Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009688

Physical Location & Seq

Genomic Coordinates Forward (+)

28044763 .. 28048191

Gene Structure 3429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ44684

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2148 bp

ATGGAGTCTTCAAGTCGGAGTGCCGGACTTGGCATAGAGCTGCTCAACCAATCAAATTATAAGATGTGGAGATCTTGTATGCAGTCTTATTTGGTTGGTGGAGAACTGTGGGCTGTTGTTGGTGGAGCAAATACAGCTCAGCCTGAGGATAATGCAGAAAACGTTGAGGACTTGAAGAAGTGGACAACTATGAATGCAAAGGCAGAGTTCGTGCTAAAGAAATCCATTTCTCCTGCATTGTTCGATCATATTATGAAGTGCACCTCAGCAAATGATATTTGGGAGACTCTCAACAGACTCTTTAACAAGAAAGATATCGGTCGTCTCCAAATGTTGGAGAATGAATTGGCAAATTCAAGCCAAGGTGATCTTTCTATCTCTCAATTTTTCCTGAAGATCAAGAACTTGTGTTCGGAGATTTCAGTTTTAGATCCAGATGAACCTATCTCTGAGGCTCGTATGAGAAGACATATTATTCGTGGGTTGAGAAAGGAGTACACTCCCTTTGTTACTTCAATTCAAGGGTGGGATCGGCAACCCTCCTTGGAAGAATTTGAGAACCTCTTGTCTTCTCAAGAATCTCTAGCCCGACAAATGGCTGGAATTTCAATATCAAGCAACTCCAACAACACAGGGGAGGCACTCTTTGCTCATGGAAGGAAGAATTTCAGATTTGAGAAGAAAGAGTTTAAAAGGCATGTGAATGAAGGAGCTGGTGAACCTTCCCACAAGAAAAAGTTCAAGTGTCATCGATGTGGTAGGCCTGGTCATATCAAAAGGTTCTGCAATGTGAAGCTCAACTCCGGAAATTATGCTAGGAAAAATGGTGGCTTTCATGACTCAAGTCATGGTGAAGATGAAGACAGTTGGGGGAAATGTTTTATGGTGGAGTCATCAACTCTCAATGCCATGGCTTCTATTAATTTCCAAAATGATTGGATTGTGGACTCCGGCTGTGGCCATCATTTGACAGGTGATGAATCAAAGTTCTCCAAGTTACAACCACACATTGGCAATGAAGCTATGGTGACAGCAGATAATACAGTTCACAAGGTTGAGAATGAAGGCACGGTAGTCATTAACAATGGAGGTAACGATTCTATCACCTTAAATAATGTTTTCCATGTTCCTGGCATGAAGAAGAATTTATTTTCAGTTCCAAATGCTGTGGATGCTGGTTATAGTGTCTTGTTTGGGCCACATGATGTTAAATTTCTCCGAAATGTTAAATTTATAAAGGCAGATGTTATGCATACTGGTAGGAGGGTAAAAGATACGTTTGTGTTGTCTACCGCTTCATCTTATATTGATAAAGTGAGCTGCAATGAGAATGCATCCTTGTGGCATGCTAGATTGGGGCATGTGAACTTTGATAAGTTGAAAGTCATGGTTCGGAAGAATTTGGTGAAAGGTCTACCAAGCTTGACAACCTTTCCTAGCAAAGAAGTGTGTGAAGGGTGCCAATTCGGTAAGTCTCATCGTCTTCCATTCGGAATTTCTCAATCAAGAAGCAAGGCTCCCTTGGAATGCATTCATGGTGATTTATTTGGTCCTACTAGAACTCCTTCATTTTCTGGTCTTCGATATATGTTGATTCTTGTTGATGATTTTTCAAGATTTACATGGGTCTATTGTATTAAGCAAAAATCAGATGCTTTCTCAAAGTTTCAAGAGTTCAAAGAGATTGTTGAAGGTGTTCTTGGTTTGAAAATTAAGAGGCTGCGAACCGACAATGGGGGAGAGTTCATCTCTGATGAATTTTTTTCTTTTTGTCGTTGGTTTGGGATAAGAAGAGAGTTGTCTTGTGCAGAAACCCCCCAGCAAAATGGCATCGCAGAATGGAAGATCCGGCATCTCACGGAGACATGTAGAAGCTGGTTACATGCCAAAAATTTACCCAAGGCCTTATGGGCGGAGGGTATGATGTGTGCAGCCTATGTAATCAATCGGTTGCATTTGAGTCCAAATAACATGAAGACACCTTATGAGCTGATGTTTGGAGAGAAGCCTAGTGTAAAGCATTTCAAAGTGTTTGGCTCAATTTGCTATGTTCATGTGCCAGACTCTAGAAGAGGGAAGCTGGATGCAAAGGCGAAAAAATGCATATTTATTGGCTGGTGGTGGAGATACAAATTGGCAAGAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

