Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0007850

Physical Location & Seq

Genomic Coordinates Reverse (-)

28201080 .. 28207398

Gene Structure 6319 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1191000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2205 bp

ATGTCTCTGGAATCTTCCCTTCCTCCGATCCCAGCCGTCCGATCCTCGCCGGAGCCCCTACAGCAAGAACAACCCCCTCAGAACGAAAAAGCGACATCAGCCCCGGCCCCCACGCCTCCCCTGTCCAGGAGCAACCGCCCCTCCCGCGCCTGCACCATACGCGCCGCCGCTCGGATACAGCAGCAGTTCCAGCAGCAGCAGAACCAACCCGCCGAGAAACGGCGAGCCGTCAACAAAAAGGAACAGCAGCAGCAGCAGCAGAGAGACGACGAGTCGTCGTCGCCTCAATGCAGCAGCGCCAGCAAGATTGTGACGCCGCTGGTGGGACCTCCCCCTCCCTCGCAATTGCCGCGCTGGACCCTCCGCTCCATGTGGGAATTGGCTTCCCTACTCAATTTCTTGCACGCTTTTCGGCCGCTGTTGAATATTTCGGCTGAGTTCTCGGCAGAGGAGTTGGAGACGGCTTTGATCACACCCAACGATACTTTGAGTGACATTCACATTCCATTGTTGAAGGCAATTCCTCCAATTACGCGAATGGCACTTACACGTGATACTTGGGTCACTGTTTTATGCAGAAAGTTGAGAGACTGGTGGCATTGGGTTGCAGAGGGGGATCTACCCATTGTTGCTTCACATGGGGCGGAGATTGAGGCATATAAAACACTTGAGCCTGGGGTCCGTGTGGTCATCTTGAAAGCACTTTGTGATATCCGCGTTGAGCAAGAAGATATTCGGAACTATATTGACAACTCGCTGAAGCATGGAGTTCAGCATTCAGCATTTCGCAAAGAACGTGTTGGAGGTGATTCACAAGGAATATCTTACTGGTATGAAGATGATCCAATAATTGGTTATCGGTTATATCGGGAGATCAGGAAGGTTGATATGAAGAAAGTAAAAGGAAAAGGTTCCCATGTCCTTCCTAGTGCGTCATATCAGTGGGAAACAGTAGCAACCAATTTCGATGAATTCCAAGATGTTTCTGAGAAACTTTTCTCGAGTAAGAATAGAACGGAGGCTTCTCTAGGGAAGAAGTTGAAAGGAGACATGCTTGCAGAGATTGAGAAGGTTCACAAGAGGAAAGAGAGGCAGATGAAGAAGCAACACAGACAAGCTCTCCTCCTTGATAATTTTTTGACTGTGGATGGGCTTGGTCCAGGGCGCTCTCTTCGTGACAGAAAACCTGTAACCTACACTTTTGATGATTATGACCGGTCCATCAATGAGGCAATCAAAGTAACCAAGTATGGAAAGAAGCAGCCATCTCCAGACCCTTTACAGAAACGAGAGCTAGTTGGGAGACCTGAAGCTTCTAGTAATGGTAAATGGAGTGCTACTACAAATTCCTATGAACATGTAGGATTTAGTGCTGCATCGCCTAAATCACCTGATTATGATGATGATGATGATGATGATGTTGATGGCGAAGAAGATAACAAGTCTGAACAATTGGATCGAAGCAATCGGCGAAGACAGAGGCCCCAACGGTATTCTGCGAAAGACTTTGTTGAAGCAGTTTCAGATAATGATGCAGACTTTGACAGTGATGATGATATAGTTGGTGAGGCTGTATATGATGAGGAATACTTGAAGAAACGTAAAGAGAGAAGAAAGTTTTCTAGTAGCTCTGAAGGAGATGAGGAGTATCATTTTGAGGAAGAAAATGCTGAAGAAGAGGAAGAAGAGGAAATGGAAGATTCCGCGAGTGCCAGTGAGGATAGTGATGAACCCCGAAAATTTAAAAAGTTGCCAGGCCGTACTAGGAGGGAAGCTAAATTGAGGTCTGTTGATGAGCTCCAGTCCGGTTTGAGACGCAGTAAGAGGGCCACCAGAAATCGTATTGATTATCGACAATATGAGTTCTCAGAATCGGAACCGGAGCCTATGAAACCTGAGAAATCAAATGCATCGGATGGACATTATGATGCCAGTGAAAACGGGGATTATTCAATGGAAAGTCATGATTCAGATGGTAATATTGAGGACCAAGAAATGAAAGTTGGTCAGGCAGTTGAAAATTACCCTGAGACAACAGTTGAGAAAGAGCAAAACCAGCCACCTGAAAAACCAAATAGCCCAGGGGAAGATGAAGTCGAAGGTGTACAGAAAAGACGTTTCCTCGACCTAAATGAGCTAGCCCCTGGTTCAGGTTTTGACGACGGTCCAAACTCAATAATGAAAGATGATGCGGATGATTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDT WHIM1

Protein Analysis

735

Amino Acids

83.68

Weight (kDa)

5.07

Isoelectric Point (pI)

63.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18950 AT1G18950 AT1G18950
fragaria_vesca	FvH4_5g15860 FvH4_5g15860 FvH4_5g15860
malus_domestica	MD06G1185100.v1.1 MD14G1191000.v1.1
prunus_persica	Prupe.5G183900_v2.0.a1 Prupe.5G183900_v2.0.a1
pyrus_communis	pycom06g16430 pycom14g15870
rosa_chinensis	RchiOBHm_Chr7g0180231
rosa_laevigata	RLG00000005283
rosa_multiflora	Rmu_co8416195.1_g000001 Rmu_sc0002953.1_g000006 Rmu_sc0011963.1_g000009
rosa_roxburghii	Rroxscaffold_3G00273040
rosa_rugosa	Rorug06G0431700
rosa_samantha	Rh7AG031900 Rh7BG032000 Rh7CG033800 Rh7DG032300
rosa_wichuraiana	Rw7G002660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	851
AccBSI	CCGCTC	2 cut(s)	170, 366
AccII	CGCG	6 cut(s)	147, 162, 352, 535, 717, 1706
AclWI	GGATC	5 cut(s)	22, 36, 624, 836, 1464
AcoI	YGGCCR	1 cut(s)	413
AcsI	RAATTY	3 cut(s)	971, 1345, 1739
AcuI	CTGAAG	4 cut(s)	779, 1329, 1653, 1692
AcvI	CACGTG	1 cut(s)	551
AcyI	GRCGYC	1 cut(s)	314
AdeI	CACNNNGTG	1 cut(s)	707
AfaI	GTAC	2 cut(s)	1762, 2106
AfiI	CCNNNNNNNGG	6 cut(s)	126, 171, 219, 323, 851, 2150
AflIII	ACRYGT	3 cut(s)	548, 796, 1357
AgeI	ACCGGT	1 cut(s)	1215
AgsI	TTSAA	8 cut(s)	424, 514, 697, 1042, 1514, 1594, 1953, 2018
AhdI	GACNNNNNGTC	2 cut(s)	271, 274
AjnI	CCWGG	6 cut(s)	125, 673, 1159, 1753, 2080, 2143
AjuI	GAANNNNNNNTTGG	2 cut(s)	1986, 2018
AluBI	AGCT	7 cut(s)	1118, 1294, 1313, 1629, 1775, 1798, 2137
AluI	AGCT	7 cut(s)	1118, 1294, 1313, 1629, 1775, 1798, 2137
