Rw7G002660

WSTF, HB1, Itc1p, MBD9 motif 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0007850
Physical Location & Seq
Reverse (-)
2189361 .. 2195451
6091 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G002660.1

Sequence Viewer

Length: 2232 bp
ATGTCTCTCGAGTCTTCTCCTCCGATCCCGTCCGACCGATCCTCGCCGGAACCCCAGCAACCACCACAACCCCCTCAAAACGACGACGTCGCGGCCACGACGACGACGACAACGACAACAGCCCCGGCCCCCACGCCGCCGCTGTCCCGCAGCAACCGCCCCTCCCGCGCTTGCACCCTACGCGCCGCGGCTAGGTTGCAGCAGCAGCAGCAGTACCAGCACGCCGAGCCGAGGAAGCCGAAGGCGGCGAGGAAGGAGCAGCCGCCGCAGCAGGAGAACGACGAGTCGTCGTCGCCGCAGCAATGCGGGAGCGCCAGCAAGATCGTGACGTCGCTGGTGGACCCGCCCTCGCAGTCGCAATTGCCGCGGTGGACGCTCCGGTCCATGTGGGAATTGGCCTCCGTGCTCAATTTTCTACATGCTTTTCGGCCGCTGTTGAATATACACGCCGAGTTCTCGGCTGAGGAATTGGAGACTGCTTTGATCACACCCAATGATAGCTTGAGTGACGTTCACATTCCCTTGTTGAAGGCGATTCCCCCTGTGACAAGAATGGCACTTACACGTGATACTTGGATAACTGTTTTATGCAGAAAGTTGAGAGACTGGTGGCATTGGGTTGCAGATGGAGATCTACCTATTGTTGCTTCACATGGGGCGGAGATTGAAGTATATAAAACACTTGATCCCGGTGTCCGTGTGGTCATTTTGAAAGCACTTTGTGATATTCGTGTTGAGCAAGAGGATATCCGGAACTATATTGACAATTCACTGAAACATGGTGTCCAGCTTTCCACATTTCGTAAAGAACGCCTTGGGGGTGATTCACATGGAATCTCTTACTGGTATGAAGATGATCCAATTATTGGTTATCGGTTATATCGGGAGATAAGGAAGACTGAGGTGAAGAAAGTAAGAGCAAAGGGTTCCCATGTCCTTCCTAGTACAACATACCAGTGGGAAACAGTTGCAACCAATTTTGATGAATTTCAAGATGTTGGAGAAAAACTTTTCTCCAGTATCAATAGAACAGAGGCTGCTGTAGGAAAAAAGTTGAAAGGTGACATGCTTGTAGAGATTGAGAAGGTTCACAAGAGGAAAGAGAAGTTGCTGAAGAAGCAACACAGACAAGCTCTGCTCCTTGATAATTATGTGTCTGTGGATGGGCTTGGTCCGGGGCGCTCTCTTCGTGACAGAAAACCTGTCACATACACTTTTGATGATTATGACCGGTCAATCAATGAGGCCATCAAGATAACCAAAACGAAACAGCCATCCCCTGAGCCTTTACAGAAACGAGATGTTGTTATGAAACATGAAGCTTCTAGCAATGGTAAATGGAGTGGTACTTCAAATTCCCATGAGCATGTGGGATTTAGCCCACTGTCTCCTAAATCACCTGATTACGAAGACGAAGAAGATGATGTTGAGGAAGATGACAAATCTGAACAAATGGATAGAAGCAATCGGCGAAGACAGAGGCCCCAACGGTATTCTGCAAAAGAATTTGTTGAAGCAGTTTCAGATAATGATGCAGACTTTGACAGTGATGATGAAATAGTTGGTGAAGCTATTTATGATGAAGAATACTTAAAGAAACGTAAGGAGAGGAGAAAGTTTTCTAGTAGCTCTGAAGGAGATGAGGAGTATCGTTGGGAGGAAGAAAATCCTGAAGAGGAGGAAGAGGAGGAGGAAGAAGATTCTGCTAGTGCCAGTGAGGAAAGTGATGAACCTCGAAAGTTTAAGAAACTGCGCGGTCGTCCTAAGGAATTGCCAGGACGTACTAGGAGGGAAGCTAAATTGAGGTCGGTTGATGAGCTCCAGTCAGGTCTAAGACGCAGTAAGAGGGCCACCAGAAATCGTATTGATTATCGGCAGTATGAGTTTTCAGATTCAGATACAGAGCCTATGAAACCTGAGAAGTCAAATGCATCAGATCGACACTCTGATGCAACTGAGAATGGTGATTATTCAATGGAAAGTCAAGATTCAGATGTTAATGATGGTCACCATGAAATGGAAGTTGGTCAGGCTGATCAGGCTGTTGAAAATTACCCAGAAACAGTAGAAAAAGAGGAAAACCAGCCACCTGAAAAATCAAATAGCCCAGGGGAAAATGAAGTTGGAGGTGTACAGAAAAGACGTTTCCTTGACCTAAACGAACTTGCCCCTGGTTCAGGTTTTGACGATGGTCCAAATACGATAATGAAAGATGATGCGGATGATTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDT WHIM1

Protein Analysis

743

Amino Acids

84.74

Weight (kDa)

5.1

Isoelectric Point (pI)

63.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DDT PF02791 134 - 179 8.6e-06 DDT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 379
AatII GACGTC 2 cut(s) 90, 332
AccB7I CCANNNNNTGG 2 cut(s) 866, 2017
AccII CGCG 6 cut(s) 92, 168, 183, 188, 367, 1755
AccIII TCCGGA 1 cut(s) 750
AclWI GGATC 4 cut(s) 19, 33, 680, 851
AcoI YGGCCR 2 cut(s) 93, 428
AcsI RAATTY 3 cut(s) 986, 1354, 1505
AcuI CTGAAG 3 cut(s) 1133, 1653, 1692
AcvI CACGTG 1 cut(s) 566
AcyI GRCGYC 2 cut(s) 87, 329
AdeI CACNNNGTG 1 cut(s) 722
AfaI GTAC 5 cut(s) 215, 946, 1348, 1783, 2133
AfiI CCNNNNNNNGG 5 cut(s) 192, 231, 866, 2017, 2177
AflIII ACRYGT 1 cut(s) 563
AgeI ACCGGT 1 cut(s) 1230
AhdI GACNNNNNGTC 1 cut(s) 286
AjnI CCWGG 3 cut(s) 1774, 2107, 2170
AjuI GAANNNNNNNTTGG 4 cut(s) 2007, 2039, 2106, 2138
AluBI AGCT 8 cut(s) 501, 790, 1133, 1322, 1571, 1629, 1796, 1819
AluI AGCT 8 cut(s) 501, 790, 1133, 1322, 1571, 1629, 1796, 1819
Alw21I GWGCWC 2 cut(s) 408, 1821
Alw26I GTCTC 4 cut(s) 9, 467, 597, 1392
AlwI GGATC 4 cut(s) 19, 33, 680, 851
AlwNI CAGNNNCTG 1 cut(s) 1037
Ama87I CYCGRG 1 cut(s) 8
Aor13HI TCCGGA 1 cut(s) 750
AoxI GGCC 7 cut(s) 93, 126, 396, 428, 1245, 1481, 1848
ApeKI GCWGC 9 cut(s) 150, 199, 202, 205, 208, 259, 268, 298, 1037
ApoI RAATTY 3 cut(s) 986, 1354, 1505
AsiGI ACCGGT 1 cut(s) 1230
Asp700I GAANNNNTTC 1 cut(s) 1618
AspLEI GCGC 5 cut(s) 170, 185, 314, 1182, 1755
AspS9I GGNCC 7 cut(s) 127, 340, 381, 1172, 1482, 1848, 2192
AsuC2I CCSGG 3 cut(s) 125, 690, 1176
AsuHPI GGTGA 7 cut(s) 833, 916, 1073, 1389, 1577, 1976, 2000