KA1 Pkinase UBA

Protein Analysis

715

Amino Acids

81.11

Weight (kDa)

9.19

Isoelectric Point (pI)

41.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4219	PF13961	15 - 40	6.1e-07	Domain of unknown function (DUF4219)
Retrotran_gag_2	PF14223	27 - 193	1.4e-20	gag-polypeptide of LTR copia-type
Pol_BBD	PF22936	313 - 394	6.9e-20	Pol polyprotein, beta-barrel domain
gag_pre-integrs	PF13976	439 - 492	2.4e-15	GAG-pre-integrase domain
rve	PF00665	506 - 606	5.3e-13	Integrase core domain
SH3_retrovirus	PF25597	680 - 705	7.8e-09	Retroviral polymerase SH3-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009688)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g19322 FvH4_5g31431
malus_domestica	MD01G1222200.v1.1 MD14G1034300.v1.1
prunus_persica	Prupe.2G033500_v2.0.a1 Prupe.7G032100_v2.0.a1
pyrus_communis	pycom02g19670 pycom03g19000 pycom11g04720 pycom11g04870 pycom11g07640 pycom12g10550 pycom13g07730 pycom16g07450 pycom520g00380
rosa_chinensis	RchiOBHm_Chr3g0481931 RchiOBHm_Chr3g0481941 RchiOBHm_Chr5g0017901 RchiOBHm_Chr5g0017911
rosa_roxburghii	Rroxscaffold_1G00053310 Rroxscaffold_4G00308650
rosa_rugosa	Rorug07G0315400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	60, 1235
AccB1I	GGYRCC	1 cut(s)	1458
AccB7I	CCANNNNNTGG	2 cut(s)	334, 1010
AccI	GTMKAC	2 cut(s)	1289, 1414
AccIII	TCCGGA	1 cut(s)	803
AciI	CCGC	2 cut(s)	1293, 1913
AclI	AACGTT	1 cut(s)	162
AclWI	GGATC	3 cut(s)	425, 537, 1840
AcoI	YGGCCR	1 cut(s)	958
AcuI	CTGAAG	1 cut(s)	413
AfaI	GTAC	1 cut(s)	497
AfiI	CCNNNNNNNGG	4 cut(s)	334, 595, 1010, 1734
AflIII	ACRYGT	1 cut(s)	1865
AjnI	CCWGG	2 cut(s)	763, 1129
AjuI	GAANNNNNNNTTGG	2 cut(s)	1683, 1715
Alw21I	GWGCWC	1 cut(s)	263
Alw26I	GTCTC	4 cut(s)	278, 329, 1479, 1856
Alw44I	GTGCAC	1 cut(s)	259
AlwI	GGATC	3 cut(s)	425, 537, 1840
Aor13HI	TCCGGA	1 cut(s)	803
AoxI	GGCC	4 cut(s)	761, 958, 1196, 1902
ApaLI	GTGCAC	1 cut(s)	259
ApeKI	GCWGC	4 cut(s)	40, 1320, 1720, 1931
ArsI	GACNNNNNNTTYG	2 cut(s)	459, 491
AseI	ATTAAT	1 cut(s)	921
