Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8416195.1

Orthogroup ID

OG0007850

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 845

Gene Structure 845 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8416195.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 769 bp

caatcggcgaagacagaggccccaacggtattctgcaaaagaatttgttgaagcagtttcagataatgatgcagactttgacagtgatgatgaaatagttggtgaagctatttatgatgaagaatacttaaagaaacgtaaggagaggagaaagttttctagtagctctgaaggagatgaggagtatcgttgggaggaagaaaatcctgaagaggaggaagaggaggaggaagaagattctgctagtgccagtgaagaaagtgatgaacctcgaaagtttaagaaactgcgcggtcgtcctaaggaattgccaggacgtactaggagggaagctaaattgaggtcggttgatgagctccagtcaggtctaagacgcagtaagagggccaccagaaatcgtattgattatcggcagtatgagttttcagattcagatacagagcctatgaaacctgagaagtcaaatgcatcagatcgacactctgatgcaactgagaatggtgattattcaatggaaagtcaagattcagatgttaatgatggtcaccatgaaatggaagttggtcaggctgatcaggctgttgaaaattacccagaaacagtagaaaaagaggaaaaccagccacctgaaaaatcaaatagcccaggggaaaatgaagttggaggtgtacagaaaagacgtttccttgacctaaacgaacttgcccctggttcaggttttgacgatggtccaaatacgataatgaaagatgatgcggatgatttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDT WHIM1

Protein Analysis

255

Amino Acids

29.51

Weight (kDa)

4.53

Isoelectric Point (pI)

