Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0009688

Physical Location & Seq

Genomic Coordinates Reverse (-)

3039362 .. 3040944

Gene Structure 1583 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1034300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGTTGCCTAATTCAACAGCCATTGCAGTGAAGGAGCTGAAAAGTATGAACCAAGGAGAGAAACAATTTCGTGCTGAAGTGGGAACTATCGGTCTTGATCGGTATAGTCGAAGTCTTGCCGGCACGATAGGTGACCTTCAAGTAGTTGGAGGAATCAAGAAGCTCAACAACAAAAACTGCAATACGTGGGCAACATGTATGGAATCTTACTTACAAGGTCAGGACCTTTGGGAGGTTGTCGGTGGTGGTGAGGTTACACAACCGGCGGCAGAAGATGCCAATGGCATCTTGCGAAAGTGGAAAATTAAAGCAGGCAAAGAGATGTTTGCTTTAAAGACCACAATTGAAGAAGAAATGTTGGAGTACATCCGGGATGCCAAAACGCCAAAGGAAACATGGGACACTTTTGTTACACTCTTTTCAAAGAATTTGTTTACTTGTAACCCGATAATCTTAGATTGGAAGGCTAGATATCACATTGCAGTAGGGACTGCCAGAGGATTGGCTTACCTCCATGACGAGTGCAGAGACTGCATAATACACTGTGATGTTAAGCCGGAGAACATCTTGTTGGATTCAGAATACAGTCCAAAATTGGCGGATTTTGGTCTTGCGAAACTCTTGGGGAGACACCACAGCCGGGTTTTGACAACCATGAGAGGAACTGTGGGGTATCTCGCACCAGAATGGTTTTCGGGTGAAGCCATCACGCCAAAAGCCGATGCCTTCTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

245

Amino Acids

27.24

Weight (kDa)

6.53

Isoelectric Point (pI)