Alw21I	GWGCWC	1 cut(s)	1800
Alw26I	GTCTC	8 cut(s)	9, 258, 452, 582, 1041, 1297, 1807, 2024
AlwI	GGATC	5 cut(s)	22, 36, 624, 836, 1464
Ama87I	CYCGRG	1 cut(s)	1000
AoxI	GGCC	5 cut(s)	105, 413, 1481, 1756, 1827
ApoI	RAATTY	3 cut(s)	971, 1345, 1739
AsiGI	ACCGGT	1 cut(s)	1215
Asp700I	GAANNNNTTC	4 cut(s)	732, 910, 995, 1618
AspLEI	GCGC	5 cut(s)	149, 164, 299, 354, 1167
AsuC2I	CCSGG	1 cut(s)	104
AsuHPI	GGTGA	3 cut(s)	818, 1380, 1577
AsuNHI	GCTAGC	1 cut(s)	2137
AvaI	CYCGRG	1 cut(s)	1000
AvaII	GGWCC	7 cut(s)	326, 357, 679, 1157, 1218, 1987, 2165
BaeI	ACNNNNGTAYC	2 cut(s)	546, 579
BanII	GRGCYC	2 cut(s)	57, 1800
BbrPI	CACGTG	1 cut(s)	551
BbsI	GAAGAC	1 cut(s)	1480
Bbv12I	GWGCWC	1 cut(s)	1800
BccI	CCATC	6 cut(s)	1142, 1229, 1273, 1418, 1910, 1967
BceAI	ACGGC	5 cut(s)	20, 212, 236, 477, 1743
BcgI	CGANNNNNNTGC	2 cut(s)	392, 426
BciT130I	CCWGG	6 cut(s)	127, 675, 1161, 1755, 2082, 2145
BciVI	GTATCC	1 cut(s)	168
BclI	TGATCA	1 cut(s)	468
BcnI	CCSGG	1 cut(s)	104
BcoDI	GTCTC	8 cut(s)	9, 258, 452, 582, 1041, 1297, 1807, 2024
BfaI	CTAG	7 cut(s)	927, 1028, 1295, 1317, 1623, 1764, 2138
BfmI	CTRYAG	1 cut(s)	59
BfoI	RGCGCY	2 cut(s)	300, 1168
BfuI	GTATCC	1 cut(s)	168
Bme1390I	CCNGG	7 cut(s)	104, 127, 675, 1161, 1755, 2082, 2145
Bme18I	GGWCC	7 cut(s)	326, 357, 679, 1157, 1218, 1987, 2165
BmeRI	GACNNNNNGTC	2 cut(s)	271, 274
BmeT110I	CYCGRG	1 cut(s)	1000
BmiI	GGNNCC	9 cut(s)	54, 108, 327, 359, 680, 913, 1484, 1878, 1884
BmrFI	CCNGG	7 cut(s)	104, 127, 675, 1161, 1755, 2082, 2145
BmsI	GCATC	5 cut(s)	1385, 1522, 1918, 1919, 2179
BmtI	GCTAGC	1 cut(s)	2141
BoxI	GACNNNNGTC	1 cut(s)	2163
BpiI	GAAGAC	1 cut(s)	1480
BpmI	CTGGAG	2 cut(s)	1254, 1784
BpuEI	CTTGAG	1 cut(s)	689
BpuMI	CCSGG	1 cut(s)	104
BsaAI	YACGTR	1 cut(s)	551
BsaHI	GRCGYC	1 cut(s)	314
BsaI	GGTCTC	1 cut(s)	1297
BsaJI	CCNNGG	6 cut(s)	102, 674, 1160, 2080, 2081, 2143
BsaWI	WCCGGW	3 cut(s)	1215, 1805, 1879
BsaXI	ACNNNNNCTCC	4 cut(s)	125, 155, 1104, 1134
Bsc4I	CCNNNNNNNGG	6 cut(s)	126, 171, 219, 323, 851, 2150
Bse118I	RCCGGY	1 cut(s)	1215
Bse1I	ACTGG	5 cut(s)	596, 833, 1713, 1801, 1932