74.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18950 AT1G18950 AT1G18950
fragaria_vesca	FvH4_5g15860 FvH4_5g15860 FvH4_5g15860
malus_domestica	MD06G1185100.v1.1 MD14G1191000.v1.1
prunus_persica	Prupe.5G183900_v2.0.a1 Prupe.5G183900_v2.0.a1
pyrus_communis	pycom06g16430 pycom14g15870
rosa_chinensis	RchiOBHm_Chr7g0180231
rosa_laevigata	RLG00000005283
rosa_multiflora	Rmu_co8416195.1_g000001 Rmu_sc0002953.1_g000006 Rmu_sc0011963.1_g000009
rosa_roxburghii	Rroxscaffold_3G00273040
rosa_rugosa	Rorug06G0431700
rosa_samantha	Rh7AG031900 Rh7BG032000 Rh7CG033800 Rh7DG032300
rosa_wichuraiana	Rw7G002660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	554
AccII	CGCG	1 cut(s)	292
AciI	CCGC	2 cut(s)	292, 756
AcsI	RAATTY	1 cut(s)	42
AcuI	CTGAAG	2 cut(s)	190, 229
AfaI	GTAC	2 cut(s)	320, 670
AfiI	CCNNNNNNNGG	2 cut(s)	554, 714
AgsI	TTSAA	3 cut(s)	51, 511, 585
AjnI	CCWGG	3 cut(s)	311, 644, 707
AjuI	GAANNNNNNNTTGG	4 cut(s)	544, 576, 643, 675
AluBI	AGCT	4 cut(s)	108, 166, 333, 356
AluI	AGCT	4 cut(s)	108, 166, 333, 356
Alw21I	GWGCWC	1 cut(s)	358
AoxI	GGCC	2 cut(s)	18, 385
ApoI	RAATTY	1 cut(s)	42
Asp700I	GAANNNNTTC	1 cut(s)	155
AspLEI	GCGC	1 cut(s)	292
AspS9I	GGNCC	3 cut(s)	19, 385, 729
AsuHPI	GGTGA	3 cut(s)	114, 513, 537
AvaII	GGWCC	1 cut(s)	729
AxyI	CCTNAGG	1 cut(s)	301
BanII	GRGCYC	1 cut(s)	358
BbsI	GAAGAC	1 cut(s)	17
Bbv12I	GWGCWC	1 cut(s)	358
BccI	CCATC	2 cut(s)	534, 720
BciT130I	CCWGG	3 cut(s)	313, 646, 709
BclI	TGATCA	1 cut(s)	572
BfaI	CTAG	3 cut(s)	160, 244, 322
Bme1390I	CCNGG	3 cut(s)	313, 646, 709
Bme18I	GGWCC	1 cut(s)	729
BmgT120I	GGNCC	3 cut(s)	19, 385, 729
BmiI	GGNNCC	1 cut(s)	21
BmrFI	CCNGG	3 cut(s)	313, 646, 709
BmsI	GCATC	4 cut(s)	59, 476, 477, 743
BoxI	GACNNNNGTC	1 cut(s)	727
BpiI	GAAGAC	1 cut(s)	17
BpmI	CTGGAG	1 cut(s)	342
BsaJI	CCNNGG	3 cut(s)	644, 645, 707
Bsc4I	CCNNNNNNNGG	2 cut(s)	554, 714
Bse1I	ACTGG	2 cut(s)	250, 359
Bse21I	CCTNAGG	1 cut(s)	301
BseBI	CCWGG	3 cut(s)	313, 646, 709
BseDI	CCNNGG	3 cut(s)	644, 645, 707
BseGI	GGATG	1 cut(s)	764
BseLI	CCNNNNNNNGG	2 cut(s)	554, 714
BseMII	CTCAG	2 cut(s)	445, 484
BseNI	ACTGG	2 cut(s)	250, 359
BseRI	GAGGAG	5 cut(s)	161, 195, 228, 237, 240
Bsh1236I	CGCG	1 cut(s)	292
Bsh1285I	CGRYCG	1 cut(s)	296
BshFI	GGCC	2 cut(s)	20, 387
BsiEI	CGRYCG	1 cut(s)	296
BsiHKAI	GWGCWC	1 cut(s)	358
BslI	CCNNNNNNNGG	2 cut(s)	554, 714
BsnI	GGCC	2 cut(s)	20, 387
Bsp1286I	GDGCHC	1 cut(s)	358
Bsp1407I	TGTACA	1 cut(s)	668
Bsp143I	GATC	2 cut(s)	473, 572
BspACI	CCGC	2 cut(s)	292, 756