30.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4219	PF13961	55 - 80	7.9e-10	Domain of unknown function (DUF4219)
PK_Tyr_Ser-Thr	PF07714	152 - 243	1.8e-11	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	157 - 243	4.9e-22	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009688)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g19322 FvH4_5g31431
malus_domestica	MD01G1222200.v1.1 MD14G1034300.v1.1
prunus_persica	Prupe.2G033500_v2.0.a1 Prupe.7G032100_v2.0.a1
pyrus_communis	pycom02g19670 pycom03g19000 pycom11g04720 pycom11g04870 pycom11g07640 pycom12g10550 pycom13g07730 pycom16g07450 pycom520g00380
rosa_chinensis	RchiOBHm_Chr3g0481931 RchiOBHm_Chr3g0481941 RchiOBHm_Chr5g0017901 RchiOBHm_Chr5g0017911
rosa_roxburghii	Rroxscaffold_1G00053310 Rroxscaffold_4G00308650
rosa_rugosa	Rorug07G0315400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	266, 599
AcsI	RAATTY	1 cut(s)	427
AcuI	CTGAAG	1 cut(s)	96
AfaI	GTAC	1 cut(s)	365
AfiI	CCNNNNNNNGG	2 cut(s)	232, 640
AflIII	ACRYGT	1 cut(s)	194
AgsI	TTSAA	4 cut(s)	15, 140, 347, 423
AjuI	GAANNNNNNNTTGG	2 cut(s)	554, 586
AluBI	AGCT	2 cut(s)	37, 163
AluI	AGCT	2 cut(s)	37, 163
Alw26I	GTCTC	2 cut(s)	522, 622
AlwNI	CAGNNNCTG	1 cut(s)	531
ApoI	RAATTY	1 cut(s)	427
AspS9I	GGNCC	1 cut(s)	223
AsuC2I	CCSGG	2 cut(s)	371, 641
AsuHPI	GGTGA	3 cut(s)	143, 260, 710
AvaII	GGWCC	1 cut(s)	223
BccI	CCATC	1 cut(s)	713
BcnI	CCSGG	2 cut(s)	371, 641
BcoDI	GTCTC	2 cut(s)	522, 622
BfaI	CTAG	1 cut(s)	468
BisI	GCNGC	1 cut(s)	267
BlsI	GCNGC	1 cut(s)	268
Bme1390I	CCNGG	2 cut(s)	371, 641
Bme18I	GGWCC	1 cut(s)	223
BmgT120I	GGNCC	1 cut(s)	223
BmrFI	CCNGG	2 cut(s)	371, 641
BmsI	GCATC	4 cut(s)	265, 294, 364, 712
BpuMI	CCSGG	2 cut(s)	371, 641
BsaAI	YACGTR	1 cut(s)	186
BsaJI	CCNNGG	1 cut(s)	52
Bsc4I	CCNNNNNNNGG	2 cut(s)	232, 640
Bse118I	RCCGGY	2 cut(s)	119, 262
Bse3DI	GCAATG	2 cut(s)	21, 477
BseDI	CCNNGG	1 cut(s)	52
BseGI	GGATG	2 cut(s)	366, 379
BseLI	CCNNNNNNNGG	2 cut(s)	232, 640
BseMI	GCAATG	2 cut(s)	21, 477
BsgI	GTGCAG	1 cut(s)	544
BsiSI	CCGG	5 cut(s)	120, 263, 370, 557, 640
BslFI	GGGAC	2 cut(s)	413, 502
BslI	CCNNNNNNNGG	2 cut(s)	232, 640
BsmAI	GTCTC	2 cut(s)	522, 622
BsmFI	GGGAC	2 cut(s)	413, 502
Bsp143I	GATC	1 cut(s)	97
BspACI	CCGC	2 cut(s)	266, 599
BsrDI	GCAATG	2 cut(s)	21, 477
BsrFI	RCCGGY	2 cut(s)	119, 262
BssAI	RCCGGY	2 cut(s)	119, 262
BssECI	CCNNGG	1 cut(s)	52
BssMI	GATC	1 cut(s)	97
BssT1I	CCWWGG	1 cut(s)	52
Bst4CI	ACNGT	3 cut(s)	545, 587, 667
BstAPI	GCANNNNNTGC	2 cut(s)	275, 531
BstBAI	YACGTR	1 cut(s)	186
BstC8I	GCNNGC	2 cut(s)	121, 313
BstDEI	CTNAG	1 cut(s)	454
BstEII	GGTNACC	1 cut(s)	131
BstENI	CCTNNNNNAGG	1 cut(s)	230
BstF5I	GGATG	2 cut(s)	366, 379
BstKTI	GATC	1 cut(s)	100
BstMAI	GTCTC	2 cut(s)	522, 622
BstMBI	GATC	1 cut(s)	97
BstMWI	GCNNNNNNNGC	2 cut(s)	275, 531
BstNSI	RCATGY	1 cut(s)	198
BstPI	GGTNACC	1 cut(s)	131
BstSCI	CCNGG	2 cut(s)	369, 639
BstXI	CCANNNNNNTGG	1 cut(s)	502
BtsCI	GGATG	2 cut(s)	366, 379
BtsI	GCAGTG	1 cut(s)	33
BtsIMutI	CAGTG	2 cut(s)	33, 541
Cac8I	GCNNGC	2 cut(s)	121, 313
CaiI	CAGNNNCTG	1 cut(s)	531
Cfr10I	RCCGGY	2 cut(s)	119, 262
Cfr13I	GGNCC	1 cut(s)	223
Csp6I	GTAC	1 cut(s)	364
CviAII	CATG	4 cut(s)	195, 396, 515, 655
CviJI	RGCY	9 cut(s)	20, 37, 163, 467, 506, 556, 639, 704, 719
CviKI_1	RGCY	9 cut(s)	20, 37, 163, 467, 506, 556, 639, 704, 719
CviQI	GTAC	1 cut(s)	364
DdeI	CTNAG	1 cut(s)	454
DpnI	GATC	1 cut(s)	99
DpnII	GATC	1 cut(s)	97
DraI	TTTAAA	1 cut(s)	333
EciI	GGCGGA	1 cut(s)	614
Eco130I	CCWWGG	1 cut(s)	52
Eco32I	GATATC	1 cut(s)	473
Eco47I	GGWCC	1 cut(s)	223
Eco57I	CTGAAG	1 cut(s)	96
Eco91I	GGTNACC	1 cut(s)	131
