pycom11g07640

lipid metabolic process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0009688
Physical Location & Seq
Reverse (-)
5872162 .. 5872872
711 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g07640.1

Sequence Viewer

Length: 609 bp
ATGGATGTGAAGAATGTTTTTCTTCATGGAGAGCTGGATCGGGAGATCTACATGATCCAACCAGTGGGATTTCAGAACCAAGATCATCCTGAATATGTGTGTAAACTGCGGAAAGCACTCTACGGATTGAAACAAGCACCCAGGGCGTGGTATGGTAAGATTGCTGAATTTCTAACACAAAGTGGTTATTCAGTAACACCTGCAGCTTCCAGCTTGTTTGTCAAAGCCAATGAAGGAAAGCTAGCTATTGTGCTAGTGTATGTGGATGACTTAATCATAACCGGTGATGATGAGGCAGAAATTCTTCAGACGAAGGAGAATTTATCAGTCCGTTTCCAGATGAAGGAACTTGGTCAACTCAAACATTTCCTTGGTTTAGAGGTTGATCGCACACAAGAAGGAATATTTCTCTGTCAACAGAAGTATTCCAAAGATTTATTGAAGAGGTTCGGAATGCTCGAATGCAAGCTGATCTCTACGCCGATGGAGCCAAATGTCAAAATGATTGGTGTGATGAGTCGGTACATGCAAAATCCAAAGAAGCCTCACTTGGAAGCAGTTCGACGAATACTGAGATATGTGAAGAGTACAATTGACTATGGTCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4219 RVT_2 Retrotran_gag_2 Retrotran_gag_3 gag_pre-integrs rve zf-CCHC

Protein Analysis

203

Amino Acids

23.25

Weight (kDa)

8.84

Isoelectric Point (pI)

