Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0009688

Physical Location & Seq

Genomic Coordinates Reverse (-)

31873211 .. 31879837

Gene Structure 6627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0315400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1743 bp

ATGTTTCACACTCTCAGATTGAGCACCAGGTCCTCCCTCACACGACTAATCGCCGCCGCCGCCGGCACAAGCGCCACCGCAACCACCAGAATCCCCGTATCCGGAAGAGTTGCTGTCGCTGCTAGTTGTGGTGGTGCAGAAGCAGCACAACCCCAGCAGCAGCGGCGGCGGCACAAGTGCAGCGAAGTCGGAGGAGGAGGAGGAGAGTACGAGAACATAAGGGCGGACGTGAACTGTCCCCGATGCTCGAAGCAAATGGCGGTCCTGTTCTCGACCCGACCGCTGTCGATTACGGGCCGAGAGACGGGGGTTTACCAGGCCGTGAATCTGTGCCCCAATTGCAACACCGCCTTCTATTTCAGGCCATCCAAGCTCCTCCCTTTGCAAGGCACTTTCGTCGAGATTGGTAGGCTTAAGGCGCCGCCCACTCATCATTCCACTTCCCATTCCGATTCCGGTTCCGGCCAGAAAGACCTCTTGACTCCCAAGGAGATACGTAAGGCTCTTGATGACTTTGTTATCGGCCAAGAAAGAGCCAAAAAGGTGCTTTCGGTTGCGGTTTATAACCACTACAAAAGAATACGGCATTCTTCCCAACAGAGAAGGTCTGGTGTAGATTCAGTTGATTGTAAACCTCACAGTGTTGATACTGATTCTGTTGAGTTGGAGAAGAGCAATGTATTATTAATGGGTCCCACTGGTTCAGGGAAGACTTTACTTGCAAAAACACTAGCCCGTGTTGTGAATGTTCCGTTTGCCATTGCTGATGCAACAACATTAACACAGGCAAGTTATGTTGGAGAAGATGTGGAATCAATATTGTATAGACTTCTTACGGAAGCTGAGTTTGATGTGGAAGCAGCTCAGAAAGGGATTGTCTACATTGATGAAGTTGATAAGATAATAAAGAAGGCTGAGGGCTTAAATATTGGCCGAGATGTGTCTGGAGAGGGCGTCCAACAGGCATTGCTGAAAATGTTGGAAGGAACCGTAGTTAATGTTCCTGATAAAGGAGCTCGGAAGCATCCTCGTGGTGATAGTATACAGATGGATACAAAGGATATCCTTTTCATATGTGGTGGGGCTTTTGTTGGTTTGGAGAAGACTATTTCAGAAAGACACCAAGATTCTTCCATTGGATTTGGAGCACCAGTTCGTGCAAACATGAGGTCCAGTGGATTGACCGACGCCATAGTGACATCATCCTTGTTGGAATCTGTAGAAAGTGGAGATCTTATTGCTTATGGCCTGATACCTGAATTTGTTGGGCGCTTTCCTATTTTAGTGAGTTTGTCATCTTTAAACGAGGATCAACTTGTTCAGGTCCTCACAGAACCTAAAAATGCTCTTGGTAAACAGTACAAGATGATGTTTGACATGAACAATGTCAAATTACATTTTACTGACGATGCACTGAGATTGATTGCAAGGAAGGCAATGGCAAAGAACACCGGTGCTCGAGGTTTGAGAGCCATATTGGAGAATATTCTTACAGAAGCAATGTTCGAGGTTCCAGACATCAAGACAGAAACCAATAGTATACATGCAGTTCTGGTTGATGAAGATGCTGTTGGGTCAGTGGATGCTCCAGGACAAGGAGCAAAAATTCTTAGTGGTGAAGGCATAGTGGAGCAATTTCTTCATGAAACAAAGTCGAGAGAGCACATGGGAAAGCAGGGGCCTGCTGAAGGCGAATGTTCGCAAGAAGTTTTGGAGCTTCAATCAAGAGCCTTTGGTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

