gag-polypeptide of LTR copia-type
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_5g19322 FvH4_5g31431 |
| malus_domestica | MD01G1222200.v1.1 MD14G1034300.v1.1 |
| prunus_persica | Prupe.2G033500_v2.0.a1 Prupe.7G032100_v2.0.a1 |
| pyrus_communis | pycom02g19670 pycom03g19000 pycom11g04720 pycom11g04870 pycom11g07640 pycom12g10550 pycom13g07730 pycom16g07450 pycom520g00380 |
| rosa_chinensis | RchiOBHm_Chr3g0481931 RchiOBHm_Chr3g0481941 RchiOBHm_Chr5g0017901 RchiOBHm_Chr5g0017911 |
| rosa_roxburghii | Rroxscaffold_1G00053310 Rroxscaffold_4G00308650 |
| rosa_rugosa | Rorug07G0315400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcvI | CACGTG | 1 cut(s) | 60 |
| AflIII | ACRYGT | 2 cut(s) | 57, 68 |
| AgsI | TTSAA | 2 cut(s) | 14, 218 |
| AluBI | AGCT | 2 cut(s) | 37, 191 |
| AluI | AGCT | 2 cut(s) | 37, 191 |
| Alw21I | GWGCWC | 1 cut(s) | 237 |
| AsuHPI | GGTGA | 2 cut(s) | 17, 104 |
| BbrPI | CACGTG | 1 cut(s) | 60 |
| Bbv12I | GWGCWC | 1 cut(s) | 237 |
| BglII | AGATCT | 1 cut(s) | 97 |
| BsaAI | YACGTR | 1 cut(s) | 60 |
| Bse1I | ACTGG | 1 cut(s) | 173 |
| BseGI | GGATG | 1 cut(s) | 112 |
| BseNI | ACTGG | 1 cut(s) | 173 |
| BsiHKAI | GWGCWC | 1 cut(s) | 237 |
| Bsp1286I | GDGCHC | 1 cut(s) | 237 |
| Bsp143I | GATC | 2 cut(s) | 7, 97 |
| BsrI | ACTGG | 1 cut(s) | 173 |
| BssMI | GATC | 2 cut(s) | 7, 97 |
| BstBAI | YACGTR | 1 cut(s) | 60 |
| BstF5I | GGATG | 1 cut(s) | 112 |
| BstKTI | GATC | 2 cut(s) | 10, 100 |
| BstMBI | GATC | 2 cut(s) | 7, 97 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 188, 197 |
| BstNSI | RCATGY | 1 cut(s) | 72 |
| BstX2I | RGATCY | 1 cut(s) | 97 |
| BstYI | RGATCY | 1 cut(s) | 97 |
| BtsCI | GGATG | 1 cut(s) | 112 |
| CviAII | CATG | 2 cut(s) | 69, 267 |
| CviJI | RGCY | 3 cut(s) | 37, 136, 191 |
| CviKI_1 | RGCY | 3 cut(s) | 37, 136, 191 |
| DpnI | GATC | 2 cut(s) | 9, 99 |
| DpnII | GATC | 2 cut(s) | 7, 97 |
| Eco72I | CACGTG | 1 cut(s) | 60 |
| FaeI | CATG | 2 cut(s) | 72, 270 |
| FaiI | YATR | 5 cut(s) | 70, 74, 194, 239, 268 |
| FatI | CATG | 2 cut(s) | 68, 266 |
| FokI | GGATG | 1 cut(s) | 119 |
| Hin1II | CATG | 2 cut(s) | 72, 270 |
| HindIII | AAGCTT | 1 cut(s) | 35 |
| HinfI | GANTC | 1 cut(s) | 77 |
| HphI | GGTGA | 2 cut(s) | 17, 104 |
| Hpy188III | TCNNGA | 1 cut(s) | 31 |
| HpyCH4IV | ACGT | 1 cut(s) | 59 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 188, 197 |
| HpySE526I | ACGT | 1 cut(s) | 59 |
| Hsp92II | CATG | 2 cut(s) | 72, 270 |
| Kzo9I | GATC | 2 cut(s) | 7, 97 |
| LmnI | GCTCC | 1 cut(s) | 232 |
| LpnPI | CCDG | 1 cut(s) | 154 |
| MaeII | ACGT | 1 cut(s) | 59 |
| MaeIII | GTNAC | 2 cut(s) | 127, 164 |
| MalI | GATC | 2 cut(s) | 9, 99 |
| MboI | GATC | 2 cut(s) | 7, 97 |
| MboII | GAAGA | 4 cut(s) | 107, 184, 230, 233 |
| MfeI | CAATTG | 1 cut(s) | 213 |
| MflI | RGATCY | 1 cut(s) | 97 |
| MhlI | GDGCHC | 1 cut(s) | 237 |
| MluCI | AATT | 2 cut(s) | 49, 213 |
| MlyI | GAGTC | 1 cut(s) | 86 |
| MmeI | TCCRAC | 1 cut(s) | 210 |
| MnlI | CCTC | 1 cut(s) | 136 |
| MseI | TTAA | 2 cut(s) | 39, 177 |
| MunI | CAATTG | 1 cut(s) | 213 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 188, 197 |
| NdeII | GATC | 2 cut(s) | 7, 97 |
| NlaIII | CATG | 2 cut(s) | 72, 270 |
| NspI | RCATGY | 1 cut(s) | 72 |
| PciI | ACATGT | 1 cut(s) | 68 |
| PleI | GAGTC | 1 cut(s) | 85 |
| PmaCI | CACGTG | 1 cut(s) | 60 |
| PmlI | CACGTG | 1 cut(s) | 60 |
| PpsI | GAGTC | 1 cut(s) | 85 |
| Ppu21I | YACGTR | 1 cut(s) | 60 |
| PscI | ACATGT | 1 cut(s) | 68 |
| PspCI | CACGTG | 1 cut(s) | 60 |
| PsuI | RGATCY | 1 cut(s) | 97 |
| SaqAI | TTAA | 2 cut(s) | 39, 177 |
| Sau3AI | GATC | 2 cut(s) | 7, 97 |
| SchI | GAGTC | 1 cut(s) | 86 |
| SduI | GDGCHC | 1 cut(s) | 237 |
| SetI | ASST | 4 cut(s) | 39, 62, 94, 193 |
| SgeI | CNNG | 8 cut(s) | 26, 43, 70, 72, 81, 101, 181, 195 |
| Sse9I | AATT | 2 cut(s) | 49, 213 |
| TaiI | ACGT | 1 cut(s) | 62 |
| TasI | AATT | 2 cut(s) | 49, 213 |
| Tru1I | TTAA | 2 cut(s) | 39, 177 |
| Tru9I | TTAA | 2 cut(s) | 39, 177 |
| TspDTI | ATGAA | 1 cut(s) | 138 |
| XceI | RCATGY | 1 cut(s) | 72 |