Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0009688

Physical Location & Seq

Genomic Coordinates Forward (+)

12557463 .. 12557735

Gene Structure 273 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g10550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGAGGGAGCAAACTGCTCAAATCCAAATGGGTCCAGATGAGCTTGGGGATTTTCTTGATGGTGACAATGTCGAGCAAGAAGTAGATAAGAGTCCTTGGCAAACTAGTGTGTATCAACAACCAGGAAAAGTTAGACCTGGTCAAGTGGAAGTATCATTTCCACAATCACAACTAAGGAGGTCAACGAGAATACGTAAGACAAATCCAAAATACACCAGCATAGCAATAGATGAAGAAGCAGTTGAACGTAAGATGCGTGAAAAAGTATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

91

Amino Acids

10.38

Weight (kDa)

5.46

Isoelectric Point (pI)

45.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009688)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g19322 FvH4_5g31431
malus_domestica	MD01G1222200.v1.1 MD14G1034300.v1.1
prunus_persica	Prupe.2G033500_v2.0.a1 Prupe.7G032100_v2.0.a1
pyrus_communis	pycom02g19670 pycom03g19000 pycom11g04720 pycom11g04870 pycom11g07640 pycom12g10550 pycom13g07730 pycom16g07450 pycom520g00380
rosa_chinensis	RchiOBHm_Chr3g0481931 RchiOBHm_Chr3g0481941 RchiOBHm_Chr5g0017901 RchiOBHm_Chr5g0017911
rosa_roxburghii	Rroxscaffold_1G00053310 Rroxscaffold_4G00308650
rosa_rugosa	Rorug07G0315400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	245
AhlI	ACTAGT	1 cut(s)	104
AjnI	CCWGG	2 cut(s)	121, 136
AluBI	AGCT	1 cut(s)	43
AluI	AGCT	1 cut(s)	43
AspS9I	GGNCC	1 cut(s)	32
AsuHPI	GGTGA	1 cut(s)	74
AvaII	GGWCC	1 cut(s)	32
BccI	CCATC	1 cut(s)	53
BciT130I	CCWGG	2 cut(s)	123, 138
BcuI	ACTAGT	1 cut(s)	104
BfaI	CTAG	1 cut(s)	105
Bme1390I	CCNGG	2 cut(s)	123, 138
Bme18I	GGWCC	1 cut(s)	32
BmgT120I	GGNCC	1 cut(s)	32
BmiI	GGNNCC	1 cut(s)	33
BmrFI	CCNGG	2 cut(s)	123, 138
BmsI	GCATC	1 cut(s)	243
BsaAI	YACGTR	1 cut(s)	194
BsaJI	CCNNGG	1 cut(s)	95
BseBI	CCWGG	2 cut(s)	123, 138
BseDI	CCNNGG	1 cut(s)	95
BspLI	GGNNCC	1 cut(s)	33
BssECI	CCNNGG	1 cut(s)	95
BssT1I	CCWWGG	1 cut(s)	95
Bst2UI	CCWGG	2 cut(s)	123, 138
BstBAI	YACGTR	1 cut(s)	194
BstDEI	CTNAG	1 cut(s)	173
BstNI	CCWGG	2 cut(s)	123, 138
BstSCI	CCNGG	2 cut(s)	121, 136
BstSNI	TACGTA	1 cut(s)	194
Cfr13I	GGNCC	1 cut(s)	32
CsiI	ACCWGGT	1 cut(s)	136
CviJI	RGCY	1 cut(s)	43
CviKI_1	RGCY	1 cut(s)	43
DdeI	CTNAG	1 cut(s)	173
Eco105I	TACGTA	1 cut(s)	194
Eco130I	CCWWGG	1 cut(s)	95
Eco47I	GGWCC	1 cut(s)	32
EcoRII	CCWGG	2 cut(s)	121, 136
EcoT14I	CCWWGG	1 cut(s)	95
ErhI	CCWWGG	1 cut(s)	95
FaiI	YATR	2 cut(s)	221, 271
FspBI	CTAG	1 cut(s)	105
HincII	GTYRAC	1 cut(s)	183
HindII	GTYRAC	1 cut(s)	183
HinfI	GANTC	1 cut(s)	91
HphI	GGTGA	1 cut(s)	74
Hpy166II	GTNNAC	1 cut(s)	183
Hpy188III	TCNNGA	2 cut(s)	35, 56
Hpy8I	GTNNAC	1 cut(s)	183
HpyCH4IV	ACGT	2 cut(s)	193, 247
HpyF3I	CTNAG	1 cut(s)	173
HpySE526I	ACGT	2 cut(s)	193, 247
LmnI	GCTCC	1 cut(s)	7
LpnPI	CCDG	6 cut(s)	48, 108, 123, 135, 150, 229
LweI	GCATC	1 cut(s)	243
MabI	ACCWGGT	1 cut(s)	136
MaeI	CTAG	1 cut(s)	105
MaeII	ACGT	2 cut(s)	193, 247
MaeIII	GTNAC	1 cut(s)	62
MboII	GAAGA	1 cut(s)	245
MlyI	GAGTC	1 cut(s)	100
MnlI	CCTC	1 cut(s)	171
MspR9I	CCNGG	2 cut(s)	123, 138
MvaI	CCWGG	2 cut(s)	123, 138
NlaIV	GGNNCC	1 cut(s)	33
NmuCI	GTSAC	1 cut(s)	62
PcsI	WCGNNNNNNNCGW	1 cut(s)	253
PflFI	GACNNNGTC	2 cut(s)	68, 138
PleI	GAGTC	1 cut(s)	99
PpsI	GAGTC	1 cut(s)	99
Ppu21I	YACGTR	1 cut(s)	194
Psp6I	CCWGG	2 cut(s)	121, 136
PspGI	CCWGG	2 cut(s)	121, 136
PspN4I	GGNNCC	1 cut(s)	33
PspPI	GGNCC	1 cut(s)	32
PsyI	GACNNNGTC	2 cut(s)	68, 138
Sau96I	GGNCC	1 cut(s)	32
SchI	GAGTC	1 cut(s)	100
ScrFI	CCNGG	2 cut(s)	123, 138
SetI	ASST	5 cut(s)	45, 139, 182, 196, 250
SexAI	ACCWGGT	1 cut(s)	136
SfaNI	GCATC	1 cut(s)	243
SinI	GGWCC	1 cut(s)	32
SnaBI	TACGTA	1 cut(s)	194
SpeI	ACTAGT	1 cut(s)	104
SspMI	CTAG	1 cut(s)	105
StyD4I	CCNGG	2 cut(s)	121, 136
StyI	CCWWGG	1 cut(s)	95
TaiI	ACGT	2 cut(s)	196, 250
TaqI	TCGA	1 cut(s)	72
TseFI	GTSAC	1 cut(s)	62
Tsp45I	GTSAC	1 cut(s)	62
TspDTI	ATGAA	1 cut(s)	246
Tth111I	GACNNNGTC	2 cut(s)	68, 138
VpaK11BI	GGWCC	1 cut(s)	32
XspI	CTAG	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.