580

Amino Acids

62.69

Weight (kDa)

6.93

Isoelectric Point (pI)

38.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_2	PF07724	223 - 427	2.6e-29	AAA domain (Cdc48 subfamily)
AAA	PF00004	227 - 332	3.6e-14	ATPase family associated with various cellular activities (AAA)
ClpB_D2-small	PF10431	434 - 503	2e-10	C-terminal, D2-small domain, of ClpB protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009688)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g19322 FvH4_5g31431
malus_domestica	MD01G1222200.v1.1 MD14G1034300.v1.1
prunus_persica	Prupe.2G033500_v2.0.a1 Prupe.7G032100_v2.0.a1
pyrus_communis	pycom02g19670 pycom03g19000 pycom11g04720 pycom11g04870 pycom11g07640 pycom12g10550 pycom13g07730 pycom16g07450 pycom520g00380
rosa_chinensis	RchiOBHm_Chr3g0481931 RchiOBHm_Chr3g0481941 RchiOBHm_Chr5g0017901 RchiOBHm_Chr5g0017911
rosa_roxburghii	Rroxscaffold_1G00053310 Rroxscaffold_4G00308650
rosa_rugosa	Rorug07G0315400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	564
AccB1I	GGYRCC	1 cut(s)	418
AccI	GTMKAC	3 cut(s)	879, 1042, 1540
AccIII	TCCGGA	1 cut(s)	101
AclWI	GGATC	1 cut(s)	1317
AcoI	YGGCCR	3 cut(s)	463, 523, 931
AcsI	RAATTY	2 cut(s)	1259, 1605
AcuI	CTGAAG	1 cut(s)	1707
AcyI	GRCGYC	3 cut(s)	419, 954, 1188
AfaI	GTAC	2 cut(s)	209, 1361
AfiI	CCNNNNNNNGG	6 cut(s)	101, 304, 386, 1010, 1595, 1688
AflII	CTTAAG	1 cut(s)	413
AgeI	ACCGGT	1 cut(s)	1451
AgsI	TTSAA	1 cut(s)	1721
AjiI	CACGTC	1 cut(s)	229
AjnI	CCWGG	3 cut(s)	26, 315, 1588
AjuI	GAANNNNNNNTTGG	2 cut(s)	1554, 1586
AloI	GAACNNNNNNTCC	2 cut(s)	1137, 1169
AluBI	AGCT	5 cut(s)	373, 842, 863, 1016, 1717
AluI	AGCT	5 cut(s)	373, 842, 863, 1016, 1717
Alw21I	GWGCWC	5 cut(s)	26, 1018, 1150, 1459, 1665
Alw26I	GTCTC	1 cut(s)	296
AlwI	GGATC	1 cut(s)	1317
Ama87I	CYCGRG	1 cut(s)	1458
Aor13HI	TCCGGA	1 cut(s)	101
AoxI	GGCC	8 cut(s)	295, 318, 362, 463, 523, 931, 1246, 1679
ApeKI	GCWGC	6 cut(s)	119, 143, 157, 160, 180, 860
ApoI	RAATTY	2 cut(s)	1259, 1605