EcoNI	CCTNNNNNAGG	1 cut(s)	230
EcoO109I	RGGNCCY	1 cut(s)	223
EcoO65I	GGTNACC	1 cut(s)	131
EcoRV	GATATC	1 cut(s)	473
EcoT14I	CCWWGG	1 cut(s)	52
ErhI	CCWWGG	1 cut(s)	52
FaeI	CATG	4 cut(s)	198, 399, 518, 658
FaiI	YATR	8 cut(s)	47, 105, 196, 200, 397, 516, 536, 656
FaqI	GGGAC	2 cut(s)	413, 502
FatI	CATG	4 cut(s)	194, 395, 514, 654
Fnu4HI	GCNGC	1 cut(s)	267
FokI	GGATG	2 cut(s)	353, 386
Fsp4HI	GCNGC	1 cut(s)	267
FspBI	CTAG	1 cut(s)	468
GluI	GCNGC	1 cut(s)	267
HapII	CCGG	5 cut(s)	120, 263, 370, 557, 640
Hin1II	CATG	4 cut(s)	198, 399, 518, 658
HinfI	GANTC	3 cut(s)	153, 203, 575
HpaII	CCGG	5 cut(s)	120, 263, 370, 557, 640
HphI	GGTGA	3 cut(s)	143, 260, 710
Hpy166II	GTNNAC	1 cut(s)	435
Hpy188I	TCNGA	1 cut(s)	580
Hpy188III	TCNNGA	3 cut(s)	95, 157, 221
Hpy8I	GTNNAC	1 cut(s)	435
HpyAV	CCTTC	3 cut(s)	25, 146, 457
HpyCH4III	ACNGT	3 cut(s)	545, 587, 667
HpyCH4IV	ACGT	1 cut(s)	185
HpyCH4V	TGCA	5 cut(s)	26, 180, 482, 525, 534
HpyF10VI	GCNNNNNNNGC	2 cut(s)	275, 531
HpyF3I	CTNAG	1 cut(s)	454
HpySE526I	ACGT	1 cut(s)	185
Hsp92II	CATG	4 cut(s)	198, 399, 518, 658
KroI	GCCGGC	1 cut(s)	119
KroNI	GCCGGC	1 cut(s)	121
Kzo9I	GATC	1 cut(s)	97
LmnI	GCTCC	1 cut(s)	34
LpnPI	CCDG	9 cut(s)	133, 206, 276, 297, 383, 508, 570, 653, 696
LweI	GCATC	4 cut(s)	265, 294, 364, 712
MaeI	CTAG	1 cut(s)	468
MaeII	ACGT	1 cut(s)	185
MaeIII	GTNAC	4 cut(s)	131, 253, 409, 440
MalI	GATC	1 cut(s)	99
MboI	GATC	1 cut(s)	97
MboII	GAAGA	3 cut(s)	284, 359, 362
MfeI	CAATTG	1 cut(s)	342
MluCI	AATT	6 cut(s)	10, 65, 303, 342, 427, 593
MmeI	TCCRAC	3 cut(s)	127, 339, 552
MnlI	CCTC	6 cut(s)	143, 226, 244, 491, 521, 653
MroNI	GCCGGC	1 cut(s)	119
MseI	TTAA	3 cut(s)	306, 332, 552
MslI	CAYNNNNRTG	3 cut(s)	26, 546, 685
MspI	CCGG	5 cut(s)	120, 263, 370, 557, 640
MspR9I	CCNGG	2 cut(s)	371, 641
MunI	CAATTG	1 cut(s)	342
MwoI	GCNNNNNNNGC	2 cut(s)	275, 531
NaeI	GCCGGC	1 cut(s)	121
NciI	CCSGG	2 cut(s)	371, 641
NdeII	GATC	1 cut(s)	97
NgoMIV	GCCGGC	1 cut(s)	119
NlaIII	CATG	4 cut(s)	198, 399, 518, 658
NmuCI	GTSAC	1 cut(s)	131
NspI	RCATGY	1 cut(s)	198
PciI	ACATGT	1 cut(s)	194
PcsI	WCGNNNNNNNCGW	1 cut(s)	106
PdiI	GCCGGC	1 cut(s)	121
PfeI	GAWTC	3 cut(s)	153, 203, 575
PfoI	TCCNGGA	1 cut(s)	369
PkrI	GCNGC	1 cut(s)	268
Ppu21I	YACGTR	1 cut(s)	186
PpuMI	RGGWCCY	1 cut(s)	223
PscI	ACATGT	1 cut(s)	194
Psp5II	RGGWCCY	1 cut(s)	223
PspEI	GGTNACC	1 cut(s)	131
PspPI	GGNCC	1 cut(s)	223
PspPPI	RGGWCCY	1 cut(s)	223
PstNI	CAGNNNCTG	1 cut(s)	531
RsaI	GTAC	1 cut(s)	365
RsaNI	GTAC	1 cut(s)	364
RseI	CAYNNNNRTG	3 cut(s)	26, 546, 685
SaqAI	TTAA	3 cut(s)	306, 332, 552
SatI	GCNGC	1 cut(s)	267
Sau3AI	GATC	1 cut(s)	97
Sau96I	GGNCC	1 cut(s)	223
ScrFI	CCNGG	2 cut(s)	371, 641
SfaNI	GCATC	4 cut(s)	265, 294, 364, 712
SinI	GGWCC	1 cut(s)	223
SmiMI	CAYNNNNRTG	3 cut(s)	26, 546, 685
Sse9I	AATT	6 cut(s)	10, 65, 303, 342, 427, 593
SsiI	CCGC	2 cut(s)	266, 599
SspMI	CTAG	1 cut(s)	468
StyD4I	CCNGG	2 cut(s)	369, 639
StyI	CCWWGG	1 cut(s)	52
TaaI	ACNGT	3 cut(s)	545, 587, 667
TaiI	ACGT	1 cut(s)	188
TaqI	TCGA	1 cut(s)	109
TaqII	GACCGA	1 cut(s)	80
TasI	AATT	6 cut(s)	10, 65, 303, 342, 427, 593
TatI	WGTACW	1 cut(s)	363
TauI	GCSGC	1 cut(s)	269
TfiI	GAWTC	3 cut(s)	153, 203, 575
Tru1I	TTAA	3 cut(s)	306, 332, 552
Tru9I	TTAA	3 cut(s)	306, 332, 552
TscAI	CASTG	2 cut(s)	33, 548
TseFI	GTSAC	1 cut(s)	131
Tsp45I	GTSAC	1 cut(s)	131
TspDTI	ATGAA	1 cut(s)	62
TspRI	CASTG	2 cut(s)	33, 548
VpaK11BI	GGWCC	1 cut(s)	223
XagI	CCTNNNNNAGG	1 cut(s)	230
XapI	RAATTY	1 cut(s)	427
XceI	RCATGY	1 cut(s)	198
XcmI	CCANNNNNNNNNTGG	1 cut(s)	393
XspI	CTAG	1 cut(s)	468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.