Rroxscaffold_3G00273040

WSTF, HB1, Itc1p, MBD9 motif 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0007850
Physical Location & Seq
Forward (+)
64954240 .. 64960406
6167 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00273040.1

Sequence Viewer

Length: 2250 bp
ATGTCTCTCGAGTCTTCTCCTCCGATCCCGTCCGACCGATCCTCGCCGGAACCCCAACAACAACCACAACCCGCTCAAAACGACGACGTCGCGGCCACAACGACAACGACAACGACAACGACATCATCAACAGCCCCGGCCCCCACGCCGCCGCTGTCCCGCAGCAACCGCCCCTCCCGCGCTTGCACCCTACGCGCCGCGGCTAGGTTGCGGCAGCAGTACCAGCAGCAGCACCAGCACGCCGAGCCGAGGAAGCCGAAGGCGGCGAGGAAGGAGCAGCCGCCGCAGCAGGAGAACGACGAGTCGTCGTCGCCGCAGCAATGCGGGAGCGCCAGCAAGATCGTGACGTCGCTTGTGGACCCGCCCTCGCCGTCGCAATTGCCGCGGTGGACGCTCCGGTCCATGTGGGAATTGGCCTCCGTGCTCAATTTTCTACATGCTTTTCGGCCGCTGTTGAATATACATGCCGAGTTCTCGGCTGAGGAATTGGAGACTGCTTTGATCACACCCAATGATAGCTTGAGTGACATTCACATTCCCTTGTTGAAGGCGATTCCCCCTGTGACGAGAATGGCACTTACACGTGATACTTGGATAACTGTTTTATGCAGAAAGTTGAGAGACTGGTGGCATTGGGTTGCAGATGGAGATCTACCTATTGTTGCTTCACATGGGGCGGAGATTGAAGTATATAAAACACTTGATCCCGGTGTCCGTGTGGTCATTTTGAAAGCACTTTGTGATATTCGTGTTGAGCAAGAGGATATCCGGAACTATATTGACAATTCACTGAAACATGGTTTCCAGCTTTCCACATTTCGTAAAGAACGCCTTGGGGGTGATTCACATGGAATCTCTTACTGGTATGAAGATGATCCAATTATTGGTTATCGGTTATATCGGGAGATAAGGAAGACTGAGGTGAAGAAAGTAAGAGCAAAGGGTTCCCATGTCCTTCCTAGTACAACATACCAGTGGGAAACAGTTGCAACCAATTTTGATGAATTTCAAGATGTTGGAGAAAAACTTTTCTCCAGTATCAATAGAACAGAGGCTGCTGTAGGAAAAAAGTTGAAAGGTGACATGCTTTTAGAGATTGAGAAGGTTCACAAGAGGAAAGAGAAGTTGCTGAAGAAGCAACACAGACAAGCTCTACTCCTTGATAATTATGTGTCTGTGGATGGGCTTGGTCCGGGGCGCTCTCTTCGTGACAGAAAACCTGTCACATACACTTTTGATGATTATGACCGGTCGATCAATGAGGCCATCAAGATAACCAAAACGAAACAGCCATCCCCCGAGCCTTTACAGAAACGAGATGTTGTTATGAAACATGAAGCTTCTAGCAATGGTAAATGGAGTAGTACTTCAAATTCCCATGAGCATGTGGGATTTAGCCCTCTGTCTCCTAAATCACCTGATTATGAAGACGAAGAAGATGATGTTGAGGAAGATGACAAATCTGAACAAATGGACAGAAGCAATCGGCGAAGACAGAGGCCCCAACGGTATTCTGCAAAAGAATTTGTTGAAGCAGTTTCAGATAATGATGCAGACTTTGACAGTGATGATGAAATAGTTGGTGAAGCTATTTATGATGAAGAATACTTAAAGAAACGTAAGGAGAGGAGAAAGTTTTCTAGTAGCTCTGAAGGAGATGAGGAGTATCGTTGGGAGGAAGAAAATCCTGAAGAGGAGGAAGAGGAGGAAGAAGAAGATTCTGCTAGTGCCAGTGAGGAAAGTGATGAACCTCGAAAGTTTAAGAAACTGCGCGGTCGTCCTAAGGAATTGCCAGGACGTACTAGGAGGGAAGCTAAATTGAGGTCGGTTGATGAGCTCCAGTCAGGTCTAAGACGCAGTAAGAGGGCCACTAGAAATCGTATTGATTATCGGCAGTATGAGTTTTCAGATTCAGATACAGAGCCTATGAAACCTGAGAAGTCAAATGCATCAGATCGACACTCTGATGCAACTGAGAATGGTGACTATTCAATGGAAAGTCAAGATTCAGATGTTAATGATGGTCACCATGAAATGGAAGTTGGTCAGGCTGATCAGGCTGTTGAAAATTACCCAGAAACAGTAGAAAAAGAGGAAAACCAGCCACCTGAAAAATCAAATAGCCCAGGGGAAAATGAAGTCGGAGGTGTACAGAAAAGACGTTTCCTTGACCTAAATGAACTTGCCCCTGGTTCAGGTTTTGACGATGGTCCAAATACGATAATGAAAGATGATGCGGATGATTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDT WHIM1