ArsI	GACNNNNNNTTYG	2 cut(s)	1154, 1186
AseI	ATTAAT	1 cut(s)	686
AsiGI	ACCGGT	1 cut(s)	1451
AspLEI	GCGC	3 cut(s)	74, 421, 1272
AspS9I	GGNCC	7 cut(s)	30, 262, 295, 692, 1170, 1324, 1679
AsuHPI	GGTGA	2 cut(s)	1046, 1628
AvaI	CYCGRG	1 cut(s)	1458
AvaII	GGWCC	5 cut(s)	30, 262, 692, 1170, 1324
BaeGI	GKGCMC	1 cut(s)	335
BanI	GGYRCC	1 cut(s)	418
BanII	GRGCYC	1 cut(s)	1018
BauI	CACGAG	1 cut(s)	1029
BbsI	GAAGAC	2 cut(s)	716, 1109
Bbv12I	GWGCWC	5 cut(s)	26, 1018, 1150, 1459, 1665
BbvCI	CCTCAGC	1 cut(s)	915
BbvI	GCAGC	6 cut(s)	106, 155, 169, 172, 192, 872
BccI	CCATC	2 cut(s)	373, 1042
BceAI	ACGGC	2 cut(s)	305, 599
BcgI	CGANNNNNNTGC	4 cut(s)	169, 203, 379, 413
BciT130I	CCWGG	3 cut(s)	28, 317, 1590
BciVI	GTATCC	2 cut(s)	109, 1045
BcoDI	GTCTC	1 cut(s)	296
BfaI	CTAG	2 cut(s)	123, 731
BfmI	CTRYAG	1 cut(s)	1218
BfoI	RGCGCY	3 cut(s)	75, 422, 1273
BfrI	CTTAAG	1 cut(s)	413
BfuI	GTATCC	2 cut(s)	109, 1045
BglII	AGATCT	1 cut(s)	1231
Bme1390I	CCNGG	3 cut(s)	28, 317, 1590
Bme18I	GGWCC	5 cut(s)	30, 262, 692, 1170, 1324
BmeT110I	CYCGRG	1 cut(s)	1458
BmgBI	CACGTC	1 cut(s)	229
BmgT120I	GGNCC	7 cut(s)	30, 262, 295, 692, 1170, 1324, 1679
BmiI	GGNNCC	7 cut(s)	420, 460, 693, 694, 988, 1512, 1680
BmrFI	CCNGG	3 cut(s)	28, 317, 1590
BmsI	GCATC	6 cut(s)	233, 757, 1033, 1399, 1555, 1573
BoxI	GACNNNNGTC	1 cut(s)	283
BpiI	GAAGAC	2 cut(s)	716, 1109
BpmI	CTGGAG	2 cut(s)	966, 1572
Bpu10I	CCTNAGC	1 cut(s)	915
BsaAI	YACGTR	1 cut(s)	497
BsaHI	GRCGYC	3 cut(s)	419, 954, 1188
BsaJI	CCNNGG	1 cut(s)	486
BsaWI	WCCGGW	3 cut(s)	101, 455, 1451
BsaXI	ACNNNNNCTCC	6 cut(s)	792, 822, 939, 969, 1137, 1167
Bsc4I	CCNNNNNNNGG	6 cut(s)	101, 304, 386, 1010, 1595, 1688
Bse118I	RCCGGY	2 cut(s)	62, 1451
Bse1I	ACTGG	3 cut(s)	703, 1151, 1173
Bse3DI	GCAATG	5 cut(s)	682, 759, 965, 1443, 1506
BseAI	TCCGGA	1 cut(s)	101
BseBI	CCWGG	3 cut(s)	28, 317, 1590
BseDI	CCNNGG	1 cut(s)	486
BseGI	GGATG	4 cut(s)	365, 1024, 1202, 1588
BseLI	CCNNNNNNNGG	6 cut(s)	101, 304, 386, 1010, 1595, 1688
BseMI	GCAATG	5 cut(s)	682, 759, 965, 1443, 1506