29.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_2 PF07727 1 - 163 1.5e-48 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 208
Acc36I ACCTGC 1 cut(s) 208
AccB7I CCANNNNNTGG 2 cut(s) 64, 147
AciI CCGC 1 cut(s) 109
AclWI GGATC 2 cut(s) 45, 49
AcsI RAATTY 3 cut(s) 167, 300, 319
AcuI CTGAAG 1 cut(s) 290
AdeI CACNNNGTG 1 cut(s) 182
AfaI GTAC 2 cut(s) 524, 589
AfiI CCNNNNNNNGG 3 cut(s) 64, 147, 343
AgeI ACCGGT 1 cut(s) 281
AgsI TTSAA 2 cut(s) 130, 442
AjnI CCWGG 1 cut(s) 140
AjuI GAANNNNNNNTTGG 2 cut(s) 533, 565
AluBI AGCT 6 cut(s) 34, 206, 213, 241, 245, 469
AluI AGCT 6 cut(s) 34, 206, 213, 241, 245, 469
AlwI GGATC 2 cut(s) 45, 49
ApeKI GCWGC 1 cut(s) 203
ApoI RAATTY 3 cut(s) 167, 300, 319
AsiGI ACCGGT 1 cut(s) 281
Asp700I GAANNNNTTC 3 cut(s) 303, 446, 558
AsuHPI GGTGA 1 cut(s) 296
AsuNHI GCTAGC 1 cut(s) 241
BbvI GCAGC 1 cut(s) 215
BccI CCATC 1 cut(s) 478
BciT130I CCWGG 1 cut(s) 142
BfaI CTAG 2 cut(s) 242, 254
BfmI CTRYAG 1 cut(s) 201
BfuAI ACCTGC 1 cut(s) 208
BglII AGATCT 1 cut(s) 45
BisI GCNGC 1 cut(s) 204
BlsI GCNGC 1 cut(s) 205
Bme1390I CCNGG 1 cut(s) 142
BmiI GGNNCC 1 cut(s) 489
BmrFI CCNGG 1 cut(s) 142
BmtI GCTAGC 1 cut(s) 245
BoxI GACNNNNGTC 1 cut(s) 600
BsaJI CCNNGG 3 cut(s) 140, 141, 370
BsaWI WCCGGW 1 cut(s) 281
Bsc4I CCNNNNNNNGG 3 cut(s) 64, 147, 343
Bse118I RCCGGY 1 cut(s) 281
Bse1I ACTGG 1 cut(s) 62
BseBI CCWGG 1 cut(s) 142
BseDI CCNNGG 3 cut(s) 140, 141, 370
BseGI GGATG 3 cut(s) 10, 85, 271
BseLI CCNNNNNNNGG 3 cut(s) 64, 147, 343
BseMII CTCAG 1 cut(s) 563
BseNI ACTGG 1 cut(s) 62
BseXI GCAGC 1 cut(s) 215
BshTI ACCGGT 1 cut(s) 281
BsiSI CCGG 1 cut(s) 282
BslI CCNNNNNNNGG 3 cut(s) 64, 147, 343
BsmI GAATGC 2 cut(s) 459, 467
Bsp143I GATC 6 cut(s) 37, 45, 54, 82, 385, 471
BspACI CCGC 1 cut(s) 109
BspCNI CTCAG 1 cut(s) 564
BspLI GGNNCC 1 cut(s) 489
BspMAI CTGCAG 1 cut(s) 205
BspMI ACCTGC 1 cut(s) 208
BspOI GCTAGC 1 cut(s) 245
BspPI GGATC 2 cut(s) 45, 49
BsrFI RCCGGY 1 cut(s) 281
BsrI ACTGG 1 cut(s) 62
BssAI RCCGGY 1 cut(s) 281
BssECI CCNNGG 3 cut(s) 140, 141, 370
BssMI GATC 6 cut(s) 37, 45, 54, 82, 385, 471
BssT1I CCWWGG 1 cut(s) 370
Bst2UI CCWGG 1 cut(s) 142
Bst6I CTCTTC 2 cut(s) 437, 578
BstC8I GCNNGC 2 cut(s) 243, 467
BstDEI CTNAG 1 cut(s) 572
BstF5I GGATG 3 cut(s) 10, 85, 271
BstKTI GATC 6 cut(s) 40, 48, 57, 85, 388, 474
BstMBI GATC 6 cut(s) 37, 45, 54, 82, 385, 471
BstMWI GCNNNNNNNGC 2 cut(s) 143, 487
BstNI CCWGG 1 cut(s) 142
BstNSI RCATGY 1 cut(s) 529
BstPAI GACNNNNGTC 1 cut(s) 600
BstSCI CCNGG 1 cut(s) 140
BstSFI CTRYAG 1 cut(s) 201
BstV1I GCAGC 1 cut(s) 215
BstX2I RGATCY 1 cut(s) 45
BstYI RGATCY 1 cut(s) 45
BtsCI GGATG 3 cut(s) 10, 85, 271
BtsIMutI CAGTG 1 cut(s) 69
BveI ACCTGC 1 cut(s) 208
Cac8I GCNNGC 2 cut(s) 243, 467
Cfr10I RCCGGY 1 cut(s) 281
Csp6I GTAC 2 cut(s) 523, 588
CspAI ACCGGT 1 cut(s) 281
CviAII CATG 3 cut(s) 26, 52, 526
CviJI RGCY 9 cut(s) 34, 206, 213, 227, 241, 245, 469, 490, 544
CviKI_1 RGCY 9 cut(s) 34, 206, 213, 227, 241, 245, 469, 490, 544
CviQI GTAC 2 cut(s) 523, 588
DdeI CTNAG 1 cut(s) 572
DpnI GATC 6 cut(s) 39, 47, 56, 84, 387, 473
DpnII GATC 6 cut(s) 37, 45, 54, 82, 385, 471
DraIII CACNNNGTG 1 cut(s) 182
Eam1104I CTCTTC 2 cut(s) 437, 578
EarI CTCTTC 2 cut(s) 437, 578
Eco130I CCWWGG 1 cut(s) 370
Eco57I CTGAAG 1 cut(s) 290