BseBI	CCWGG	6 cut(s)	127, 675, 1161, 1755, 2082, 2145
BseDI	CCNNGG	6 cut(s)	102, 674, 1160, 2080, 2081, 2143
BseGI	GGATG	3 cut(s)	1153, 1921, 2200
BseLI	CCNNNNNNNGG	6 cut(s)	126, 171, 219, 323, 851, 2150
BseMII	CTCAG	6 cut(s)	92, 426, 978, 1881, 1887, 2019
BseNI	ACTGG	5 cut(s)	596, 833, 1713, 1801, 1932
BseRI	GAGGAG	3 cut(s)	464, 1112, 1658
BseX3I	CGGCCG	1 cut(s)	413
BseYI	CCCAGC	1 cut(s)	31
BsgI	GTGCAG	1 cut(s)	136
Bsh1236I	CGCG	6 cut(s)	147, 162, 352, 535, 717, 1706
Bsh1285I	CGRYCG	1 cut(s)	416
BshFI	GGCC	5 cut(s)	107, 415, 1483, 1758, 1829
BshTI	ACCGGT	1 cut(s)	1215
BsiEI	CGRYCG	1 cut(s)	416
BsiHKAI	GWGCWC	1 cut(s)	1800
BsiHKCI	CYCGRG	1 cut(s)	1000
BsiSI	CCGG	5 cut(s)	50, 104, 1216, 1806, 1880
BslFI	GGGAC	1 cut(s)	339
BslI	CCNNNNNNNGG	6 cut(s)	126, 171, 219, 323, 851, 2150
BsmAI	GTCTC	8 cut(s)	9, 258, 452, 582, 1041, 1297, 1807, 2024
BsmBI	CGTCTC	3 cut(s)	258, 452, 1807
BsmFI	GGGAC	1 cut(s)	339
BsmI	GAATGC	1 cut(s)	775
BsnI	GGCC	5 cut(s)	107, 415, 1483, 1758, 1829
Bso31I	GGTCTC	1 cut(s)	1297
BsoBI	CYCGRG	1 cut(s)	1000
Bsp1286I	GDGCHC	2 cut(s)	57, 1800
Bsp1407I	TGTACA	1 cut(s)	2104
Bsp143I	GATC	7 cut(s)	27, 41, 468, 616, 841, 873, 1456
BspANI	GGCC	5 cut(s)	107, 415, 1483, 1758, 1829
BspCNI	CTCAG	6 cut(s)	91, 427, 979, 1880, 1888, 2020
BspFNI	CGCG	6 cut(s)	147, 162, 352, 535, 717, 1706
BspHI	TCATGA	1 cut(s)	1963
BspLI	GGNNCC	9 cut(s)	54, 108, 327, 359, 680, 913, 1484, 1878, 1884
BspOI	GCTAGC	1 cut(s)	2141
BspPI	GGATC	5 cut(s)	22, 36, 624, 836, 1464
BspTNI	GGTCTC	1 cut(s)	1297
BsrBI	CCGCTC	2 cut(s)	170, 366
BsrFI	RCCGGY	1 cut(s)	1215
BsrGI	TGTACA	1 cut(s)	2104
BsrI	ACTGG	5 cut(s)	596, 833, 1713, 1801, 1932
BssAI	RCCGGY	1 cut(s)	1215
BssECI	CCNNGG	6 cut(s)	102, 674, 1160, 2080, 2081, 2143
BssMI	GATC	7 cut(s)	27, 41, 468, 616, 841, 873, 1456
BssNI	GRCGYC	1 cut(s)	314
Bst2UI	CCWGG	6 cut(s)	127, 675, 1161, 1755, 2082, 2145
Bst4CI	ACNGT	7 cut(s)	568, 952, 1144, 1491, 1547, 2038, 2165
Bst6I	CTCTTC	3 cut(s)	1176, 1671, 1680
BstACI	GRCGYC	1 cut(s)	314
BstAUI	TGTACA	1 cut(s)	2104
BstBAI	YACGTR	1 cut(s)	551