AvaI CYCGRG 1 cut(s) 8
AvaII GGWCC 4 cut(s) 340, 381, 1172, 2192
AxyI CCTNAGG 1 cut(s) 1764
BanII GRGCYC 1 cut(s) 1821
BbrPI CACGTG 1 cut(s) 566
BbsI GAAGAC 4 cut(s) 6, 902, 1416, 1480
Bbv12I GWGCWC 2 cut(s) 408, 1821
BbvCI CCTCAGC 1 cut(s) 462
BbvI GCAGC 9 cut(s) 162, 211, 214, 217, 220, 271, 280, 310, 1024
BccI CCATC 6 cut(s) 620, 1157, 1256, 1282, 1997, 2183
BciT130I CCWGG 3 cut(s) 1776, 2109, 2172
BclI TGATCA 2 cut(s) 483, 2035
BcnI CCSGG 3 cut(s) 125, 690, 1176
BcoDI GTCTC 4 cut(s) 9, 467, 597, 1392
BfaI CTAG 6 cut(s) 192, 942, 1326, 1623, 1707, 1785
BfmI CTRYAG 1 cut(s) 1041
BfoI RGCGCY 2 cut(s) 315, 1183
BglII AGATCT 1 cut(s) 631
Bme1390I CCNGG 6 cut(s) 125, 690, 1176, 1776, 2109, 2172
Bme18I GGWCC 4 cut(s) 340, 381, 1172, 2192
BmeRI GACNNNNNGTC 1 cut(s) 286
BmeT110I CYCGRG 1 cut(s) 8
BmgT120I GGNCC 7 cut(s) 127, 340, 381, 1172, 1482, 1848, 2192
BmiI GGNNCC 5 cut(s) 51, 129, 342, 928, 1484
BmrFI CCNGG 6 cut(s) 125, 690, 1176, 1776, 2109, 2172
BmsI GCATC 4 cut(s) 1522, 1939, 1940, 2206
BoxI GACNNNNGTC 1 cut(s) 2190
BpiI GAAGAC 4 cut(s) 6, 902, 1416, 1480
BpmI CTGGAG 2 cut(s) 1000, 1805
Bpu10I CCTNAGC 2 cut(s) 462, 1281
BpuEI CTTGAG 1 cut(s) 523
BpuMI CCSGG 3 cut(s) 125, 690, 1176
BsaAI YACGTR 1 cut(s) 566
BsaBI GATNNNNATC 1 cut(s) 630
BsaHI GRCGYC 2 cut(s) 87, 329
BsaJI CCNNGG 9 cut(s) 123, 186, 230, 365, 814, 1175, 2107, 2108, 2170
BsaWI WCCGGW 3 cut(s) 378, 750, 1230
BsaXI ACNNNNNCTCC 2 cut(s) 146, 176
Bsc4I CCNNNNNNNGG 5 cut(s) 192, 231, 866, 2017, 2177
Bse118I RCCGGY 1 cut(s) 1230
Bse1I ACTGG 6 cut(s) 611, 848, 955, 1017, 1713, 1822
Bse21I CCTNAGG 1 cut(s) 1764
Bse3DI GCAATG 2 cut(s) 308, 1336
Bse8I GATNNNNATC 1 cut(s) 630
BseAI TCCGGA 1 cut(s) 750
BseBI CCWGG 3 cut(s) 1776, 2109, 2172
BseDI CCNNGG 9 cut(s) 123, 186, 230, 365, 814, 1175, 2107, 2108, 2170
BseGI GGATG 3 cut(s) 1168, 1274, 2227
BseJI GATNNNNATC 1 cut(s) 630
BseLI CCNNNNNNNGG 5 cut(s) 192, 231, 866, 2017, 2177
BseMI GCAATG 2 cut(s) 308, 1336
BseMII CTCAG 5 cut(s) 453, 891, 1272, 1908, 1947
BseNI ACTGG 6 cut(s) 611, 848, 955, 1017, 1713, 1822