Asp700I	GAANNNNTTC	5 cut(s)	665, 737, 1530, 1564, 1695
AspS9I	GGNCC	2 cut(s)	1196, 1550
AsuHPI	GGTGA	8 cut(s)	377, 728, 863, 986, 1039, 1096, 1417, 1550
AvaII	GGWCC	1 cut(s)	1550
AxyI	CCTNAGG	1 cut(s)	144
BaeGI	GKGCMC	1 cut(s)	263
BaeI	ACNNNNGTAYC	2 cut(s)	1266, 1299
BalI	TGGCCA	1 cut(s)	960
BanI	GGYRCC	1 cut(s)	1458
BbsI	GAAGAC	6 cut(s)	472, 561, 867, 1475, 1571, 1982
Bbv12I	GWGCWC	1 cut(s)	263
BbvCI	CCTCAGC	1 cut(s)	265
BbvI	GCAGC	4 cut(s)	27, 1307, 1707, 1943
BccI	CCATC	1 cut(s)	969
BciT130I	CCWGG	2 cut(s)	765, 1131
BcoDI	GTCTC	4 cut(s)	278, 329, 1479, 1856
BfaI	CTAG	7 cut(s)	584, 816, 1350, 1437, 1557, 2010, 2067
BglI	GCCNNNNNGGC	1 cut(s)	1910
BglII	AGATCT	1 cut(s)	71
BisI	GCNGC	4 cut(s)	41, 1321, 1721, 1932
BlpI	GCTNAGC	1 cut(s)	138
BlsI	GCNGC	4 cut(s)	42, 1322, 1722, 1933
Bme1390I	CCNGG	2 cut(s)	765, 1131
Bme18I	GGWCC	1 cut(s)	1550
BmgT120I	GGNCC	2 cut(s)	1196, 1550
BmiI	GGNNCC	2 cut(s)	1460, 1518
BmrFI	CCNGG	2 cut(s)	765, 1131
BmsI	GCATC	6 cut(s)	1162, 1343, 1642, 1839, 1861, 2074
BoxI	GACNNNNGTC	1 cut(s)	843
BpiI	GAAGAC	6 cut(s)	472, 561, 867, 1475, 1571, 1982
BplI	GAGNNNNNCTC	2 cut(s)	1733, 1765
Bpu10I	CCTNAGC	1 cut(s)	265
Bpu1102I	GCTNAGC	1 cut(s)	138
BpuEI	CTTGAG	2 cut(s)	558, 826
Bsa29I	ATCGAT	1 cut(s)	751
BsaJI	CCNNGG	5 cut(s)	361, 543, 909, 1521, 1899
BsaWI	WCCGGW	1 cut(s)	803
BsaXI	ACNNNNNCTCC	4 cut(s)	61, 91, 1546, 1576
Bsc4I	CCNNNNNNNGG	4 cut(s)	334, 595, 1010, 1734
Bse1I	ACTGG	1 cut(s)	1261
Bse21I	CCTNAGG	1 cut(s)	144
Bse3DI	GCAATG	3 cut(s)	793, 1021, 1330
BseAI	TCCGGA	1 cut(s)	803
BseBI	CCWGG	2 cut(s)	765, 1131
BseCI	ATCGAT	1 cut(s)	751
BseDI	CCNNGG	5 cut(s)	361, 543, 909, 1521, 1899
BseGI	GGATG	3 cut(s)	1177, 1334, 2089
BseLI	CCNNNNNNNGG	4 cut(s)	334, 595, 1010, 1734
BseMI	GCAATG	3 cut(s)	793, 1021, 1330
BseMII	CTCAG	4 cut(s)	135, 152, 279, 441
BseNI	ACTGG	1 cut(s)	1261
BseSI	GKGCMC	1 cut(s)	263
BseXI	GCAGC	4 cut(s)	27, 1307, 1707, 1943
BseYI	CCCAGC	1 cut(s)	1818
BsgI	GTGCAG	2 cut(s)	1827, 1950
Bsh1285I	CGRYCG	1 cut(s)	322
BshFI	GGCC	4 cut(s)	763, 960, 1198, 1904