BseMII	CTCAG	5 cut(s)	28, 834, 878, 906, 1406
BseNI	ACTGG	3 cut(s)	703, 1151, 1173
BseRI	GAGGAG	5 cut(s)	207, 210, 213, 216, 365
BseSI	GKGCMC	1 cut(s)	335
BseXI	GCAGC	6 cut(s)	106, 155, 169, 172, 192, 872
BseYI	CCCAGC	1 cut(s)	153
BsgI	GTGCAG	2 cut(s)	156, 199
Bsh1285I	CGRYCG	1 cut(s)	281
BshFI	GGCC	8 cut(s)	297, 320, 364, 465, 525, 933, 1248, 1681
BshNI	GGYRCC	1 cut(s)	418
BshTI	ACCGGT	1 cut(s)	1451
BsiEI	CGRYCG	1 cut(s)	281
BsiHKAI	GWGCWC	5 cut(s)	26, 1018, 1150, 1459, 1665
BsiHKCI	CYCGRG	1 cut(s)	1458
BsiSI	CCGG	5 cut(s)	63, 102, 456, 462, 1452
BslFI	GGGAC	2 cut(s)	222, 678
BslI	CCNNNNNNNGG	6 cut(s)	101, 304, 386, 1010, 1595, 1688
BsmAI	GTCTC	1 cut(s)	296
BsmBI	CGTCTC	1 cut(s)	296
BsmFI	GGGAC	2 cut(s)	222, 678
BsmI	GAATGC	1 cut(s)	586
BsnI	GGCC	8 cut(s)	297, 320, 364, 465, 525, 933, 1248, 1681
BsoBI	CYCGRG	1 cut(s)	1458
Bsp1286I	GDGCHC	6 cut(s)	26, 335, 1018, 1150, 1459, 1665
Bsp13I	TCCGGA	1 cut(s)	101
Bsp143I	GATC	2 cut(s)	1231, 1309
BspANI	GGCC	8 cut(s)	297, 320, 364, 465, 525, 933, 1248, 1681
BspCNI	CTCAG	5 cut(s)	27, 835, 877, 907, 1407
BspEI	TCCGGA	1 cut(s)	101
BspHI	TCATGA	1 cut(s)	1642
BspLI	GGNNCC	7 cut(s)	420, 460, 693, 694, 988, 1512, 1680
BspPI	GGATC	1 cut(s)	1317
BspQI	GCTCTTC	1 cut(s)	665
BspT107I	GGYRCC	1 cut(s)	418
BspTI	CTTAAG	1 cut(s)	413
BsrDI	GCAATG	5 cut(s)	682, 759, 965, 1443, 1506
BsrFI	RCCGGY	2 cut(s)	62, 1451
BsrI	ACTGG	3 cut(s)	703, 1151, 1173
BssAI	RCCGGY	2 cut(s)	62, 1451
BssECI	CCNNGG	1 cut(s)	486
BssMI	GATC	2 cut(s)	1231, 1309
BssNAI	GTATAC	2 cut(s)	1043, 1541
BssNI	GRCGYC	3 cut(s)	419, 954, 1188
BssSI	CACGAG	1 cut(s)	1029
BssT1I	CCWWGG	1 cut(s)	486
Bst1107I	GTATAC	2 cut(s)	1043, 1541
Bst2BI	CACGAG	1 cut(s)	1029
Bst2UI	CCWGG	3 cut(s)	28, 317, 1590
Bst4CI	ACNGT	4 cut(s)	236, 641, 991, 1359
Bst6I	CTCTTC	2 cut(s)	100, 665
BstACI	GRCGYC	3 cut(s)	419, 954, 1188
BstAFI	CTTAAG	1 cut(s)	413
BstBAI	YACGTR	1 cut(s)	497
BstC8I	GCNNGC	2 cut(s)	64, 1683
BstDEI	CTNAG	6 cut(s)	14, 843, 864, 915, 1415, 1610
BstENI	CCTNNNNNAGG	3 cut(s)	384, 1008, 1686