BstC8I	GCNNGC	6 cut(s)	151, 225, 301, 405, 1056, 2139
BstDEI	CTNAG	6 cut(s)	78, 435, 987, 1867, 1896, 2028
BstENI	CCTNNNNNAGG	1 cut(s)	2148
BstF5I	GGATG	3 cut(s)	1153, 1921, 2200
BstFNI	CGCG	6 cut(s)	147, 162, 352, 535, 717, 1706
BstH2I	RGCGCY	2 cut(s)	300, 1168
BstHHI	GCGC	5 cut(s)	149, 164, 299, 354, 1167
BstKTI	GATC	7 cut(s)	30, 44, 471, 619, 844, 876, 1459
BstMAI	GTCTC	8 cut(s)	9, 258, 452, 582, 1041, 1297, 1807, 2024
BstMBI	GATC	7 cut(s)	27, 41, 468, 616, 841, 873, 1456
BstMCI	CGRYCG	1 cut(s)	416
BstNI	CCWGG	6 cut(s)	127, 675, 1161, 1755, 2082, 2145
BstNSI	RCATGY	2 cut(s)	1054, 1361
BstPAI	GACNNNNGTC	1 cut(s)	2163
BstSCI	CCNGG	7 cut(s)	102, 125, 673, 1159, 1753, 2080, 2143
BstSFI	CTRYAG	1 cut(s)	59
BstUI	CGCG	6 cut(s)	147, 162, 352, 535, 717, 1706
BstV2I	GAAGAC	1 cut(s)	1480
BstX2I	RGATCY	1 cut(s)	616
BstYI	RGATCY	1 cut(s)	616
BstZI	CGGCCG	1 cut(s)	413
BsuI	GTATCC	1 cut(s)	168
BsuRI	GGCC	5 cut(s)	107, 415, 1483, 1758, 1829
BtgZI	GCGATG	1 cut(s)	1362
BtsCI	GGATG	3 cut(s)	1153, 1921, 2200
BtsIMutI	CAGTG	5 cut(s)	564, 947, 1552, 1720, 1939
Cac8I	GCNNGC	6 cut(s)	151, 225, 301, 405, 1056, 2139
CciI	TCATGA	1 cut(s)	1963
CfoI	GCGC	5 cut(s)	149, 164, 299, 354, 1167
Cfr10I	RCCGGY	1 cut(s)	1215
CseI	GACGC	3 cut(s)	322, 921, 1824
Csp6I	GTAC	2 cut(s)	1761, 2105
CspAI	ACCGGT	1 cut(s)	1215
CviAII	CATG	7 cut(s)	370, 638, 764, 917, 1051, 1358, 1964
CviQI	GTAC	2 cut(s)	1761, 2105
DdeI	CTNAG	6 cut(s)	78, 435, 987, 1867, 1896, 2028
DpnI	GATC	7 cut(s)	29, 43, 470, 618, 843, 875, 1458
DpnII	GATC	7 cut(s)	27, 41, 468, 616, 841, 873, 1456
DraI	TTTAAA	1 cut(s)	1744
DraIII	CACNNNGTG	1 cut(s)	707
DriI	GACNNNNNGTC	2 cut(s)	271, 274
EaeI	YGGCCR	1 cut(s)	413
EagI	CGGCCG	1 cut(s)	413
Eam1104I	CTCTTC	3 cut(s)	1176, 1671, 1680
Eam1105I	GACNNNNNGTC	2 cut(s)	271, 274
EarI	CTCTTC	3 cut(s)	1176, 1671, 1680
EciI	GGCGGA	1 cut(s)	659
Ecl136II	GAGCTC	1 cut(s)	1798
EclXI	CGGCCG	1 cut(s)	413
Eco24I	GRGCYC	2 cut(s)	57, 1800
Eco31I	GGTCTC	1 cut(s)	1297
Eco32I	GATATC	1 cut(s)	712
Eco47I	GGWCC	7 cut(s)	326, 357, 679, 1157, 1218, 1987, 2165
Eco52I	CGGCCG	1 cut(s)	413