BshNI	GGYRCC	1 cut(s)	1458
BshVI	ATCGAT	1 cut(s)	751
BsiEI	CGRYCG	1 cut(s)	322
BsiHKAI	GWGCWC	1 cut(s)	263
BsiSI	CCGG	4 cut(s)	24, 804, 951, 1849
BslI	CCNNNNNNNGG	4 cut(s)	334, 595, 1010, 1734
BsmAI	GTCTC	4 cut(s)	278, 329, 1479, 1856
BsmBI	CGTCTC	1 cut(s)	329
BsmI	GAATGC	4 cut(s)	199, 1336, 1530, 1532
BsnI	GGCC	4 cut(s)	763, 960, 1198, 1904
Bsp1286I	GDGCHC	1 cut(s)	263
Bsp13I	TCCGGA	1 cut(s)	803
Bsp143I	GATC	7 cut(s)	71, 244, 367, 396, 430, 529, 1845
Bsp1720I	GCTNAGC	1 cut(s)	138
Bsp19I	CCATGG	1 cut(s)	909
BspACI	CCGC	2 cut(s)	1293, 1913
BspANI	GGCC	4 cut(s)	763, 960, 1198, 1904
BspCNI	CTCAG	4 cut(s)	136, 151, 278, 442
BspDI	ATCGAT	1 cut(s)	751
BspEI	TCCGGA	1 cut(s)	803
BspHI	TCATGA	1 cut(s)	835
BspLI	GGNNCC	2 cut(s)	1460, 1518
BspPI	GGATC	3 cut(s)	425, 537, 1840
BspT107I	GGYRCC	1 cut(s)	1458
BsrDI	GCAATG	3 cut(s)	793, 1021, 1330
BsrI	ACTGG	1 cut(s)	1261
BssECI	CCNNGG	5 cut(s)	361, 543, 909, 1521, 1899
BssMI	GATC	7 cut(s)	71, 244, 367, 396, 430, 529, 1845
BssT1I	CCWWGG	5 cut(s)	361, 543, 909, 1521, 1899
Bst2UI	CCWGG	2 cut(s)	765, 1131
Bst4CI	ACNGT	4 cut(s)	108, 866, 1045, 1072
Bst6I	CTCTTC	2 cut(s)	1786, 2065
BstAPI	GCANNNNNTGC	1 cut(s)	647
BstC8I	GCNNGC	1 cut(s)	1347
BstDEI	CTNAG	4 cut(s)	138, 144, 265, 450
BstDSI	CCRYGG	1 cut(s)	909
BstF5I	GGATG	3 cut(s)	1177, 1334, 2089
BstKTI	GATC	7 cut(s)	74, 247, 370, 399, 433, 532, 1848
BstMAI	GTCTC	4 cut(s)	278, 329, 1479, 1856
BstMBI	GATC	7 cut(s)	71, 244, 367, 396, 430, 529, 1845
BstMCI	CGRYCG	1 cut(s)	322
BstMWI	GCNNNNNNNGC	5 cut(s)	134, 647, 1172, 1910, 2043
BstNI	CCWGG	2 cut(s)	765, 1131
BstNSI	RCATGY	5 cut(s)	701, 1349, 1364, 1869, 1886
BstPAI	GACNNNNGTC	1 cut(s)	843
BstSCI	CCNGG	2 cut(s)	763, 1129
BstSLI	GKGCMC	1 cut(s)	263
BstV1I	GCAGC	4 cut(s)	27, 1307, 1707, 1943
BstV2I	GAAGAC	6 cut(s)	472, 561, 867, 1475, 1571, 1982
BstX2I	RGATCY	3 cut(s)	71, 430, 1845
BstXI	CCANNNNNNTGG	2 cut(s)	1130, 1826
BstYI	RGATCY	3 cut(s)	71, 430, 1845
Bsu15I	ATCGAT	1 cut(s)	751
Bsu36I	CCTNAGG	1 cut(s)	144
