut(s) 74, 123, 537, 803, 891
DpnI GATC 7 cut(s) 86, 300, 334, 713, 725, 798, 1242
DpnII GATC 7 cut(s) 84, 298, 332, 711, 723, 796, 1240
DraI TTTAAA 1 cut(s) 1309
Eam1104I CTCTTC 1 cut(s) 180
EarI CTCTTC 1 cut(s) 180
Eco130I CCWWGG 3 cut(s) 598, 966, 1480
Eco147I AGGCCT 1 cut(s) 808
Eco32I GATATC 1 cut(s) 1459
Eco47I GGWCC 2 cut(s) 212, 1136
Eco57I CTGAAG 1 cut(s) 288
Eco88I CYCGRG 1 cut(s) 328
EcoO109I RGGNCCY 1 cut(s) 1136
EcoRII CCWGG 4 cut(s) 758, 808, 1132, 1360
EcoRV GATATC 1 cut(s) 1459
EcoT14I CCWWGG 3 cut(s) 598, 966, 1480
ErhI CCWWGG 3 cut(s) 598, 966, 1480
FalI AAGNNNNNCTT 2 cut(s) 1101, 1133
FaqI GGGAC 4 cut(s) 601, 1122, 1150, 1505
FbaI TGATCA 1 cut(s) 796
FblI GTMKAC 1 cut(s) 316
Fnu4HI GCNGC 8 cut(s) 273, 681, 851, 888, 1082, 1085, 1377, 1417
FokI GGATG 1 cut(s) 1113
Fsp4HI GCNGC 8 cut(s) 273, 681, 851, 888, 1082, 1085, 1377, 1417
FspBI CTAG 1 cut(s) 359
FspI TGCGCA 1 cut(s) 679
GlaI GCGC 1 cut(s) 679
GluI GCNGC 8 cut(s) 273, 681, 851, 888, 1082, 1085, 1377, 1417
HaeIII GGCC 2 cut(s) 323, 808
HapII CCGG 3 cut(s) 320, 729, 1277
HgaI GACGC 1 cut(s) 512
HhaI GCGC 1 cut(s) 680
Hin6I GCGC 1 cut(s) 678
HinP1I GCGC 1 cut(s) 678
HincII GTYRAC 2 cut(s) 529, 1195
HindII GTYRAC 2 cut(s) 529, 1195
HindIII AAGCTT 1 cut(s) 125
HinfI GANTC 4 cut(s) 34, 342, 491, 1353
HpaI GTTAAC 1 cut(s) 529
HpaII CCGG 3 cut(s) 320, 729, 1277
HphI GGTGA 1 cut(s) 395
Hpy166II GTNNAC 5 cut(s) 156, 317, 529, 734, 1195
Hpy188I TCNGA 2 cut(s) 502, 1152
Hpy8I GTNNAC 5 cut(s) 156, 317, 529, 734, 1195
Hpy99I CGWCG 1 cut(s) 1384
HpyAV CCTTC 1 cut(s) 59
HpyCH4III ACNGT 2 cut(s) 308, 383
HpyCH4V TGCA 5 cut(s) 312, 959, 1041, 1087, 1397
HpyF10VI GCNNNNNNNGC 4 cut(s) 100, 272, 956, 989
HpyF3I CTNAG 5 cut(s) 74, 123, 537, 803, 891
HspAI GCGC 1 cut(s) 678
Kpn2I TCCGGA 1 cut(s) 1276
Ksp22I TGATCA 1 cut(s) 796
KspAI GTTAAC 1 cut(s) 529
Kzo9I GATC 7 cut(s) 84, 298, 332, 711, 723, 796, 1240
LmnI GCTCC 6 cut(s) 603, 613, 826, 884, 1340, 1390
Lsp1109I GCAGC 8 cut(s) 284, 692, 837, 874, 1071, 1093, 1388, 1403
LweI GCATC 1 cut(s) 515
MabI ACCWGGT 1 cut(s) 1132
MaeI CTAG 1 cut(s) 359
MaeIII GTNAC 1 cut(s) 1486
MalI GATC 7 cut(s) 86, 300, 334, 713, 725, 798, 1242
MboI GATC 7 cut(s) 84, 298, 332, 711, 723, 796, 1240
MfeI CAATTG 1 cut(s) 960
MflI RGATCY 3 cut(s) 332, 723, 1240
MluCI AATT 6 cut(s) 567, 960, 1029, 1068, 1247, 1406
MlyI GAGTC 1 cut(s) 336
MroI TCCGGA 1 cut(s) 1276
MroXI GAANNNNTTC 2 cut(s) 624, 1116
MseI TTAA 5 cut(s) 351, 528, 855, 1218, 1308