BspANI	GGCC	2 cut(s)	20, 387
BspCNI	CTCAG	2 cut(s)	446, 485
BspFNI	CGCG	1 cut(s)	292
BspLI	GGNNCC	1 cut(s)	21
BsrGI	TGTACA	1 cut(s)	668
BsrI	ACTGG	2 cut(s)	250, 359
BssECI	CCNNGG	3 cut(s)	644, 645, 707
BssMI	GATC	2 cut(s)	473, 572
Bst2UI	CCWGG	3 cut(s)	313, 646, 709
Bst4CI	ACNGT	3 cut(s)	28, 84, 602
Bst6I	CTCTTC	2 cut(s)	205, 214
BstAUI	TGTACA	1 cut(s)	668
BstDEI	CTNAG	4 cut(s)	301, 369, 454, 493
BstEII	GGTNACC	1 cut(s)	543
BstENI	CCTNNNNNAGG	1 cut(s)	712
BstF5I	GGATG	1 cut(s)	764
BstFNI	CGCG	1 cut(s)	292
BstHHI	GCGC	1 cut(s)	292
BstKTI	GATC	2 cut(s)	476, 575
BstMBI	GATC	2 cut(s)	473, 572
BstMCI	CGRYCG	1 cut(s)	296
BstMWI	GCNNNNNNNGC	1 cut(s)	576
BstNI	CCWGG	3 cut(s)	313, 646, 709
BstPAI	GACNNNNGTC	1 cut(s)	727
BstPI	GGTNACC	1 cut(s)	543
BstSCI	CCNGG	3 cut(s)	311, 644, 707
BstUI	CGCG	1 cut(s)	292
BstV2I	GAAGAC	1 cut(s)	17
Bsu36I	CCTNAGG	1 cut(s)	301
BsuRI	GGCC	2 cut(s)	20, 387
BtsCI	GGATG	1 cut(s)	764
BtsIMutI	CAGTG	2 cut(s)	89, 257
CfoI	GCGC	1 cut(s)	292
Cfr13I	GGNCC	3 cut(s)	19, 385, 729
CseI	GACGC	1 cut(s)	382
Csp6I	GTAC	2 cut(s)	319, 669
CviAII	CATG	1 cut(s)	549
CviQI	GTAC	2 cut(s)	319, 669
DdeI	CTNAG	4 cut(s)	301, 369, 454, 493
DpnI	GATC	2 cut(s)	475, 574
DpnII	GATC	2 cut(s)	473, 572
Eam1104I	CTCTTC	2 cut(s)	205, 214
EarI	CTCTTC	2 cut(s)	205, 214
Ecl136II	GAGCTC	1 cut(s)	356
Eco24I	GRGCYC	1 cut(s)	358
Eco47I	GGWCC	1 cut(s)	729
Eco53kI	GAGCTC	1 cut(s)	356
Eco57I	CTGAAG	2 cut(s)	190, 229
Eco81I	CCTNAGG	1 cut(s)	301
Eco91I	GGTNACC	1 cut(s)	543
EcoICRI	GAGCTC	1 cut(s)	356
EcoNI	CCTNNNNNAGG	1 cut(s)	712
EcoO109I	RGGNCCY	1 cut(s)	19
EcoO65I	GGTNACC	1 cut(s)	543
EcoRII	CCWGG	3 cut(s)	311, 644, 707
EcoT22I	ATGCAT	1 cut(s)	470
EcoT38I	GRGCYC	1 cut(s)	358
FaeI	CATG	1 cut(s)	552
FaiI	YATR	4 cut(s)	115, 418, 447, 550
FatI	CATG	1 cut(s)	548
FbaI	TGATCA	1 cut(s)	572
FriOI	GRGCYC	1 cut(s)	358
FspBI	CTAG	3 cut(s)	160, 244, 322
GlaI	GCGC	1 cut(s)	291
GsuI	CTGGAG	1 cut(s)	342
HaeIII	GGCC	2 cut(s)	20, 387
HgaI	GACGC	1 cut(s)	382
HhaI	GCGC	1 cut(s)	292
Hin1II	CATG	1 cut(s)	552
Hin6I	GCGC	1 cut(s)	290
HinP1I	GCGC	1 cut(s)	290
HinfI	GANTC	3 cut(s)	237, 429, 525
HphI	GGTGA	3 cut(s)	114, 513, 537
Hpy166II	GTNNAC	1 cut(s)	669
Hpy188I	TCNGA	7 cut(s)	62, 170, 428, 434, 473, 485, 530
Hpy188III	TCNNGA	2 cut(s)	207, 522
Hpy8I	GTNNAC	1 cut(s)	669
HpyAV	CCTTC	1 cut(s)	165
HpyCH4III	ACNGT	3 cut(s)	28, 84, 602
HpyCH4IV	ACGT	3 cut(s)	137, 317, 680
HpyCH4V	TGCA	4 cut(s)	36, 72, 468, 489
HpyF10VI	GCNNNNNNNGC	1 cut(s)	576