Protein Analysis

749

Amino Acids

85.49

Weight (kDa)

5.14

Isoelectric Point (pI)

63.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DDT PF02791 140 - 185 4.7e-06 DDT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 397
AatII GACGTC 2 cut(s) 90, 350
AccB7I CCANNNNNTGG 2 cut(s) 884, 2035
AccBSI CCGCTC 1 cut(s) 74
AccII CGCG 6 cut(s) 92, 180, 195, 200, 385, 1773
AccIII TCCGGA 1 cut(s) 768
AclWI GGATC 4 cut(s) 19, 33, 698, 869
AcoI YGGCCR 2 cut(s) 93, 446
AcsI RAATTY 3 cut(s) 1004, 1372, 1523
AcuI CTGAAG 3 cut(s) 1151, 1671, 1710
AcvI CACGTG 1 cut(s) 584
AcyI GRCGYC 2 cut(s) 87, 347
AdeI CACNNNGTG 1 cut(s) 740
AfaI GTAC 5 cut(s) 221, 964, 1366, 1801, 2151
AfiI CCNNNNNNNGG 5 cut(s) 204, 249, 884, 2035, 2195
AflIII ACRYGT 1 cut(s) 581
AgeI ACCGGT 1 cut(s) 1248
AhdI GACNNNNNGTC 1 cut(s) 304
AjnI CCWGG 3 cut(s) 1792, 2125, 2188
AjuI GAANNNNNNNTTGG 2 cut(s) 2025, 2057
AluBI AGCT 8 cut(s) 519, 808, 1151, 1340, 1589, 1647, 1814, 1837
AluI AGCT 8 cut(s) 519, 808, 1151, 1340, 1589, 1647, 1814, 1837
Alw21I GWGCWC 2 cut(s) 426, 1839
Alw26I GTCTC 4 cut(s) 9, 485, 615, 1410
AlwI GGATC 4 cut(s) 19, 33, 698, 869
AlwNI CAGNNNCTG 1 cut(s) 1055
Ama87I CYCGRG 2 cut(s) 8, 1298
Aor13HI TCCGGA 1 cut(s) 768
AoxI GGCC 7 cut(s) 93, 138, 414, 446, 1263, 1499, 1866
ApeKI GCWGC 8 cut(s) 162, 214, 226, 229, 277, 286, 316, 1055
ApoI RAATTY 3 cut(s) 1004, 1372, 1523
AsiGI ACCGGT 1 cut(s) 1248
Asp700I GAANNNNTTC 1 cut(s) 1636
AspLEI GCGC 5 cut(s) 182, 197, 332, 1200, 1773
AspS9I GGNCC 7 cut(s) 139, 358, 399, 1190, 1500, 1866, 2210
AsuC2I CCSGG 3 cut(s) 137, 708, 1194
AsuHPI GGTGA 7 cut(s) 851, 934, 1091, 1407, 1595, 1994, 2018
AvaI CYCGRG 2 cut(s) 8, 1298
AvaII GGWCC 4 cut(s) 358, 399, 1190, 2210
AxyI CCTNAGG 1 cut(s) 1782
BanII GRGCYC 1 cut(s) 1839
BbrPI CACGTG 1 cut(s) 584
BbsI GAAGAC 4 cut(s) 6, 920, 1434, 1498
Bbv12I GWGCWC 2 cut(s) 426, 1839
BbvCI CCTCAGC 1 cut(s) 480
BbvI GCAGC 8 cut(s) 174, 226, 238, 241, 289, 298, 328, 1042
BccI CCATC 6 cut(s) 638, 1175, 1274, 1300, 2015, 2201
BceAI ACGGC 1 cut(s) 355
BciT130I CCWGG 3 cut(s) 1794, 2127, 2190
BclI TGATCA 2 cut(s) 501, 2053
BcnI CCSGG 3 cut(s) 137, 708, 1194
BcoDI GTCTC 4 cut(s) 9, 485, 615, 1410
BfaI CTAG 7 cut(s) 204, 960, 1344, 1641, 1725, 1803, 1872
BfmI CTRYAG 1 cut(s) 1059