BsuRI	GGCC	4 cut(s)	763, 960, 1198, 1904
BsuTUI	ATCGAT	1 cut(s)	751
BtgI	CCRYGG	1 cut(s)	909
BtgZI	GCGATG	1 cut(s)	1816
BtsCI	GGATG	3 cut(s)	1177, 1334, 2089
Cac8I	GCNNGC	1 cut(s)	1347
CciI	TCATGA	1 cut(s)	835
Cfr13I	GGNCC	2 cut(s)	1196, 1550
ClaI	ATCGAT	1 cut(s)	751
Csp6I	GTAC	1 cut(s)	496
CspCI	CAANNNNNGTGG	2 cut(s)	1149, 1184
CviQI	GTAC	1 cut(s)	496
DdeI	CTNAG	4 cut(s)	138, 144, 265, 450
DpnI	GATC	7 cut(s)	73, 246, 369, 398, 432, 531, 1847
DpnII	GATC	7 cut(s)	71, 244, 367, 396, 430, 529, 1845
DraI	TTTAAA	1 cut(s)	691
EaeI	YGGCCR	1 cut(s)	958
Eam1104I	CTCTTC	2 cut(s)	1786, 2065
EarI	CTCTTC	2 cut(s)	1786, 2065
EciI	GGCGGA	1 cut(s)	1928
Eco130I	CCWWGG	5 cut(s)	361, 543, 909, 1521, 1899
Eco147I	AGGCCT	2 cut(s)	763, 1904
Eco32I	GATATC	1 cut(s)	316
Eco47I	GGWCC	1 cut(s)	1550
Eco57I	CTGAAG	1 cut(s)	413
Eco81I	CCTNAGG	1 cut(s)	144
EcoRII	CCWGG	2 cut(s)	763, 1129
EcoRV	GATATC	1 cut(s)	316
EcoT14I	CCWWGG	5 cut(s)	361, 543, 909, 1521, 1899
EcoT22I	ATGCAT	4 cut(s)	1254, 1336, 1532, 2105
ErhI	CCWWGG	5 cut(s)	361, 543, 909, 1521, 1899
Esp3I	CGTCTC	1 cut(s)	329
FalI	AAGNNNNNCTT	6 cut(s)	354, 386, 1505, 1537, 1683, 1715
FblI	GTMKAC	2 cut(s)	1289, 1414
Fnu4HI	GCNGC	4 cut(s)	41, 1321, 1721, 1932
FokI	GGATG	3 cut(s)	1184, 1321, 2096
Fsp4HI	GCNGC	4 cut(s)	41, 1321, 1721, 1932
FspBI	CTAG	7 cut(s)	584, 816, 1350, 1437, 1557, 2010, 2067
GluI	GCNGC	4 cut(s)	41, 1321, 1721, 1932
GsaI	CCCAGC	1 cut(s)	1822
HaeIII	GGCC	4 cut(s)	763, 960, 1198, 1904
HapII	CCGG	4 cut(s)	24, 804, 951, 1849
HindIII	AAGCTT	1 cut(s)	1420
HpaII	CCGG	4 cut(s)	24, 804, 951, 1849
HphI	GGTGA	8 cut(s)	377, 728, 863, 986, 1039, 1096, 1417, 1550
Hpy166II	GTNNAC	9 cut(s)	183, 261, 498, 719, 946, 1048, 1290, 1366, 1415
Hpy8I	GTNNAC	9 cut(s)	183, 261, 498, 719, 946, 1048, 1290, 1366, 1415
HpyAV	CCTTC	7 cut(s)	651, 701, 732, 1058, 1448, 1575, 1685
HpyCH4III	ACNGT	4 cut(s)	108, 866, 1045, 1072
HpyCH4IV	ACGT	2 cut(s)	162, 1277
HpyF10VI	GCNNNNNNNGC	5 cut(s)	134, 647, 1172, 1910, 2043
HpyF3I	CTNAG	4 cut(s)	138, 144, 265, 450