BseRI GAGGAG 6 cut(s) 9, 1624, 1658, 1691, 1700, 1703
BseX3I CGGCCG 1 cut(s) 428
BseXI GCAGC 9 cut(s) 162, 211, 214, 217, 220, 271, 280, 310, 1024
BseYI CCCAGC 1 cut(s) 54
Bsh1236I CGCG 6 cut(s) 92, 168, 183, 188, 367, 1755
Bsh1285I CGRYCG 3 cut(s) 37, 431, 1759
BshFI GGCC 7 cut(s) 95, 128, 398, 430, 1247, 1483, 1850
BshTI ACCGGT 1 cut(s) 1230
BsiEI CGRYCG 3 cut(s) 37, 431, 1759
BsiHKAI GWGCWC 2 cut(s) 408, 1821
BsiHKCI CYCGRG 1 cut(s) 8
BsiSI CCGG 7 cut(s) 47, 125, 379, 690, 751, 1175, 1231
BslFI GGGAC 1 cut(s) 130
BslI CCNNNNNNNGG 5 cut(s) 192, 231, 866, 2017, 2177
BsmAI GTCTC 4 cut(s) 9, 467, 597, 1392
BsmFI GGGAC 1 cut(s) 130
BsnI GGCC 7 cut(s) 95, 128, 398, 430, 1247, 1483, 1850
BsoBI CYCGRG 1 cut(s) 8
Bsp1286I GDGCHC 2 cut(s) 408, 1821
Bsp13I TCCGGA 1 cut(s) 750
Bsp1407I TGTACA 1 cut(s) 2131
Bsp143I GATC 9 cut(s) 24, 38, 321, 483, 631, 685, 856, 1936, 2035
BspANI GGCC 7 cut(s) 95, 128, 398, 430, 1247, 1483, 1850
BspCNI CTCAG 5 cut(s) 454, 892, 1273, 1909, 1948
BspEI TCCGGA 1 cut(s) 750
BspFNI CGCG 6 cut(s) 92, 168, 183, 188, 367, 1755
BspLI GGNNCC 5 cut(s) 51, 129, 342, 928, 1484
BspPI GGATC 4 cut(s) 19, 33, 680, 851
BsrDI GCAATG 2 cut(s) 308, 1336
BsrFI RCCGGY 1 cut(s) 1230
BsrGI TGTACA 1 cut(s) 2131
BsrI ACTGG 6 cut(s) 611, 848, 955, 1017, 1713, 1822
BssAI RCCGGY 1 cut(s) 1230
BssECI CCNNGG 9 cut(s) 123, 186, 230, 365, 814, 1175, 2107, 2108, 2170
BssMI GATC 9 cut(s) 24, 38, 321, 483, 631, 685, 856, 1936, 2035
BssNI GRCGYC 2 cut(s) 87, 329
BssT1I CCWWGG 1 cut(s) 814
Bst2UI CCWGG 3 cut(s) 1776, 2109, 2172
Bst4CI ACNGT 6 cut(s) 583, 967, 1386, 1491, 1547, 2065
Bst6I CTCTTC 3 cut(s) 1191, 1668, 1677
BstACI GRCGYC 2 cut(s) 87, 329
BstAUI TGTACA 1 cut(s) 2131
BstBAI YACGTR 1 cut(s) 566
BstC8I GCNNGC 3 cut(s) 172, 222, 316
BstDEI CTNAG 7 cut(s) 462, 900, 1281, 1764, 1832, 1917, 1956
BstDSI CCRYGG 2 cut(s) 186, 365
BstEII GGTNACC 1 cut(s) 2006
BstENI CCTNNNNNAGG 1 cut(s) 2175
BstF5I GGATG 3 cut(s) 1168, 1274, 2227
BstFNI CGCG 6 cut(s) 92, 168, 183, 188, 367, 1755
BstH2I RGCGCY 2 cut(s) 315, 1183
BstHHI GCGC 5 cut(s) 170, 185, 314, 1182, 1755