Eco53kI	GAGCTC	1 cut(s)	1798
Eco57I	CTGAAG	4 cut(s)	779, 1329, 1653, 1692
Eco72I	CACGTG	1 cut(s)	551
Eco88I	CYCGRG	1 cut(s)	1000
EcoICRI	GAGCTC	1 cut(s)	1798
EcoNI	CCTNNNNNAGG	1 cut(s)	2148
EcoO109I	RGGNCCY	2 cut(s)	326, 1482
EcoRI	GAATTC	1 cut(s)	971
EcoRII	CCWGG	6 cut(s)	125, 673, 1159, 1753, 2080, 2143
EcoRV	GATATC	1 cut(s)	712
EcoT22I	ATGCAT	1 cut(s)	1912
EcoT38I	GRGCYC	2 cut(s)	57, 1800
Esp3I	CGTCTC	3 cut(s)	258, 452, 1807
FaeI	CATG	7 cut(s)	373, 641, 767, 920, 1054, 1361, 1967
FaqI	GGGAC	1 cut(s)	339
FatI	CATG	7 cut(s)	369, 637, 763, 916, 1050, 1357, 1963
FauI	CCCGC	2 cut(s)	152, 217
FbaI	TGATCA	1 cut(s)	468
FokI	GGATG	2 cut(s)	1160, 1928
FriOI	GRGCYC	2 cut(s)	57, 1800
FspBI	CTAG	7 cut(s)	927, 1028, 1295, 1317, 1623, 1764, 2138
GlaI	GCGC	5 cut(s)	148, 163, 298, 353, 1166
GsaI	CCCAGC	1 cut(s)	35
GsuI	CTGGAG	2 cut(s)	1254, 1784
HaeII	RGCGCY	2 cut(s)	300, 1168
HaeIII	GGCC	5 cut(s)	107, 415, 1483, 1758, 1829
HapII	CCGG	5 cut(s)	50, 104, 1216, 1806, 1880
HgaI	GACGC	3 cut(s)	322, 921, 1824
HhaI	GCGC	5 cut(s)	149, 164, 299, 354, 1167
Hin1I	GRCGYC	1 cut(s)	314
Hin1II	CATG	7 cut(s)	373, 641, 767, 920, 1054, 1361, 1967
Hin6I	GCGC	5 cut(s)	147, 162, 297, 352, 1165
HinP1I	GCGC	5 cut(s)	147, 162, 297, 352, 1165
HincII	GTYRAC	1 cut(s)	232
HindII	GTYRAC	1 cut(s)	232
HindIII	AAGCTT	1 cut(s)	1311
HinfI	GANTC	6 cut(s)	11, 272, 809, 1700, 1871, 1967
HpaII	CCGG	5 cut(s)	50, 104, 1216, 1806, 1880
HphI	GGTGA	3 cut(s)	818, 1380, 1577
Hpy166II	GTNNAC	3 cut(s)	232, 1075, 2105
Hpy188III	TCNNGA	8 cut(s)	8, 694, 869, 877, 1000, 1175, 1271, 1964
Hpy8I	GTNNAC	3 cut(s)	232, 1075, 2105
Hpy99I	CGWCG	4 cut(s)	272, 280, 283, 2165
HpyAV	CCTTC	7 cut(s)	29, 508, 874, 932, 1063, 1628, 2093
HpyCH4III	ACNGT	7 cut(s)	568, 952, 1144, 1491, 1547, 2038, 2165
HpyCH4IV	ACGT	4 cut(s)	550, 796, 1600, 2116
HpyCH4V	TGCA	9 cut(s)	153, 291, 403, 576, 608, 1058, 1376, 1535, 1910
HpyF3I	CTNAG	6 cut(s)	78, 435, 987, 1867, 1896, 2028
HpySE526I	ACGT	4 cut(s)	550, 796, 1600, 2116
Hsp92I	GRCGYC	1 cut(s)	314
Hsp92II	CATG	7 cut(s)	373, 641, 767, 920, 1054, 1361, 1967