HpySE526I	ACGT	2 cut(s)	162, 1277
Kpn2I	TCCGGA	1 cut(s)	803
Kzo9I	GATC	7 cut(s)	71, 244, 367, 396, 430, 529, 1845
LmnI	GCTCC	3 cut(s)	125, 710, 1522
Lsp1109I	GCAGC	4 cut(s)	27, 1307, 1707, 1943
LweI	GCATC	6 cut(s)	1162, 1343, 1642, 1839, 1861, 2074
MaeI	CTAG	7 cut(s)	584, 816, 1350, 1437, 1557, 2010, 2067
MaeII	ACGT	2 cut(s)	162, 1277
MaeIII	GTNAC	5 cut(s)	508, 996, 1027, 1091, 1878
MalI	GATC	7 cut(s)	73, 246, 369, 398, 432, 531, 1847
MboI	GATC	7 cut(s)	71, 244, 367, 396, 430, 529, 1845
MflI	RGATCY	3 cut(s)	71, 430, 1845
MhlI	GDGCHC	1 cut(s)	263
MlsI	TGGCCA	1 cut(s)	960
MluNI	TGGCCA	1 cut(s)	960
MlyI	GAGTC	8 cut(s)	14, 280, 291, 833, 899, 941, 1969, 2057
MmeI	TCCRAC	2 cut(s)	315, 648
Mox20I	TGGCCA	1 cut(s)	960
Mph1103I	ATGCAT	4 cut(s)	1254, 1336, 1532, 2105
MroI	TCCGGA	1 cut(s)	803
MroXI	GAANNNNTTC	5 cut(s)	665, 737, 1530, 1564, 1695
MscI	TGGCCA	1 cut(s)	960
MseI	TTAA	9 cut(s)	303, 690, 921, 1080, 1109, 1209, 1227, 1638, 1713
MslI	CAYNNNNRTG	3 cut(s)	702, 753, 1339
Msp20I	TGGCCA	1 cut(s)	960
MspI	CCGG	4 cut(s)	24, 804, 951, 1849
MspR9I	CCNGG	2 cut(s)	765, 1131
Mva1269I	GAATGC	4 cut(s)	199, 1336, 1530, 1532
MvaI	CCWGG	2 cut(s)	765, 1131
MwoI	GCNNNNNNNGC	5 cut(s)	134, 647, 1172, 1910, 2043
NcoI	CCATGG	1 cut(s)	909
NdeII	GATC	7 cut(s)	71, 244, 367, 396, 430, 529, 1845
NlaIV	GGNNCC	2 cut(s)	1460, 1518
NmuCI	GTSAC	1 cut(s)	1027
NsiI	ATGCAT	4 cut(s)	1254, 1336, 1532, 2105
NspI	RCATGY	5 cut(s)	701, 1349, 1364, 1869, 1886
PaeI	GCATGC	1 cut(s)	1349
PagI	TCATGA	1 cut(s)	835
PceI	AGGCCT	2 cut(s)	763, 1904
PciI	ACATGT	1 cut(s)	1865
PctI	GAATGC	4 cut(s)	199, 1336, 1530, 1532
PdmI	GAANNNNTTC	5 cut(s)	665, 737, 1530, 1564, 1695
PfeI	GAWTC	5 cut(s)	578, 980, 1097, 1594, 2142
PflMI	CCANNNNNTGG	2 cut(s)	334, 1010
PkrI	GCNGC	4 cut(s)	42, 1322, 1722, 1933
PleI	GAGTC	8 cut(s)	13, 280, 291, 833, 898, 941, 1968, 2057
PpsI	GAGTC	8 cut(s)	13, 280, 291, 833, 898, 941, 1968, 2057
PscI	ACATGT	1 cut(s)	1865
PshAI	GACNNNNGTC	1 cut(s)	843
PshBI	ATTAAT	1 cut(s)	921