BstKTI GATC 9 cut(s) 27, 41, 324, 486, 634, 688, 859, 1939, 2038
BstMAI GTCTC 4 cut(s) 9, 467, 597, 1392
BstMBI GATC 9 cut(s) 24, 38, 321, 483, 631, 685, 856, 1936, 2035
BstMCI CGRYCG 3 cut(s) 37, 431, 1759
BstNI CCWGG 3 cut(s) 1776, 2109, 2172
BstNSI RCATGY 3 cut(s) 422, 1069, 1370
BstPAI GACNNNNGTC 1 cut(s) 2190
BstPI GGTNACC 1 cut(s) 2006
BstSCI CCNGG 6 cut(s) 123, 688, 1174, 1774, 2107, 2170
BstSFI CTRYAG 1 cut(s) 1041
BstUI CGCG 6 cut(s) 92, 168, 183, 188, 367, 1755
BstV1I GCAGC 9 cut(s) 162, 211, 214, 217, 220, 271, 280, 310, 1024
BstV2I GAAGAC 4 cut(s) 6, 902, 1416, 1480
BstX2I RGATCY 1 cut(s) 631
BstYI RGATCY 1 cut(s) 631
BstZI CGGCCG 1 cut(s) 428
Bsu36I CCTNAGG 1 cut(s) 1764
BsuRI GGCC 7 cut(s) 95, 128, 398, 430, 1247, 1483, 1850
BtgI CCRYGG 2 cut(s) 186, 365
BtsCI GGATG 3 cut(s) 1168, 1274, 2227
BtsIMutI CAGTG 5 cut(s) 770, 962, 1382, 1552, 1720
Cac8I GCNNGC 3 cut(s) 172, 222, 316
CaiI CAGNNNCTG 1 cut(s) 1037
CfoI GCGC 5 cut(s) 170, 185, 314, 1182, 1755
Cfr10I RCCGGY 1 cut(s) 1230
Cfr13I GGNCC 7 cut(s) 127, 340, 381, 1172, 1482, 1848, 2192
Cfr42I CCGCGG 2 cut(s) 189, 368
CseI GACGC 2 cut(s) 382, 1845
Csp6I GTAC 5 cut(s) 214, 945, 1347, 1782, 2132
CspAI ACCGGT 1 cut(s) 1230
CviQI GTAC 5 cut(s) 214, 945, 1347, 1782, 2132
DdeI CTNAG 7 cut(s) 462, 900, 1281, 1764, 1832, 1917, 1956
DpnI GATC 9 cut(s) 26, 40, 323, 485, 633, 687, 858, 1938, 2037
DpnII GATC 9 cut(s) 24, 38, 321, 483, 631, 685, 856, 1936, 2035
DraIII CACNNNGTG 1 cut(s) 722
DrdI GACNNNNNNGTC 1 cut(s) 379
DriI GACNNNNNGTC 1 cut(s) 286
DseDI GACNNNNNNGTC 1 cut(s) 379
EaeI YGGCCR 2 cut(s) 93, 428
EagI CGGCCG 1 cut(s) 428
Eam1104I CTCTTC 3 cut(s) 1191, 1668, 1677
Eam1105I GACNNNNNGTC 1 cut(s) 286
EarI CTCTTC 3 cut(s) 1191, 1668, 1677
EciI GGCGGA 1 cut(s) 674
Ecl136II GAGCTC 1 cut(s) 1819
EclXI CGGCCG 1 cut(s) 428
Eco130I CCWWGG 1 cut(s) 814
Eco24I GRGCYC 1 cut(s) 1821
Eco32I GATATC 1 cut(s) 748
Eco47I GGWCC 4 cut(s) 340, 381, 1172, 2192
Eco52I CGGCCG 1 cut(s) 428
Eco53kI GAGCTC 1 cut(s) 1819
Eco57I CTGAAG 3 cut(s) 1133, 1653, 1692
Eco72I CACGTG 1 cut(s) 566