MslI CAYNNNNRTG 2 cut(s) 482, 645
MspA1I CMGCKG 3 cut(s) 266, 683, 1084
MspI CCGG 3 cut(s) 320, 729, 1277
MspR9I CCNGG 4 cut(s) 760, 810, 1134, 1362
MunI CAATTG 1 cut(s) 960
MvaI CCWGG 4 cut(s) 760, 810, 1134, 1362
MwoI GCNNNNNNNGC 4 cut(s) 100, 272, 956, 989
NcoI CCATGG 2 cut(s) 966, 1480
NdeII GATC 7 cut(s) 84, 298, 332, 711, 723, 796, 1240
NlaIV GGNNCC 1 cut(s) 1138
NmeAIII GCCGAG 1 cut(s) 1161
NsbI TGCGCA 1 cut(s) 679
PagI TCATGA 2 cut(s) 477, 640
PceI AGGCCT 1 cut(s) 808
PdmI GAANNNNTTC 2 cut(s) 624, 1116
PfeI GAWTC 3 cut(s) 34, 491, 1353
PflMI CCANNNNNTGG 1 cut(s) 972
PkrI GCNGC 8 cut(s) 274, 682, 852, 889, 1083, 1086, 1378, 1418
PleI GAGTC 1 cut(s) 336
PpsI GAGTC 1 cut(s) 336
PpuMI RGGWCCY 1 cut(s) 1136
Psp5II RGGWCCY 1 cut(s) 1136
Psp6I CCWGG 4 cut(s) 758, 808, 1132, 1360
PspGI CCWGG 4 cut(s) 758, 808, 1132, 1360
PspN4I GGNNCC 1 cut(s) 1138
PspPI GGNCC 2 cut(s) 212, 1136
PspPPI RGGWCCY 1 cut(s) 1136
PsuI RGATCY 3 cut(s) 332, 723, 1240
PvuII CAGCTG 3 cut(s) 266, 683, 1084
RseI CAYNNNNRTG 2 cut(s) 482, 645
SaqAI TTAA 5 cut(s) 351, 528, 855, 1218, 1308
SatI GCNGC 8 cut(s) 273, 681, 851, 888, 1082, 1085, 1377, 1417
Sau3AI GATC 7 cut(s) 84, 298, 332, 711, 723, 796, 1240
Sau96I GGNCC 2 cut(s) 212, 1136
SchI GAGTC 1 cut(s) 336
ScrFI CCNGG 4 cut(s) 760, 810, 1134, 1362
SexAI ACCWGGT 1 cut(s) 1132
SfaNI GCATC 1 cut(s) 515
SinI GGWCC 2 cut(s) 212, 1136
SmiMI CAYNNNNRTG 2 cut(s) 482, 645
SmlI CTYRAG 2 cut(s) 419, 1094
SmoI CTYRAG 2 cut(s) 419, 1094
Sse9I AATT 6 cut(s) 567, 960, 1029, 1068, 1247, 1406
SseBI AGGCCT 1 cut(s) 808
SspI AATATT 1 cut(s) 389
SspMI CTAG 1 cut(s) 359
StuI AGGCCT 1 cut(s) 808
StyD4I CCNGG 4 cut(s) 758, 808, 1132, 1360
StyI CCWWGG 3 cut(s) 598, 966, 1480
TaaI ACNGT 2 cut(s) 308, 383
TaqI TCGA 3 cut(s) 631, 1120, 1348
TaqII GACCGA 1 cut(s) 259
TasI AATT 6 cut(s) 567, 960, 1029, 1068, 1247, 1406
TfiI GAWTC 3 cut(s) 34, 491, 1353
Tru1I TTAA 5 cut(s) 351, 528, 855, 1218, 1308
Tru9I TTAA 5 cut(s) 351, 528, 855, 1218, 1308
TscAI CASTG 4 cut(s) 311, 436, 961, 1069
TseI GCWGC 8 cut(s) 272, 680, 850, 887, 1081, 1084, 1376, 1416
TspGWI ACGGA 1 cut(s) 225
TspRI CASTG 4 cut(s) 311, 436, 961, 1069
Van91I CCANNNNNTGG 1 cut(s) 972
VpaK11BI GGWCC 2 cut(s) 212, 1136
XapI RAATTY 1 cut(s) 1247
XbaI TCTAGA 1 cut(s) 358
XcmI CCANNNNNNNNNTGG 1 cut(s) 705
XmiI GTMKAC 1 cut(s) 316
XmnI GAANNNNTTC 2 cut(s) 624, 1116
XspI CTAG 1 cut(s) 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.