BstF5I	GGATG	4 cut(s)	365, 1024, 1202, 1588
BstH2I	RGCGCY	3 cut(s)	75, 422, 1273
BstHHI	GCGC	3 cut(s)	74, 421, 1272
BstKTI	GATC	2 cut(s)	1234, 1312
BstMAI	GTCTC	1 cut(s)	296
BstMBI	GATC	2 cut(s)	1231, 1309
BstMCI	CGRYCG	1 cut(s)	281
BstNI	CCWGG	3 cut(s)	28, 317, 1590
BstNSI	RCATGY	1 cut(s)	1547
BstPAI	GACNNNNGTC	1 cut(s)	283
BstSCI	CCNGG	3 cut(s)	26, 315, 1588
BstSFI	CTRYAG	1 cut(s)	1218
BstSLI	GKGCMC	1 cut(s)	335
BstSNI	TACGTA	1 cut(s)	497
BstV1I	GCAGC	6 cut(s)	106, 155, 169, 172, 192, 872
BstV2I	GAAGAC	2 cut(s)	716, 1109
BstX2I	RGATCY	1 cut(s)	1231
BstYI	RGATCY	1 cut(s)	1231
BstZ17I	GTATAC	2 cut(s)	1043, 1541
BsuI	GTATCC	2 cut(s)	109, 1045
BsuRI	GGCC	8 cut(s)	297, 320, 364, 465, 525, 933, 1248, 1681
BtrI	CACGTC	1 cut(s)	229
BtsCI	GGATG	4 cut(s)	365, 1024, 1202, 1588
BtsIMutI	CAGTG	5 cut(s)	646, 696, 1180, 1412, 1584
Cac8I	GCNNGC	2 cut(s)	64, 1683
CciI	TCATGA	1 cut(s)	1642
CfoI	GCGC	3 cut(s)	74, 421, 1272
Cfr10I	RCCGGY	2 cut(s)	62, 1451
Cfr13I	GGNCC	7 cut(s)	30, 262, 295, 692, 1170, 1324, 1679
CseI	GACGC	2 cut(s)	943, 1196
CsiI	ACCWGGT	1 cut(s)	26
Csp6I	GTAC	2 cut(s)	208, 1360
CspAI	ACCGGT	1 cut(s)	1451
CviAII	CATG	5 cut(s)	1165, 1378, 1544, 1643, 1666
CviQI	GTAC	2 cut(s)	208, 1360
DdeI	CTNAG	6 cut(s)	14, 843, 864, 915, 1415, 1610
DinI	GGCGCC	1 cut(s)	420
DpnI	GATC	2 cut(s)	1233, 1311
DpnII	GATC	2 cut(s)	1231, 1309
DraI	TTTAAA	1 cut(s)	1302
EaeI	YGGCCR	3 cut(s)	463, 523, 931
Eam1104I	CTCTTC	2 cut(s)	100, 665
EarI	CTCTTC	2 cut(s)	100, 665
EciI	GGCGGA	1 cut(s)	239
Ecl136II	GAGCTC	1 cut(s)	1016
Eco105I	TACGTA	1 cut(s)	497
Eco130I	CCWWGG	1 cut(s)	486
Eco24I	GRGCYC	1 cut(s)	1018
Eco32I	GATATC	1 cut(s)	1063
Eco47I	GGWCC	5 cut(s)	30, 262, 692, 1170, 1324
Eco53kI	GAGCTC	1 cut(s)	1016
Eco57I	CTGAAG	1 cut(s)	1707
Eco88I	CYCGRG	1 cut(s)	1458
EcoICRI	GAGCTC	1 cut(s)	1016
EcoNI	CCTNNNNNAGG	3 cut(s)	384, 1008, 1686
EcoO109I	RGGNCCY	4 cut(s)	30, 692, 1324, 1679
EcoRII	CCWGG	3 cut(s)	26, 315, 1588
EcoRV	GATATC	1 cut(s)	1063
EcoT14I	CCWWGG	1 cut(s)	486
EcoT38I	GRGCYC	1 cut(s)	1018