EcoRII CCWGG 1 cut(s) 140
EcoT14I CCWWGG 1 cut(s) 370
ErhI CCWWGG 1 cut(s) 370
FaeI CATG 3 cut(s) 29, 55, 529
FaiI YATR 9 cut(s) 27, 53, 96, 153, 261, 278, 527, 579, 600
FalI AAGNNNNNCTT 2 cut(s) 533, 565
FatI CATG 3 cut(s) 25, 51, 525
Fnu4HI GCNGC 1 cut(s) 204
FokI GGATG 3 cut(s) 17, 72, 278
Fsp4HI GCNGC 1 cut(s) 204
FspBI CTAG 2 cut(s) 242, 254
GluI GCNGC 1 cut(s) 204
HapII CCGG 1 cut(s) 282
Hin1II CATG 3 cut(s) 29, 55, 529
HincII GTYRAC 2 cut(s) 356, 416
HindII GTYRAC 2 cut(s) 356, 416
HinfI GANTC 1 cut(s) 517
HpaII CCGG 1 cut(s) 282
HphI GGTGA 1 cut(s) 296
Hpy166II GTNNAC 3 cut(s) 104, 356, 416
Hpy188I TCNGA 3 cut(s) 75, 309, 452
Hpy188III TCNNGA 3 cut(s) 41, 89, 337
Hpy8I GTNNAC 3 cut(s) 104, 356, 416
Hpy99I CGWCG 1 cut(s) 567
HpyAV CCTTC 4 cut(s) 227, 307, 337, 392
HpyCH4V TGCA 3 cut(s) 203, 465, 529
HpyF10VI GCNNNNNNNGC 2 cut(s) 143, 487
HpyF3I CTNAG 1 cut(s) 572
Hsp92II CATG 3 cut(s) 29, 55, 529
Kzo9I GATC 6 cut(s) 37, 45, 54, 82, 385, 471
LmnI GCTCC 1 cut(s) 487
LpnPI CCDG 9 cut(s) 20, 75, 102, 127, 154, 213, 223, 295, 350
Lsp1109I GCAGC 1 cut(s) 215
MaeI CTAG 2 cut(s) 242, 254
MaeIII GTNAC 1 cut(s) 193
MalI GATC 6 cut(s) 39, 47, 56, 84, 387, 473
MboI GATC 6 cut(s) 37, 45, 54, 82, 385, 471
MboII GAAGA 5 cut(s) 14, 22, 296, 454, 595
MfeI CAATTG 1 cut(s) 591
MflI RGATCY 1 cut(s) 45
MluCI AATT 4 cut(s) 167, 300, 319, 591
MlyI GAGTC 1 cut(s) 526
MmeI TCCRAC 1 cut(s) 82
MnlI CCTC 4 cut(s) 286, 373, 438, 555
MroXI GAANNNNTTC 3 cut(s) 303, 446, 558
MseI TTAA 1 cut(s) 272
MspI CCGG 1 cut(s) 282
MspR9I CCNGG 1 cut(s) 142
MunI CAATTG 1 cut(s) 591
Mva1269I GAATGC 2 cut(s) 459, 467
MvaI CCWGG 1 cut(s) 142
MwoI GCNNNNNNNGC 2 cut(s) 143, 487
NdeII GATC 6 cut(s) 37, 45, 54, 82, 385, 471
NheI GCTAGC 1 cut(s) 241
NlaIII CATG 3 cut(s) 29, 55, 529
NlaIV GGNNCC 1 cut(s) 489
NspI RCATGY 1 cut(s) 529
PaqCI CACCTGC 1 cut(s) 208
PasI CCCWGGG 1 cut(s) 141
PcsI WCGNNNNNNNCGW 1 cut(s) 456
PctI GAATGC 2 cut(s) 459, 467
PdmI GAANNNNTTC 3 cut(s) 303, 446, 558
PflMI CCANNNNNTGG 2 cut(s) 64, 147
PinAI ACCGGT 1 cut(s) 281
PkrI GCNGC 1 cut(s) 205
PleI GAGTC 1 cut(s) 525
PpsI GAGTC 1 cut(s) 525
PshAI GACNNNNGTC 1 cut(s) 600
Psp6I CCWGG 1 cut(s) 140
PspGI CCWGG 1 cut(s) 140
PspN4I GGNNCC 1 cut(s) 489
PstI CTGCAG 1 cut(s) 205
PsuI RGATCY 1 cut(s) 45
RsaI GTAC 2 cut(s) 524, 589
RsaNI GTAC 2 cut(s) 523, 588
SaqAI TTAA 1 cut(s) 272
SatI GCNGC 1 cut(s) 204
Sau3AI GATC 6 cut(s) 37, 45, 54, 82, 385, 471
SchI GAGTC 1 cut(s) 526
ScrFI CCNGG 1 cut(s) 142
SetI ASST 9 cut(s) 36, 202, 208, 215, 243, 247, 384, 449, 471
SfcI CTRYAG 1 cut(s) 201
Sse9I AATT 4 cut(s) 167, 300, 319, 591
SsiI CCGC 1 cut(s) 109
SspI AATATT 1 cut(s) 405
SspMI CTAG 2 cut(s) 242, 254
StyD4I CCNGG 1 cut(s) 140
StyI CCWWGG 1 cut(s) 370
TaqI TCGA 2 cut(s) 459, 562
TasI AATT 4 cut(s) 167, 300, 319, 591
TatI WGTACW 1 cut(s) 587
Tru1I TTAA 1 cut(s) 272
Tru9I TTAA 1 cut(s) 272
TscAI CASTG 1 cut(s) 69
TseI GCWGC 1 cut(s) 203
TspDTI ATGAA 3 cut(s) 14, 246, 356
TspGWI ACGGA 2 cut(s) 138, 320
TspRI CASTG 1 cut(s) 69
Van91I CCANNNNNTGG 2 cut(s) 64, 147
XapI RAATTY 3 cut(s) 167, 300, 319
XceI RCATGY 1 cut(s) 529
XmnI GAANNNNTTC 3 cut(s) 303, 446, 558
XspI CTAG 2 cut(s) 242, 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.