BfoI RGCGCY 2 cut(s) 333, 1201
BglII AGATCT 1 cut(s) 649
BmcAI AGTACT 1 cut(s) 1366
Bme1390I CCNGG 6 cut(s) 137, 708, 1194, 1794, 2127, 2190
Bme18I GGWCC 4 cut(s) 358, 399, 1190, 2210
BmeRI GACNNNNNGTC 1 cut(s) 304
BmeT110I CYCGRG 2 cut(s) 8, 1298
BmgT120I GGNCC 7 cut(s) 139, 358, 399, 1190, 1500, 1866, 2210
BmiI GGNNCC 5 cut(s) 51, 141, 360, 946, 1502
BmrFI CCNGG 6 cut(s) 137, 708, 1194, 1794, 2127, 2190
BmsI GCATC 4 cut(s) 1540, 1957, 1958, 2224
BoxI GACNNNNGTC 1 cut(s) 2208
BpiI GAAGAC 4 cut(s) 6, 920, 1434, 1498
BpmI CTGGAG 2 cut(s) 1018, 1823
Bpu10I CCTNAGC 1 cut(s) 480
BpuEI CTTGAG 1 cut(s) 541
BpuMI CCSGG 3 cut(s) 137, 708, 1194
BsaAI YACGTR 1 cut(s) 584
BsaBI GATNNNNATC 1 cut(s) 648
BsaHI GRCGYC 2 cut(s) 87, 347
BsaJI CCNNGG 9 cut(s) 135, 198, 248, 383, 832, 1193, 2125, 2126, 2188
BsaWI WCCGGW 3 cut(s) 396, 768, 1248
BsaXI ACNNNNNCTCC 2 cut(s) 158, 188
Bsc4I CCNNNNNNNGG 5 cut(s) 204, 249, 884, 2035, 2195
Bse118I RCCGGY 1 cut(s) 1248
Bse1I ACTGG 6 cut(s) 629, 866, 973, 1035, 1731, 1840
Bse21I CCTNAGG 1 cut(s) 1782
Bse3DI GCAATG 2 cut(s) 326, 1354
Bse8I GATNNNNATC 1 cut(s) 648
BseAI TCCGGA 1 cut(s) 768
BseBI CCWGG 3 cut(s) 1794, 2127, 2190
BseDI CCNNGG 9 cut(s) 135, 198, 248, 383, 832, 1193, 2125, 2126, 2188
BseGI GGATG 3 cut(s) 1186, 1292, 2245
BseJI GATNNNNATC 1 cut(s) 648
BseLI CCNNNNNNNGG 5 cut(s) 204, 249, 884, 2035, 2195
BseMI GCAATG 2 cut(s) 326, 1354
BseMII CTCAG 4 cut(s) 471, 909, 1926, 1965
BseNI ACTGG 6 cut(s) 629, 866, 973, 1035, 1731, 1840
BseRI GAGGAG 5 cut(s) 9, 1642, 1676, 1709, 1718
BseX3I CGGCCG 1 cut(s) 446
BseXI GCAGC 8 cut(s) 174, 226, 238, 241, 289, 298, 328, 1042
Bsh1236I CGCG 6 cut(s) 92, 180, 195, 200, 385, 1773
Bsh1285I CGRYCG 4 cut(s) 37, 449, 1253, 1777
BshFI GGCC 7 cut(s) 95, 140, 416, 448, 1265, 1501, 1868
BshTI ACCGGT 1 cut(s) 1248
BsiEI CGRYCG 4 cut(s) 37, 449, 1253, 1777
BsiHKAI GWGCWC 2 cut(s) 426, 1839
BsiHKCI CYCGRG 2 cut(s) 8, 1298
BsiSI CCGG 7 cut(s) 47, 137, 397, 708, 769, 1193, 1249
BslFI GGGAC 1 cut(s) 142
BslI CCNNNNNNNGG 5 cut(s) 204, 249, 884, 2035, 2195
BsmAI GTCTC 4 cut(s) 9, 485, 615, 1410
BsmFI GGGAC 1 cut(s) 142
BsnI GGCC 7 cut(s) 95, 140, 416, 448, 1265, 1501, 1868
BsoBI CYCGRG 2 cut(s) 8, 1298
Bsp1286I GDGCHC 2 cut(s) 426, 1839
Bsp13I TCCGGA 1 cut(s) 768