EgeI	GGCGCC	1 cut(s)	420
EheI	GGCGCC	1 cut(s)	420
ErhI	CCWWGG	1 cut(s)	486
Esp3I	CGTCTC	1 cut(s)	296
FaeI	CATG	5 cut(s)	1168, 1381, 1547, 1646, 1669
FaqI	GGGAC	2 cut(s)	222, 678
FatI	CATG	5 cut(s)	1164, 1377, 1543, 1642, 1665
FauNDI	CATATG	1 cut(s)	1073
FblI	GTMKAC	3 cut(s)	879, 1042, 1540
FokI	GGATG	4 cut(s)	352, 1011, 1189, 1595
FriOI	GRGCYC	1 cut(s)	1018
FspBI	CTAG	2 cut(s)	123, 731
GlaI	GCGC	3 cut(s)	73, 420, 1271
GsaI	CCCAGC	1 cut(s)	157
GsuI	CTGGAG	2 cut(s)	966, 1572
HaeII	RGCGCY	3 cut(s)	75, 422, 1273
HaeIII	GGCC	8 cut(s)	297, 320, 364, 465, 525, 933, 1248, 1681
HapII	CCGG	5 cut(s)	63, 102, 456, 462, 1452
HgaI	GACGC	2 cut(s)	943, 1196
HhaI	GCGC	3 cut(s)	74, 421, 1272
Hin1I	GRCGYC	3 cut(s)	419, 954, 1188
Hin1II	CATG	5 cut(s)	1168, 1381, 1547, 1646, 1669
Hin6I	GCGC	3 cut(s)	72, 419, 1270
HinP1I	GCGC	3 cut(s)	72, 419, 1270
HinfI	GANTC	9 cut(s)	90, 325, 452, 481, 617, 653, 812, 1127, 1214
HpaII	CCGG	5 cut(s)	63, 102, 456, 462, 1452
HphI	GGTGA	2 cut(s)	1046, 1628
Hpy166II	GTNNAC	7 cut(s)	232, 313, 632, 880, 1043, 1355, 1541
Hpy188I	TCNGA	6 cut(s)	17, 191, 451, 867, 1020, 1114
Hpy8I	GTNNAC	7 cut(s)	232, 313, 632, 880, 1043, 1355, 1541
Hpy99I	CGWCG	2 cut(s)	401, 1190
HpyAV	CCTTC	7 cut(s)	361, 597, 904, 977, 1426, 1613, 1682
HpyCH4III	ACNGT	4 cut(s)	236, 641, 991, 1359
HpyCH4IV	ACGT	2 cut(s)	228, 496
HpyF3I	CTNAG	6 cut(s)	14, 843, 864, 915, 1415, 1610
HpySE526I	ACGT	2 cut(s)	228, 496
Hsp92I	GRCGYC	3 cut(s)	419, 954, 1188
Hsp92II	CATG	5 cut(s)	1168, 1381, 1547, 1646, 1669
HspAI	GCGC	3 cut(s)	72, 419, 1270
KasI	GGCGCC	1 cut(s)	418
KflI	GGGWCCC	1 cut(s)	692
Kpn2I	TCCGGA	1 cut(s)	101
KroI	GCCGGC	1 cut(s)	62
KroNI	GCCGGC	1 cut(s)	64
Kzo9I	GATC	2 cut(s)	1231, 1309
LguI	GCTCTTC	1 cut(s)	665
LmnI	GCTCC	7 cut(s)	378, 1013, 1145, 1591, 1598, 1630, 1714
Lsp1109I	GCAGC	6 cut(s)	106, 155, 169, 172, 192, 872
LweI	GCATC	6 cut(s)	233, 757, 1033, 1399, 1555, 1573
MabI	ACCWGGT	1 cut(s)	26
MaeI	CTAG	2 cut(s)	123, 731
MaeII	ACGT	2 cut(s)	228, 496
MaeIII	GTNAC	1 cut(s)	1195