Eco81I CCTNAGG 1 cut(s) 1764
Eco88I CYCGRG 1 cut(s) 8
Eco91I GGTNACC 1 cut(s) 2006
EcoICRI GAGCTC 1 cut(s) 1819
EcoNI CCTNNNNNAGG 1 cut(s) 2175
EcoO109I RGGNCCY 1 cut(s) 1482
EcoO65I GGTNACC 1 cut(s) 2006
EcoRII CCWGG 3 cut(s) 1774, 2107, 2170
EcoRV GATATC 1 cut(s) 748
EcoT14I CCWWGG 1 cut(s) 814
EcoT22I ATGCAT 1 cut(s) 1933
EcoT38I GRGCYC 1 cut(s) 1821
ErhI CCWWGG 1 cut(s) 814
FalI AAGNNNNNCTT 2 cut(s) 798, 830
FaqI GGGAC 1 cut(s) 130
FauI CCCGC 4 cut(s) 155, 173, 299, 351
FbaI TGATCA 2 cut(s) 483, 2035
FokI GGATG 2 cut(s) 1175, 1261
FriOI GRGCYC 1 cut(s) 1821
FspBI CTAG 6 cut(s) 192, 942, 1326, 1623, 1707, 1785
GlaI GCGC 5 cut(s) 169, 184, 313, 1181, 1754
GsaI CCCAGC 1 cut(s) 58
GsuI CTGGAG 2 cut(s) 1000, 1805
HaeII RGCGCY 2 cut(s) 315, 1183
HaeIII GGCC 7 cut(s) 95, 128, 398, 430, 1247, 1483, 1850
HapII CCGG 7 cut(s) 47, 125, 379, 690, 751, 1175, 1231
HgaI GACGC 2 cut(s) 382, 1845
HhaI GCGC 5 cut(s) 170, 185, 314, 1182, 1755
Hin1I GRCGYC 2 cut(s) 87, 329
Hin6I GCGC 5 cut(s) 168, 183, 312, 1180, 1753
HinP1I GCGC 5 cut(s) 168, 183, 312, 1180, 1753
HindIII AAGCTT 1 cut(s) 1320
HinfI GANTC 8 cut(s) 11, 284, 535, 824, 834, 1700, 1892, 1988
HpaII CCGG 7 cut(s) 47, 125, 379, 690, 751, 1175, 1231
HphI GGTGA 7 cut(s) 833, 916, 1073, 1389, 1577, 1976, 2000
Hpy166II GTNNAC 5 cut(s) 340, 372, 514, 1090, 2132
Hpy188III TCNNGA 9 cut(s) 8, 325, 751, 884, 992, 1190, 1252, 1670, 1985
Hpy8I GTNNAC 5 cut(s) 340, 372, 514, 1090, 2132
HpyAV CCTTC 6 cut(s) 235, 247, 523, 947, 1078, 1628
HpyCH4III ACNGT 6 cut(s) 583, 967, 1386, 1491, 1547, 2065
HpyCH4IV ACGT 7 cut(s) 87, 329, 510, 565, 1600, 1780, 2143
HpyCH4V TGCA 9 cut(s) 174, 199, 591, 623, 971, 1499, 1535, 1931, 1952
HpyF3I CTNAG 7 cut(s) 462, 900, 1281, 1764, 1832, 1917, 1956
HpySE526I ACGT 7 cut(s) 87, 329, 510, 565, 1600, 1780, 2143
Hsp92I GRCGYC 2 cut(s) 87, 329
HspAI GCGC 5 cut(s) 168, 183, 312, 1180, 1753
Kpn2I TCCGGA 1 cut(s) 750
Ksp22I TGATCA 2 cut(s) 483, 2035
KspI CCGCGG 2 cut(s) 189, 368
Kzo9I GATC 9 cut(s) 24, 38, 321, 483, 631, 685, 856, 1936, 2035
LmnI GCTCC 5 cut(s) 256, 309, 381, 1143, 1824
