Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0009688

Physical Location & Seq

Genomic Coordinates Forward (+)

17610243 .. 17611043

Gene Structure 801 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g19670.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGGGGAGCAAATTGTTCGAATCCAGTCGAAACCAGATGAGTCTGAGGATTCACTTAATGGTGATGATGTTGAGCAAGCAGTGCCCCAAAACCCTTGGCAAGCTGACATATATCAACAACCAGAAGAAGATAGACCTAGTGAAGTGGAAGTATTAACTCCACAATCACAACTAAGGAGGTCAACAAGAATCAGGAAGCAAAATCCTAAATACGCCAACGCATCCATAGAAAAAGAAACAGTTGAACCTGAGTGCTTCAAAGTTGGGAGAAGAGGTCACTGTAGCAAAGCTAAATCAAGCTTGGAATCCAGTGCCAAAGCGAAGAGATGTGAAACCCATATCATGCAAATGGGTATGCAAGAAAAAGCTTCGTCGTCAACCCGGCATGAAGAGAAGAATGAGATGGTGTTGAGGGGGAGTGTTAAAGAAATCAACCCCATCTCATTAAAGGACCTACACAAATCTAGAATAAAGAATTCTAGAACATTCACTAAGGCAAGATTAGTCAAGCAAGCAATCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

175

Amino Acids

19.87

Weight (kDa)

9.26

Isoelectric Point (pI)