MalI	GATC	2 cut(s)	1233, 1311
MboI	GATC	2 cut(s)	1231, 1309
MboII	GAAGA	9 cut(s)	117, 582, 682, 721, 815, 1114, 1122, 1574, 1631
MfeI	CAATTG	1 cut(s)	337
MflI	RGATCY	1 cut(s)	1231
MhlI	GDGCHC	6 cut(s)	26, 335, 1018, 1150, 1459, 1665
MluCI	AATT	5 cut(s)	337, 1259, 1391, 1605, 1634
Mly113I	GGCGCC	1 cut(s)	419
MlyI	GAGTC	1 cut(s)	475
MmeI	TCCRAC	6 cut(s)	169, 645, 778, 960, 982, 1191
MroI	TCCGGA	1 cut(s)	101
MroNI	GCCGGC	1 cut(s)	62
MseI	TTAA	6 cut(s)	414, 686, 779, 923, 996, 1301
MslI	CAYNNNNRTG	1 cut(s)	1029
MspA1I	CMGCKG	2 cut(s)	163, 283
MspCI	CTTAAG	1 cut(s)	413
MspI	CCGG	5 cut(s)	63, 102, 456, 462, 1452
MspR9I	CCNGG	3 cut(s)	28, 317, 1590
MunI	CAATTG	1 cut(s)	337
Mva1269I	GAATGC	1 cut(s)	586
MvaI	CCWGG	3 cut(s)	28, 317, 1590
NaeI	GCCGGC	1 cut(s)	64
NarI	GGCGCC	1 cut(s)	419
NdeI	CATATG	1 cut(s)	1073
NdeII	GATC	2 cut(s)	1231, 1309
NgoMIV	GCCGGC	1 cut(s)	62
NlaIII	CATG	5 cut(s)	1168, 1381, 1547, 1646, 1669
NlaIV	GGNNCC	7 cut(s)	420, 460, 693, 694, 988, 1512, 1680
NmeAIII	GCCGAG	2 cut(s)	323, 959
NmuCI	GTSAC	1 cut(s)	1195
NspI	RCATGY	1 cut(s)	1547
PaeR7I	CTCGAG	1 cut(s)	1458
PagI	TCATGA	1 cut(s)	1642
PciSI	GCTCTTC	1 cut(s)	665
PctI	GAATGC	1 cut(s)	586
PdiI	GCCGGC	1 cut(s)	64
PfeI	GAWTC	8 cut(s)	90, 325, 452, 617, 653, 812, 1127, 1214
PfoI	TCCNGGA	1 cut(s)	1588
PinAI	ACCGGT	1 cut(s)	1451
PleI	GAGTC	1 cut(s)	475
PluTI	GGCGCC	1 cut(s)	422
PpsI	GAGTC	1 cut(s)	475
Ppu21I	YACGTR	1 cut(s)	497
PpuMI	RGGWCCY	3 cut(s)	30, 692, 1324
PshAI	GACNNNNGTC	1 cut(s)	283
PshBI	ATTAAT	1 cut(s)	686
PsiI	TTATAA	1 cut(s)	564
Psp124BI	GAGCTC	1 cut(s)	1018
Psp5II	RGGWCCY	3 cut(s)	30, 692, 1324
Psp6I	CCWGG	3 cut(s)	26, 315, 1588
PspFI	CCCAGC	1 cut(s)	153
PspGI	CCWGG	3 cut(s)	26, 315, 1588
PspN4I	GGNNCC	7 cut(s)	420, 460, 693, 694, 988, 1512, 1680
PspPI	GGNCC	7 cut(s)	30, 262, 295, 692, 1170, 1324, 1679
PspPPI	RGGWCCY	3 cut(s)	30, 692, 1324
PspXI	VCTCGAGB	1 cut(s)	1458
PsrI	GAACNNNNNNTAC	2 cut(s)	984, 1016
PsuI	RGATCY	1 cut(s)	1231
RsaI	GTAC	2 cut(s)	209, 1361
RsaNI	GTAC	2 cut(s)	208, 1360