HspAI	GCGC	5 cut(s)	147, 162, 297, 352, 1165
Ksp22I	TGATCA	1 cut(s)	468
Kzo9I	GATC	7 cut(s)	27, 41, 468, 616, 841, 873, 1456
LmnI	GCTCC	5 cut(s)	52, 129, 371, 1803, 1882
LweI	GCATC	5 cut(s)	1385, 1522, 1918, 1919, 2179
MaeI	CTAG	7 cut(s)	927, 1028, 1295, 1317, 1623, 1764, 2138
MaeII	ACGT	4 cut(s)	550, 796, 1600, 2116
MaeIII	GTNAC	6 cut(s)	310, 491, 562, 1175, 1189, 1240
MalI	GATC	7 cut(s)	29, 43, 470, 618, 843, 875, 1458
MbiI	CCGCTC	2 cut(s)	170, 366
MboI	GATC	7 cut(s)	27, 41, 468, 616, 841, 873, 1456
MfeI	CAATTG	2 cut(s)	344, 1451
MflI	RGATCY	1 cut(s)	616
MhlI	GDGCHC	2 cut(s)	57, 1800
MlyI	GAGTC	1 cut(s)	281
MmeI	TCCRAC	2 cut(s)	435, 781
Mph1103I	ATGCAT	1 cut(s)	1912
MroXI	GAANNNNTTC	4 cut(s)	732, 910, 995, 1618
MseI	TTAA	1 cut(s)	1743
MslI	CAYNNNNRTG	2 cut(s)	940, 1926
MspA1I	CMGCKG	2 cut(s)	319, 418
MspI	CCGG	5 cut(s)	50, 104, 1216, 1806, 1880
MspR9I	CCNGG	7 cut(s)	104, 127, 675, 1161, 1755, 2082, 2145
MunI	CAATTG	2 cut(s)	344, 1451
Mva1269I	GAATGC	1 cut(s)	775
MvaI	CCWGG	6 cut(s)	127, 675, 1161, 1755, 2082, 2145
MvnI	CGCG	6 cut(s)	147, 162, 352, 535, 717, 1706
NciI	CCSGG	1 cut(s)	104
NdeII	GATC	7 cut(s)	27, 41, 468, 616, 841, 873, 1456
NheI	GCTAGC	1 cut(s)	2137
NlaIII	CATG	7 cut(s)	373, 641, 767, 920, 1054, 1361, 1967
NlaIV	GGNNCC	9 cut(s)	54, 108, 327, 359, 680, 913, 1484, 1878, 1884
NmeAIII	GCCGAG	2 cut(s)	238, 422
NmuCI	GTSAC	4 cut(s)	310, 491, 562, 1175
NsiI	ATGCAT	1 cut(s)	1912
NspI	RCATGY	2 cut(s)	1054, 1361
PaeR7I	CTCGAG	1 cut(s)	1000
PagI	TCATGA	1 cut(s)	1963
PasI	CCCWGGG	1 cut(s)	2081
PciI	ACATGT	1 cut(s)	1357
PcsI	WCGNNNNNNNCGW	1 cut(s)	793
PctI	GAATGC	1 cut(s)	775
PdmI	GAANNNNTTC	4 cut(s)	732, 910, 995, 1618
PfeI	GAWTC	5 cut(s)	11, 809, 1700, 1871, 1967
PflMI	CCANNNNNTGG	1 cut(s)	851
PfoI	TCCNGGA	1 cut(s)	125
PinAI	ACCGGT	1 cut(s)	1215
PleI	GAGTC	1 cut(s)	280
PmaCI	CACGTG	1 cut(s)	551
PmlI	CACGTG	1 cut(s)	551
PpsI	GAGTC	1 cut(s)	280
Ppu21I	YACGTR	1 cut(s)	551
PpuMI	RGGWCCY	1 cut(s)	326
PscI	ACATGT	1 cut(s)	1357
PshAI	GACNNNNGTC	1 cut(s)	2163
Psp124BI	GAGCTC	1 cut(s)	1800