67.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009688)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g19322 FvH4_5g31431
malus_domestica	MD01G1222200.v1.1 MD14G1034300.v1.1
prunus_persica	Prupe.2G033500_v2.0.a1 Prupe.7G032100_v2.0.a1
pyrus_communis	pycom02g19670 pycom03g19000 pycom11g04720 pycom11g04870 pycom11g07640 pycom12g10550 pycom13g07730 pycom16g07450 pycom520g00380
rosa_chinensis	RchiOBHm_Chr3g0481931 RchiOBHm_Chr3g0481941 RchiOBHm_Chr5g0017901 RchiOBHm_Chr5g0017911
rosa_roxburghii	Rroxscaffold_1G00053310 Rroxscaffold_4G00308650
rosa_rugosa	Rorug07G0315400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	475
AgsI	TTSAA	2 cut(s)	245, 259
AluBI	AGCT	4 cut(s)	104, 290, 300, 368
AluI	AGCT	4 cut(s)	104, 290, 300, 368
ApoI	RAATTY	1 cut(s)	475
AspS9I	GGNCC	1 cut(s)	451
AsuC2I	CCSGG	1 cut(s)	382
AsuHPI	GGTGA	1 cut(s)	74
AsuII	TTCGAA	1 cut(s)	19
AvaII	GGWCC	1 cut(s)	451
BaeGI	GKGCMC	1 cut(s)	87
BccI	CCATC	2 cut(s)	397, 446
BcgI	CGANNNNNNTGC	1 cut(s)	33
BcnI	CCSGG	1 cut(s)	382
BfaI	CTAG	3 cut(s)	138, 465, 480
BfmI	CTRYAG	1 cut(s)	280
Bme1390I	CCNGG	1 cut(s)	382
Bme18I	GGWCC	1 cut(s)	451
BmgT120I	GGNCC	1 cut(s)	451
BmrFI	CCNGG	1 cut(s)	382
BmsI	GCATC	1 cut(s)	230
Bpu14I	TTCGAA	1 cut(s)	19
BpuMI	CCSGG	1 cut(s)	382
BsaJI	CCNNGG	1 cut(s)	95
BsaXI	ACNNNNNCTCC	2 cut(s)	259, 289
Bse1I	ACTGG	2 cut(s)	25, 309
BseDI	CCNNGG	1 cut(s)	95
BseGI	GGATG	1 cut(s)	221
BseMII	CTCAG	2 cut(s)	36, 240
BseNI	ACTGG	2 cut(s)	25, 309
BseSI	GKGCMC	1 cut(s)	87
BsiSI	CCGG	1 cut(s)	382
Bsp119I	TTCGAA	1 cut(s)	19
Bsp1286I	GDGCHC	1 cut(s)	87
BspCNI	CTCAG	2 cut(s)	37, 241
BspT104I	TTCGAA	1 cut(s)	19
BsrI	ACTGG	2 cut(s)	25, 309
BssECI	CCNNGG	1 cut(s)	95
BssT1I	CCWWGG	1 cut(s)	95
Bst4CI	ACNGT	2 cut(s)	241, 281
Bst6I	CTCTTC	3 cut(s)	265, 317, 384
BstAPI	GCANNNNNTGC	1 cut(s)	82
BstBI	TTCGAA	1 cut(s)	19
BstC8I	GCNNGC	3 cut(s)	78, 102, 513
BstDEI	CTNAG	4 cut(s)	45, 173, 249, 492
BstF5I	GGATG	1 cut(s)	221
BstMWI	GCNNNNNNNGC	1 cut(s)	82
BstSCI	CCNGG	1 cut(s)	380
BstSFI	CTRYAG	1 cut(s)	280
BstSLI	GKGCMC	1 cut(s)	87
BtsCI	GGATG	1 cut(s)	221
BtsI	GCAGTG	1 cut(s)	87
BtsIMutI	CAGTG	3 cut(s)	87, 277, 316
Cac8I	GCNNGC	3 cut(s)	78, 102, 513
Cfr13I	GGNCC	1 cut(s)	451
CviAII	CATG	2 cut(s)	343, 386
CviJI	RGCY	4 cut(s)	104, 290, 300, 368
CviKI_1	RGCY	4 cut(s)	104, 290, 300, 368
DdeI	CTNAG	4 cut(s)	45, 173, 249, 492
Eam1104I	CTCTTC	3 cut(s)	265, 317, 384
EarI	CTCTTC	3 cut(s)	265, 317, 384
Eco130I	CCWWGG	1 cut(s)	95
Eco47I	GGWCC	1 cut(s)	451
EcoO109I	RGGNCCY	1 cut(s)	451
EcoRI	GAATTC	1 cut(s)	475
EcoT14I	CCWWGG	1 cut(s)	95
ErhI	CCWWGG	1 cut(s)	95
FaeI	CATG	2 cut(s)	346, 389
FaiI	YATR	7 cut(s)	110, 112, 227, 339, 344, 356, 387
FatI	CATG	2 cut(s)	342, 385
FokI	GGATG	1 cut(s)	208
FspBI	CTAG	3 cut(s)	138, 465, 480
HapII	CCGG	1 cut(s)	382
Hin1II	CATG	2 cut(s)	346, 389
HincII	GTYRAC	2 cut(s)	183, 378
HindII	GTYRAC	2 cut(s)	183, 378
HindIII	AAGCTT	2 cut(s)	298, 366
HinfI	GANTC	5 cut(s)	21, 41, 50, 189, 305
HpaII	CCGG	1 cut(s)	382
HphI	GGTGA	1 cut(s)	74
Hpy166II	GTNNAC	2 cut(s)	183, 378
Hpy188I	TCNGA	1 cut(s)	46
Hpy188III	TCNNGA	3 cut(s)	193, 465, 480
Hpy8I	GTNNAC	2 cut(s)	183, 378
Hpy99I	CGWCG	1 cut(s)	376
HpyCH4III	ACNGT	2 cut(s)	241, 281
HpyCH4V	TGCA	2 cut(s)	346, 358
HpyF10VI	GCNNNNNNNGC	1 cut(s)	82
HpyF3I	CTNAG	4 cut(s)	45, 173, 249, 492
Hsp92II	CATG	2 cut(s)	346, 389
LmnI	GCTCC	1 cut(s)	7
LpnPI	CCDG	7 cut(s)	38, 48, 135, 178, 261, 322, 395
LweI	GCATC	1 cut(s)	230
MaeI	CTAG	3 cut(s)	138, 465, 480
MaeIII	GTNAC	1 cut(s)	275
MboII	GAAGA	6 cut(s)	137, 140, 282, 334, 401, 406
MhlI	GDGCHC	1 cut(s)	87
MluCI	AATT	2 cut(s)	12, 475
MlyI	GAGTC	1 cut(s)	50
MnlI	CCTC	4 cut(s)	40, 171, 266, 405
MseI	TTAA	4 cut(s)	57, 155, 423, 446
MslI	CAYNNNNRTG	1 cut(s)	347
MspI	CCGG	1 cut(s)	382
MspR9I	CCNGG	1 cut(s)	382
MwoI	GCNNNNNNNGC	1 cut(s)	82
NciI	CCSGG	1 cut(s)	382
NlaIII	CATG	2 cut(s)	346, 389
NmuCI	GTSAC	1 cut(s)	275
NspV	TTCGAA	1 cut(s)	19
PfeI	GAWTC	4 cut(s)	21, 50, 189, 305
PleI	GAGTC	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	49
PpuMI	RGGWCCY	1 cut(s)	451
Psp5II	RGGWCCY	1 cut(s)	451
PspPI	GGNCC	1 cut(s)	451
PspPPI	RGGWCCY	1 cut(s)	451
RseI	CAYNNNNRTG	1 cut(s)	347
SaqAI	TTAA	4 cut(s)	57, 155, 423, 446
Sau96I	GGNCC	1 cut(s)	451
SchI	GAGTC	1 cut(s)	50
ScrFI	CCNGG	1 cut(s)	382
SduI	GDGCHC	1 cut(s)	87
SetI	ASST	9 cut(s)	106, 139, 182, 250, 277, 292, 302, 370, 456
SfaNI	GCATC	1 cut(s)	230
SfcI	CTRYAG	1 cut(s)	280
SfuI	TTCGAA	1 cut(s)	19
SinI	GGWCC	1 cut(s)	451
SmiMI	CAYNNNNRTG	1 cut(s)	347
Sse9I	AATT	2 cut(s)	12, 475
SspMI	CTAG	3 cut(s)	138, 465, 480
StyD4I	CCNGG	1 cut(s)	380
StyI	CCWWGG	1 cut(s)	95
TaaI	ACNGT	2 cut(s)	241, 281
TaqI	TCGA	2 cut(s)	19, 29
TasI	AATT	2 cut(s)	12, 475
TfiI	GAWTC	4 cut(s)	21, 50, 189, 305
Tru1I	TTAA	4 cut(s)	57, 155, 423, 446
Tru9I	TTAA	4 cut(s)	57, 155, 423, 446
TscAI	CASTG	3 cut(s)	87, 284, 316
TseFI	GTSAC	1 cut(s)	275
Tsp45I	GTSAC	1 cut(s)	275
TspDTI	ATGAA	1 cut(s)	402
TspRI	CASTG	3 cut(s)	87, 284, 316
VpaK11BI	GGWCC	1 cut(s)	451
XapI	RAATTY	1 cut(s)	475
XbaI	TCTAGA	2 cut(s)	464, 479
XspI	CTAG	3 cut(s)	138, 465, 480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.