RseI	CAYNNNNRTG	1 cut(s)	1029
SacI	GAGCTC	1 cut(s)	1018
SapI	GCTCTTC	1 cut(s)	665
SaqAI	TTAA	6 cut(s)	414, 686, 779, 923, 996, 1301
Sau3AI	GATC	2 cut(s)	1231, 1309
Sau96I	GGNCC	7 cut(s)	30, 262, 295, 692, 1170, 1324, 1679
SchI	GAGTC	1 cut(s)	475
ScrFI	CCNGG	3 cut(s)	28, 317, 1590
SduI	GDGCHC	6 cut(s)	26, 335, 1018, 1150, 1459, 1665
SexAI	ACCWGGT	1 cut(s)	26
SfaNI	GCATC	6 cut(s)	233, 757, 1033, 1399, 1555, 1573
SfcI	CTRYAG	1 cut(s)	1218
SfoI	GGCGCC	1 cut(s)	420
Sfr274I	CTCGAG	1 cut(s)	1458
SgrAI	CRCCGGYG	1 cut(s)	1451
SinI	GGWCC	5 cut(s)	30, 262, 692, 1170, 1324
SlaI	CTCGAG	1 cut(s)	1458
SmiMI	CAYNNNNRTG	1 cut(s)	1029
SmlI	CTYRAG	2 cut(s)	413, 1458
SmoI	CTYRAG	2 cut(s)	413, 1458
SnaBI	TACGTA	1 cut(s)	497
Sse9I	AATT	5 cut(s)	337, 1259, 1391, 1605, 1634
SspDI	GGCGCC	1 cut(s)	418
SspI	AATATT	3 cut(s)	819, 928, 1486
SspMI	CTAG	2 cut(s)	123, 731
SstI	GAGCTC	1 cut(s)	1018
StyD4I	CCNGG	3 cut(s)	26, 315, 1588
StyI	CCWWGG	1 cut(s)	486
TaaI	ACNGT	4 cut(s)	236, 641, 991, 1359
TaiI	ACGT	2 cut(s)	231, 499
TaqI	TCGA	7 cut(s)	248, 272, 287, 399, 1459, 1506, 1655
TaqII	GACCGA	1 cut(s)	1199
TasI	AATT	5 cut(s)	337, 1259, 1391, 1605, 1634
TatI	WGTACW	1 cut(s)	1359
TauI	GCSGC	7 cut(s)	56, 59, 62, 166, 169, 172, 424
TfiI	GAWTC	8 cut(s)	90, 325, 452, 617, 653, 812, 1127, 1214
Tru1I	TTAA	6 cut(s)	414, 686, 779, 923, 996, 1301
Tru9I	TTAA	6 cut(s)	414, 686, 779, 923, 996, 1301
TscAI	CASTG	5 cut(s)	646, 703, 1180, 1419, 1584
TseFI	GTSAC	1 cut(s)	1195
TseI	GCWGC	6 cut(s)	119, 143, 157, 160, 180, 860
Tsp45I	GTSAC	1 cut(s)	1195
TspDTI	ATGAA	6 cut(s)	903, 1060, 1394, 1575, 1631, 1659
TspGWI	ACGGA	2 cut(s)	741, 851
TspRI	CASTG	5 cut(s)	646, 703, 1180, 1419, 1584
Vha464I	CTTAAG	1 cut(s)	413
VpaK11BI	GGWCC	5 cut(s)	30, 262, 692, 1170, 1324
VspI	ATTAAT	1 cut(s)	686
XagI	CCTNNNNNAGG	3 cut(s)	384, 1008, 1686
XapI	RAATTY	2 cut(s)	1259, 1605
XceI	RCATGY	1 cut(s)	1547
XhoI	CTCGAG	1 cut(s)	1458
XmiI	GTMKAC	3 cut(s)	879, 1042, 1540
XspI	CTAG	2 cut(s)	123, 731

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.