gag-polypeptide of LTR copia-type
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_5g19322 FvH4_5g31431 |
| malus_domestica | MD01G1222200.v1.1 MD14G1034300.v1.1 |
| prunus_persica | Prupe.2G033500_v2.0.a1 Prupe.7G032100_v2.0.a1 |
| pyrus_communis | pycom02g19670 pycom03g19000 pycom11g04720 pycom11g04870 pycom11g07640 pycom12g10550 pycom13g07730 pycom16g07450 pycom520g00380 |
| rosa_chinensis | RchiOBHm_Chr3g0481931 RchiOBHm_Chr3g0481941 RchiOBHm_Chr5g0017901 RchiOBHm_Chr5g0017911 |
| rosa_roxburghii | Rroxscaffold_1G00053310 Rroxscaffold_4G00308650 |
| rosa_rugosa | Rorug07G0315400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 60 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 334 |
| AcsI | RAATTY | 1 cut(s) | 352 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 334 |
| AgsI | TTSAA | 5 cut(s) | 12, 175, 304, 357, 394 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 74, 106 |
| AluBI | AGCT | 3 cut(s) | 40, 137, 142 |
| AluI | AGCT | 3 cut(s) | 40, 137, 142 |
| Alw21I | GWGCWC | 1 cut(s) | 263 |
| Alw26I | GTCTC | 2 cut(s) | 278, 414 |
| Alw44I | GTGCAC | 1 cut(s) | 259 |
| Ama87I | CYCGRG | 1 cut(s) | 143 |
| ApaLI | GTGCAC | 1 cut(s) | 259 |
| ApeKI | GCWGC | 1 cut(s) | 40 |
| ApoI | RAATTY | 1 cut(s) | 352 |
| AsuHPI | GGTGA | 2 cut(s) | 110, 377 |
| AvaI | CYCGRG | 1 cut(s) | 143 |
| BaeGI | GKGCMC | 1 cut(s) | 263 |
| Bbv12I | GWGCWC | 1 cut(s) | 263 |
| BbvCI | CCTCAGC | 1 cut(s) | 265 |
| BbvI | GCAGC | 1 cut(s) | 27 |
| BceAI | ACGGC | 1 cut(s) | 178 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 134, 168 |
| BcoDI | GTCTC | 2 cut(s) | 278, 414 |
| BglII | AGATCT | 1 cut(s) | 71 |
| BisI | GCNGC | 1 cut(s) | 41 |
| BlpI | GCTNAGC | 1 cut(s) | 138 |
| BlsI | GCNGC | 1 cut(s) | 42 |
| BmeT110I | CYCGRG | 1 cut(s) | 143 |
| Bpu10I | CCTNAGC | 1 cut(s) | 265 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 138 |
| BsaJI | CCNNGG | 1 cut(s) | 361 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 61, 91 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 334 |
| BseDI | CCNNGG | 1 cut(s) | 361 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 334 |
| BseMII | CTCAG | 2 cut(s) | 152, 279 |
| BseSI | GKGCMC | 1 cut(s) | 263 |
| BseXI | GCAGC | 1 cut(s) | 27 |
| BsiHKAI | GWGCWC | 1 cut(s) | 263 |
| BsiHKCI | CYCGRG | 1 cut(s) | 143 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 334 |
| BsmAI | GTCTC | 2 cut(s) | 278, 414 |
| BsmI | GAATGC | 1 cut(s) | 199 |
| BsoBI | CYCGRG | 1 cut(s) | 143 |
| Bsp1286I | GDGCHC | 1 cut(s) | 263 |
| Bsp143I | GATC | 3 cut(s) | 71, 244, 367 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 138 |
| BspCNI | CTCAG | 2 cut(s) | 151, 278 |
| BspHI | TCATGA | 1 cut(s) | 449 |
| BssECI | CCNNGG | 1 cut(s) | 361 |
| BssMI | GATC | 3 cut(s) | 71, 244, 367 |
| BssT1I | CCWWGG | 1 cut(s) | 361 |
| BstDEI | CTNAG | 2 cut(s) | 138, 265 |
| BstKTI | GATC | 3 cut(s) | 74, 247, 370 |
| BstMAI | GTCTC | 2 cut(s) | 278, 414 |
| BstMBI | GATC | 3 cut(s) | 71, 244, 367 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 134 |
| BstSLI | GKGCMC | 1 cut(s) | 263 |
| BstV1I | GCAGC | 1 cut(s) | 27 |
| BstX2I | RGATCY | 1 cut(s) | 71 |
| BstYI | RGATCY | 1 cut(s) | 71 |
| CciI | TCATGA | 1 cut(s) | 449 |
| CviAII | CATG | 1 cut(s) | 450 |