Lsp1109I GCAGC 9 cut(s) 162, 211, 214, 217, 220, 271, 280, 310, 1024
LweI GCATC 4 cut(s) 1522, 1939, 1940, 2206
MaeI CTAG 6 cut(s) 192, 942, 1326, 1623, 1707, 1785
MaeII ACGT 7 cut(s) 87, 329, 510, 565, 1600, 1780, 2143
MaeIII GTNAC 7 cut(s) 325, 506, 544, 1061, 1190, 1204, 2006
MalI GATC 9 cut(s) 26, 40, 323, 485, 633, 687, 858, 1938, 2037
MboI GATC 9 cut(s) 24, 38, 321, 483, 631, 685, 856, 1936, 2035
MfeI CAATTG 1 cut(s) 359
MflI RGATCY 1 cut(s) 631
MhlI GDGCHC 2 cut(s) 408, 1821
MlyI GAGTC 2 cut(s) 20, 293
MmeI TCCRAC 3 cut(s) 57, 979, 2104
Mph1103I ATGCAT 1 cut(s) 1933
MroI TCCGGA 1 cut(s) 750
MroXI GAANNNNTTC 1 cut(s) 1618
MseI TTAA 3 cut(s) 1592, 1743, 1998
MslI CAYNNNNRTG 3 cut(s) 955, 1365, 1947
MspA1I CMGCKG 4 cut(s) 142, 188, 367, 433
MspI CCGG 7 cut(s) 47, 125, 379, 690, 751, 1175, 1231
MspR9I CCNGG 6 cut(s) 125, 690, 1176, 1776, 2109, 2172
MunI CAATTG 1 cut(s) 359
MvaI CCWGG 3 cut(s) 1776, 2109, 2172
MvnI CGCG 6 cut(s) 92, 168, 183, 188, 367, 1755
NciI CCSGG 3 cut(s) 125, 690, 1176
NdeII GATC 9 cut(s) 24, 38, 321, 483, 631, 685, 856, 1936, 2035
NlaIV GGNNCC 5 cut(s) 51, 129, 342, 928, 1484
NmeAIII GCCGAG 4 cut(s) 250, 255, 437, 475
NmuCI GTSAC 7 cut(s) 325, 506, 544, 1061, 1190, 1204, 2006
NsiI ATGCAT 1 cut(s) 1933
NspI RCATGY 3 cut(s) 422, 1069, 1370
PaeR7I CTCGAG 1 cut(s) 8
PasI CCCWGGG 1 cut(s) 2108
PcsI WCGNNNNNNNCGW 2 cut(s) 104, 110
PdmI GAANNNNTTC 1 cut(s) 1618
PfeI GAWTC 6 cut(s) 535, 824, 834, 1700, 1892, 1988
PflFI GACNNNGTC 1 cut(s) 86
PflMI CCANNNNNTGG 2 cut(s) 866, 2017
PinAI ACCGGT 1 cut(s) 1230
PleI GAGTC 2 cut(s) 19, 292
PmaCI CACGTG 1 cut(s) 566
PmlI CACGTG 1 cut(s) 566
PpsI GAGTC 2 cut(s) 19, 292
Ppu21I YACGTR 1 cut(s) 566
PshAI GACNNNNGTC 1 cut(s) 2190
Psp124BI GAGCTC 1 cut(s) 1821
Psp6I CCWGG 3 cut(s) 1774, 2107, 2170
PspCI CACGTG 1 cut(s) 566
PspEI GGTNACC 1 cut(s) 2006
PspFI CCCAGC 1 cut(s) 54
PspGI CCWGG 3 cut(s) 1774, 2107, 2170
PspN4I GGNNCC 5 cut(s) 51, 129, 342, 928, 1484
PspPI GGNCC 7 cut(s) 127, 340, 381, 1172, 1482, 1848, 2192
PstNI CAGNNNCTG 1 cut(s) 1037
PsuI RGATCY 1 cut(s) 631