PsiI	TTATAA	2 cut(s)	60, 1235
Psp1406I	AACGTT	1 cut(s)	162
Psp6I	CCWGG	2 cut(s)	763, 1129
PspFI	CCCAGC	1 cut(s)	1818
PspGI	CCWGG	2 cut(s)	763, 1129
PspN4I	GGNNCC	2 cut(s)	1460, 1518
PspPI	GGNCC	2 cut(s)	1196, 1550
PsuI	RGATCY	3 cut(s)	71, 430, 1845
RsaI	GTAC	1 cut(s)	497
RsaNI	GTAC	1 cut(s)	496
RseI	CAYNNNNRTG	3 cut(s)	702, 753, 1339
SaqAI	TTAA	9 cut(s)	303, 690, 921, 1080, 1109, 1209, 1227, 1638, 1713
SatI	GCNGC	4 cut(s)	41, 1321, 1721, 1932
Sau3AI	GATC	7 cut(s)	71, 244, 367, 396, 430, 529, 1845
Sau96I	GGNCC	2 cut(s)	1196, 1550
SchI	GAGTC	8 cut(s)	14, 280, 291, 833, 899, 941, 1969, 2057
ScrFI	CCNGG	2 cut(s)	765, 1131
SduI	GDGCHC	1 cut(s)	263
SfaNI	GCATC	6 cut(s)	1162, 1343, 1642, 1839, 1861, 2074
SinI	GGWCC	1 cut(s)	1550
SmiMI	CAYNNNNRTG	3 cut(s)	702, 753, 1339
SmlI	CTYRAG	2 cut(s)	573, 841
SmoI	CTYRAG	2 cut(s)	573, 841
SphI	GCATGC	1 cut(s)	1349
SseBI	AGGCCT	2 cut(s)	763, 1904
SsiI	CCGC	2 cut(s)	1293, 1913
SspMI	CTAG	7 cut(s)	584, 816, 1350, 1437, 1557, 2010, 2067
StuI	AGGCCT	2 cut(s)	763, 1904
StyD4I	CCNGG	2 cut(s)	763, 1129
StyI	CCWWGG	5 cut(s)	361, 543, 909, 1521, 1899
TaaI	ACNGT	4 cut(s)	108, 866, 1045, 1072
TaiI	ACGT	2 cut(s)	165, 1280
TaqI	TCGA	3 cut(s)	243, 751, 1582
TaqII	GACCGA	1 cut(s)	308
TatI	WGTACW	1 cut(s)	495
TfiI	GAWTC	5 cut(s)	578, 980, 1097, 1594, 2142
Tru1I	TTAA	9 cut(s)	303, 690, 921, 1080, 1109, 1209, 1227, 1638, 1713
Tru9I	TTAA	9 cut(s)	303, 690, 921, 1080, 1109, 1209, 1227, 1638, 1713
TseFI	GTSAC	1 cut(s)	1027
TseI	GCWGC	4 cut(s)	40, 1320, 1720, 1931
Tsp45I	GTSAC	1 cut(s)	1027
TspGWI	ACGGA	1 cut(s)	1874
Van91I	CCANNNNNTGG	2 cut(s)	334, 1010
VneI	GTGCAC	1 cut(s)	259
VpaK11BI	GGWCC	1 cut(s)	1550
VspI	ATTAAT	1 cut(s)	921
XbaI	TCTAGA	1 cut(s)	2066
XceI	RCATGY	5 cut(s)	701, 1349, 1364, 1869, 1886
XmiI	GTMKAC	2 cut(s)	1289, 1414
XmnI	GAANNNNTTC	5 cut(s)	665, 737, 1530, 1564, 1695
XspI	CTAG	7 cut(s)	584, 816, 1350, 1437, 1557, 2010, 2067
Zsp2I	ATGCAT	4 cut(s)	1254, 1336, 1532, 2105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.