| CviJI | RGCY | 5 cut(s) | 40, 137, 142, 360, 445 |
| CviKI_1 | RGCY | 5 cut(s) | 40, 137, 142, 360, 445 |
| DdeI | CTNAG | 2 cut(s) | 138, 265 |
| DpnI | GATC | 3 cut(s) | 73, 246, 369 |
| DpnII | GATC | 3 cut(s) | 71, 244, 367 |
| Eco130I | CCWWGG | 1 cut(s) | 361 |
| Eco32I | GATATC | 1 cut(s) | 316 |
| Eco88I | CYCGRG | 1 cut(s) | 143 |
| EcoRV | GATATC | 1 cut(s) | 316 |
| EcoT14I | CCWWGG | 1 cut(s) | 361 |
| ErhI | CCWWGG | 1 cut(s) | 361 |
| FaeI | CATG | 1 cut(s) | 453 |
| FaiI | YATR | 9 cut(s) | 35, 60, 80, 88, 109, 249, 254, 427, 451 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 354, 386 |
| FatI | CATG | 1 cut(s) | 449 |
| Fnu4HI | GCNGC | 1 cut(s) | 41 |
| Fsp4HI | GCNGC | 1 cut(s) | 41 |
| GluI | GCNGC | 1 cut(s) | 41 |
| Hin1II | CATG | 1 cut(s) | 453 |
| HinfI | GANTC | 3 cut(s) | 5, 286, 414 |
| HphI | GGTGA | 2 cut(s) | 110, 377 |
| Hpy166II | GTNNAC | 2 cut(s) | 183, 261 |
| Hpy188III | TCNNGA | 5 cut(s) | 391, 411, 418, 431, 450 |
| Hpy8I | GTNNAC | 2 cut(s) | 183, 261 |
| HpyCH4V | TGCA | 4 cut(s) | 155, 197, 236, 261 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 134 |
| HpyF3I | CTNAG | 2 cut(s) | 138, 265 |
| Hsp92II | CATG | 1 cut(s) | 453 |
| Kzo9I | GATC | 3 cut(s) | 71, 244, 367 |
| LmnI | GCTCC | 1 cut(s) | 125 |
| LpnPI | CCDG | 2 cut(s) | 246, 403 |
| Lsp1109I | GCAGC | 1 cut(s) | 27 |
| MalI | GATC | 3 cut(s) | 73, 246, 369 |
| MboI | GATC | 3 cut(s) | 71, 244, 367 |
| MboII | GAAGA | 3 cut(s) | 113, 187, 406 |
| MflI | RGATCY | 1 cut(s) | 71 |
| MhlI | GDGCHC | 1 cut(s) | 263 |
| MluCI | AATT | 4 cut(s) | 344, 352, 383, 422 |
| MlyI | GAGTC | 2 cut(s) | 14, 280 |
| MmeI | TCCRAC | 1 cut(s) | 315 |
| MnlI | CCTC | 4 cut(s) | 139, 160, 274, 335 |
| MseI | TTAA | 2 cut(s) | 291, 399 |
| Mva1269I | GAATGC | 1 cut(s) | 199 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 134 |
| NdeII | GATC | 3 cut(s) | 71, 244, 367 |
| NlaIII | CATG | 1 cut(s) | 453 |
| PaeR7I | CTCGAG | 1 cut(s) | 143 |
| PagI | TCATGA | 1 cut(s) | 449 |
| PctI | GAATGC | 1 cut(s) | 199 |
| PfeI | GAWTC | 1 cut(s) | 414 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 334 |
| PkrI | GCNGC | 1 cut(s) | 42 |
| PleI | GAGTC | 2 cut(s) | 13, 280 |
| PpsI | GAGTC | 2 cut(s) | 13, 280 |
| PsiI | TTATAA | 1 cut(s) | 60 |
| PspXI | VCTCGAGB | 1 cut(s) | 143 |
| PsuI | RGATCY | 1 cut(s) | 71 |
| SaqAI | TTAA | 2 cut(s) | 291, 399 |
| SatI | GCNGC | 1 cut(s) | 41 |
| Sau3AI | GATC | 3 cut(s) | 71, 244, 367 |
| SchI | GAGTC | 2 cut(s) | 14, 280 |
| SduI | GDGCHC | 1 cut(s) | 263 |
| SetI | ASST | 6 cut(s) | 42, 139, 144, 204, 266, 367 |
| Sfr274I | CTCGAG | 1 cut(s) | 143 |
| SlaI | CTCGAG | 1 cut(s) | 143 |
| SmlI | CTYRAG | 1 cut(s) | 143 |
| SmoI | CTYRAG | 1 cut(s) | 143 |
| Sse9I | AATT | 4 cut(s) | 344, 352, 383, 422 |
| StyI | CCWWGG | 1 cut(s) | 361 |
| TaqI | TCGA | 4 cut(s) | 16, 144, 243, 412 |
| TasI | AATT | 4 cut(s) | 344, 352, 383, 422 |
| TfiI | GAWTC | 1 cut(s) | 414 |
| Tru1I | TTAA | 2 cut(s) | 291, 399 |
| Tru9I | TTAA | 2 cut(s) | 291, 399 |
| TseI | GCWGC | 1 cut(s) | 40 |
| TspDTI | ATGAA | 4 cut(s) | 95, 206, 269, 357 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 334 |
| VneI | GTGCAC | 1 cut(s) | 259 |
| XapI | RAATTY | 1 cut(s) | 352 |
| XhoI | CTCGAG | 1 cut(s) | 143 |