PsyI GACNNNGTC 1 cut(s) 86
RsaI GTAC 5 cut(s) 215, 946, 1348, 1783, 2133
RsaNI GTAC 5 cut(s) 214, 945, 1347, 1782, 2132
RseI CAYNNNNRTG 3 cut(s) 955, 1365, 1947
SacI GAGCTC 1 cut(s) 1821
SacII CCGCGG 2 cut(s) 189, 368
SaqAI TTAA 3 cut(s) 1592, 1743, 1998
Sau3AI GATC 9 cut(s) 24, 38, 321, 483, 631, 685, 856, 1936, 2035
Sau96I GGNCC 7 cut(s) 127, 340, 381, 1172, 1482, 1848, 2192
SchI GAGTC 2 cut(s) 20, 293
ScrFI CCNGG 6 cut(s) 125, 690, 1176, 1776, 2109, 2172
SduI GDGCHC 2 cut(s) 408, 1821
SfaNI GCATC 4 cut(s) 1522, 1939, 1940, 2206
SfcI CTRYAG 1 cut(s) 1041
Sfr274I CTCGAG 1 cut(s) 8
Sfr303I CCGCGG 2 cut(s) 189, 368
SgrBI CCGCGG 2 cut(s) 189, 368
SinI GGWCC 4 cut(s) 340, 381, 1172, 2192
SlaI CTCGAG 1 cut(s) 8
SmiMI CAYNNNNRTG 3 cut(s) 955, 1365, 1947
SmlI CTYRAG 2 cut(s) 8, 502
SmoI CTYRAG 2 cut(s) 8, 502
SspMI CTAG 6 cut(s) 192, 942, 1326, 1623, 1707, 1785
SstI GAGCTC 1 cut(s) 1821
StyD4I CCNGG 6 cut(s) 123, 688, 1174, 1774, 2107, 2170
StyI CCWWGG 1 cut(s) 814
TaaI ACNGT 6 cut(s) 583, 967, 1386, 1491, 1547, 2065
TaiI ACGT 7 cut(s) 90, 332, 513, 568, 1603, 1783, 2146
TaqI TCGA 3 cut(s) 9, 1735, 1939
TaqII GACCGA 1 cut(s) 51
TatI WGTACW 2 cut(s) 944, 2131
TfiI GAWTC 6 cut(s) 535, 824, 834, 1700, 1892, 1988
Tru1I TTAA 3 cut(s) 1592, 1743, 1998
Tru9I TTAA 3 cut(s) 1592, 1743, 1998
TscAI CASTG 5 cut(s) 777, 962, 1389, 1552, 1720
TseFI GTSAC 7 cut(s) 325, 506, 544, 1061, 1190, 1204, 2006
TseI GCWGC 9 cut(s) 150, 199, 202, 205, 208, 259, 268, 298, 1037
Tsp45I GTSAC 7 cut(s) 325, 506, 544, 1061, 1190, 1204, 2006
TspGWI ACGGA 2 cut(s) 391, 686
TspRI CASTG 5 cut(s) 777, 962, 1389, 1552, 1720
Tth111I GACNNNGTC 1 cut(s) 86
Van91I CCANNNNNTGG 2 cut(s) 866, 2017
VpaK11BI GGWCC 4 cut(s) 340, 381, 1172, 2192
XagI CCTNNNNNAGG 1 cut(s) 2175
XapI RAATTY 3 cut(s) 986, 1354, 1505
XceI RCATGY 3 cut(s) 422, 1069, 1370
XcmI CCANNNNNNNNNTGG 1 cut(s) 391
XhoI CTCGAG 1 cut(s) 8
XmnI GAANNNNTTC 1 cut(s) 1618
XspI CTAG 6 cut(s) 192, 942, 1326, 1623, 1707, 1785
ZraI GACGTC 2 cut(s) 88, 330
Zsp2I ATGCAT 1 cut(s) 1933
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.