Psp5II	RGGWCCY	1 cut(s)	326
Psp6I	CCWGG	6 cut(s)	125, 673, 1159, 1753, 2080, 2143
PspCI	CACGTG	1 cut(s)	551
PspFI	CCCAGC	1 cut(s)	31
PspGI	CCWGG	6 cut(s)	125, 673, 1159, 1753, 2080, 2143
PspN4I	GGNNCC	9 cut(s)	54, 108, 327, 359, 680, 913, 1484, 1878, 1884
PspPPI	RGGWCCY	1 cut(s)	326
PsuI	RGATCY	1 cut(s)	616
RsaI	GTAC	2 cut(s)	1762, 2106
RsaNI	GTAC	2 cut(s)	1761, 2105
RseI	CAYNNNNRTG	2 cut(s)	940, 1926
SacI	GAGCTC	1 cut(s)	1800
SaqAI	TTAA	1 cut(s)	1743
Sau3AI	GATC	7 cut(s)	27, 41, 468, 616, 841, 873, 1456
SchI	GAGTC	1 cut(s)	281
ScrFI	CCNGG	7 cut(s)	104, 127, 675, 1161, 1755, 2082, 2145
SduI	GDGCHC	2 cut(s)	57, 1800
SfaNI	GCATC	5 cut(s)	1385, 1522, 1918, 1919, 2179
SfcI	CTRYAG	1 cut(s)	59
Sfr274I	CTCGAG	1 cut(s)	1000
SinI	GGWCC	7 cut(s)	326, 357, 679, 1157, 1218, 1987, 2165
SlaI	CTCGAG	1 cut(s)	1000
SmiMI	CAYNNNNRTG	2 cut(s)	940, 1926
SmlI	CTYRAG	2 cut(s)	668, 1000
SmoI	CTYRAG	2 cut(s)	668, 1000
SspI	AATATT	2 cut(s)	427, 1981
SspMI	CTAG	7 cut(s)	927, 1028, 1295, 1317, 1623, 1764, 2138
SstI	GAGCTC	1 cut(s)	1800
StyD4I	CCNGG	7 cut(s)	102, 125, 673, 1159, 1753, 2080, 2143
TaaI	ACNGT	7 cut(s)	568, 952, 1144, 1491, 1547, 2038, 2165
TaiI	ACGT	4 cut(s)	553, 799, 1603, 2119
TaqI	TCGA	6 cut(s)	966, 1001, 1459, 1852, 2097, 2124
TatI	WGTACW	1 cut(s)	2104
TauI	GCSGC	5 cut(s)	167, 170, 319, 352, 418
TfiI	GAWTC	5 cut(s)	11, 809, 1700, 1871, 1967
Tru1I	TTAA	1 cut(s)	1743
Tru9I	TTAA	1 cut(s)	1743
TscAI	CASTG	5 cut(s)	571, 947, 1552, 1720, 1939
TseFI	GTSAC	4 cut(s)	310, 491, 562, 1175
Tsp45I	GTSAC	4 cut(s)	310, 491, 562, 1175
TspGWI	ACGGA	2 cut(s)	671, 1031
TspRI	CASTG	5 cut(s)	571, 947, 1552, 1720, 1939
Van91I	CCANNNNNTGG	1 cut(s)	851
VpaK11BI	GGWCC	7 cut(s)	326, 357, 679, 1157, 1218, 1987, 2165
XagI	CCTNNNNNAGG	1 cut(s)	2148
XapI	RAATTY	3 cut(s)	971, 1345, 1739
XceI	RCATGY	2 cut(s)	1054, 1361
XcmI	CCANNNNNNNNNTGG	1 cut(s)	376
XhoI	CTCGAG	1 cut(s)	1000
XmnI	GAANNNNTTC	4 cut(s)	732, 910, 995, 1618
XspI	CTAG	7 cut(s)	927, 1028, 1295, 1317, 1623, 1764, 2138
Zsp2I	ATGCAT	1 cut(s)	1912

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.