HpyF3I	CTNAG	4 cut(s)	301, 369, 454, 493
HpySE526I	ACGT	3 cut(s)	137, 317, 680
Hsp92II	CATG	1 cut(s)	552
HspAI	GCGC	1 cut(s)	290
Ksp22I	TGATCA	1 cut(s)	572
Kzo9I	GATC	2 cut(s)	473, 572
LmnI	GCTCC	1 cut(s)	361
LweI	GCATC	4 cut(s)	59, 476, 477, 743
MaeI	CTAG	3 cut(s)	160, 244, 322
MaeII	ACGT	3 cut(s)	137, 317, 680
MaeIII	GTNAC	1 cut(s)	543
MalI	GATC	2 cut(s)	475, 574
MboI	GATC	2 cut(s)	473, 572
MboII	GAAGA	8 cut(s)	22, 132, 210, 222, 231, 243, 246, 267
MhlI	GDGCHC	1 cut(s)	358
MluCI	AATT	4 cut(s)	42, 306, 336, 587
MmeI	TCCRAC	1 cut(s)	641
Mph1103I	ATGCAT	1 cut(s)	470
MroXI	GAANNNNTTC	1 cut(s)	155
MseI	TTAA	3 cut(s)	129, 280, 535
MslI	CAYNNNNRTG	1 cut(s)	484
MspR9I	CCNGG	3 cut(s)	313, 646, 709
MvaI	CCWGG	3 cut(s)	313, 646, 709
MvnI	CGCG	1 cut(s)	292
MwoI	GCNNNNNNNGC	1 cut(s)	576
NdeII	GATC	2 cut(s)	473, 572
NlaIII	CATG	1 cut(s)	552
NlaIV	GGNNCC	1 cut(s)	21
NmuCI	GTSAC	1 cut(s)	543
NsiI	ATGCAT	1 cut(s)	470
PasI	CCCWGGG	1 cut(s)	645
PdmI	GAANNNNTTC	1 cut(s)	155
PfeI	GAWTC	3 cut(s)	237, 429, 525
PflMI	CCANNNNNTGG	1 cut(s)	554
PshAI	GACNNNNGTC	1 cut(s)	727
Psp124BI	GAGCTC	1 cut(s)	358
Psp6I	CCWGG	3 cut(s)	311, 644, 707
PspEI	GGTNACC	1 cut(s)	543
PspGI	CCWGG	3 cut(s)	311, 644, 707
PspN4I	GGNNCC	1 cut(s)	21
PspPI	GGNCC	3 cut(s)	19, 385, 729
RsaI	GTAC	2 cut(s)	320, 670
RsaNI	GTAC	2 cut(s)	319, 669
RseI	CAYNNNNRTG	1 cut(s)	484
SacI	GAGCTC	1 cut(s)	358
SaqAI	TTAA	3 cut(s)	129, 280, 535
Sau3AI	GATC	2 cut(s)	473, 572
Sau96I	GGNCC	3 cut(s)	19, 385, 729
ScrFI	CCNGG	3 cut(s)	313, 646, 709
SduI	GDGCHC	1 cut(s)	358
SfaNI	GCATC	4 cut(s)	59, 476, 477, 743
SinI	GGWCC	1 cut(s)	729
SmiMI	CAYNNNNRTG	1 cut(s)	484
Sse9I	AATT	4 cut(s)	42, 306, 336, 587
SsiI	CCGC	2 cut(s)	292, 756
SspMI	CTAG	3 cut(s)	160, 244, 322
SstI	GAGCTC	1 cut(s)	358
StyD4I	CCNGG	3 cut(s)	311, 644, 707
TaaI	ACNGT	3 cut(s)	28, 84, 602
TaiI	ACGT	3 cut(s)	140, 320, 683
TaqI	TCGA	2 cut(s)	272, 476
TasI	AATT	4 cut(s)	42, 306, 336, 587
TatI	WGTACW	1 cut(s)	668
TfiI	GAWTC	3 cut(s)	237, 429, 525
Tru1I	TTAA	3 cut(s)	129, 280, 535
Tru9I	TTAA	3 cut(s)	129, 280, 535
TscAI	CASTG	2 cut(s)	89, 257
TseFI	GTSAC	1 cut(s)	543
Tsp45I	GTSAC	1 cut(s)	543
TspDTI	ATGAA	7 cut(s)	106, 133, 280, 462, 565, 670, 759
TspRI	CASTG	2 cut(s)	89, 257
Van91I	CCANNNNNTGG	1 cut(s)	554
VpaK11BI	GGWCC	1 cut(s)	729
XagI	CCTNNNNNAGG	1 cut(s)	712
XapI	RAATTY	1 cut(s)	42
XmnI	GAANNNNTTC	1 cut(s)	155
XspI	CTAG	3 cut(s)	160, 244, 322
Zsp2I	ATGCAT	1 cut(s)	470

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.