Bsp1407I TGTACA 1 cut(s) 2149
BspANI GGCC 7 cut(s) 95, 140, 416, 448, 1265, 1501, 1868
BspCNI CTCAG 4 cut(s) 472, 910, 1927, 1966
BspEI TCCGGA 1 cut(s) 768
BspFNI CGCG 6 cut(s) 92, 180, 195, 200, 385, 1773
BspLI GGNNCC 5 cut(s) 51, 141, 360, 946, 1502
BspPI GGATC 4 cut(s) 19, 33, 698, 869
BsrBI CCGCTC 1 cut(s) 74
BsrDI GCAATG 2 cut(s) 326, 1354
BsrFI RCCGGY 1 cut(s) 1248
BsrGI TGTACA 1 cut(s) 2149
BsrI ACTGG 6 cut(s) 629, 866, 973, 1035, 1731, 1840
BssAI RCCGGY 1 cut(s) 1248
BssECI CCNNGG 9 cut(s) 135, 198, 248, 383, 832, 1193, 2125, 2126, 2188
BssNI GRCGYC 2 cut(s) 87, 347
BssT1I CCWWGG 1 cut(s) 832
Bst2UI CCWGG 3 cut(s) 1794, 2127, 2190
Bst4CI ACNGT 5 cut(s) 601, 985, 1509, 1565, 2083
Bst6I CTCTTC 3 cut(s) 1209, 1686, 1695
BstACI GRCGYC 2 cut(s) 87, 347
BstAUI TGTACA 1 cut(s) 2149
BstBAI YACGTR 1 cut(s) 584
BstC8I GCNNGC 3 cut(s) 184, 240, 334
BstDEI CTNAG 6 cut(s) 480, 918, 1782, 1850, 1935, 1974
BstDSI CCRYGG 2 cut(s) 198, 383
BstEII GGTNACC 1 cut(s) 2024
BstENI CCTNNNNNAGG 1 cut(s) 2193
BstF5I GGATG 3 cut(s) 1186, 1292, 2245
BstFNI CGCG 6 cut(s) 92, 180, 195, 200, 385, 1773
BstH2I RGCGCY 2 cut(s) 333, 1201
BstHHI GCGC 5 cut(s) 182, 197, 332, 1200, 1773
BstMAI GTCTC 4 cut(s) 9, 485, 615, 1410
BstMCI CGRYCG 4 cut(s) 37, 449, 1253, 1777
BstNI CCWGG 3 cut(s) 1794, 2127, 2190
BstNSI RCATGY 4 cut(s) 440, 467, 1087, 1388
BstPAI GACNNNNGTC 1 cut(s) 2208
BstPI GGTNACC 1 cut(s) 2024
BstSCI CCNGG 6 cut(s) 135, 706, 1192, 1792, 2125, 2188
BstSFI CTRYAG 1 cut(s) 1059
BstUI CGCG 6 cut(s) 92, 180, 195, 200, 385, 1773
BstV1I GCAGC 8 cut(s) 174, 226, 238, 241, 289, 298, 328, 1042
BstV2I GAAGAC 4 cut(s) 6, 920, 1434, 1498
BstX2I RGATCY 1 cut(s) 649
BstYI RGATCY 1 cut(s) 649
BstZI CGGCCG 1 cut(s) 446
Bsu36I CCTNAGG 1 cut(s) 1782
BsuRI GGCC 7 cut(s) 95, 140, 416, 448, 1265, 1501, 1868
BtgI CCRYGG 2 cut(s) 198, 383
BtsCI GGATG 3 cut(s) 1186, 1292, 2245
BtsIMutI CAGTG 4 cut(s) 788, 980, 1570, 1738
Cac8I GCNNGC 3 cut(s) 184, 240, 334
CaiI CAGNNNCTG 1 cut(s) 1055
CfoI GCGC 5 cut(s) 182, 197, 332, 1200, 1773
Cfr10I RCCGGY 1 cut(s) 1248
Cfr13I GGNCC 7 cut(s) 139, 358, 399, 1190, 1500, 1866, 2210
Cfr42I CCGCGG 2 cut(s) 201, 386
CseI GACGC 2 cut(s) 400, 1863
Csp6I GTAC 5 cut(s) 220, 963, 1365, 1800, 2150
CspAI ACCGGT 1 cut(s) 1248
CviQI GTAC 5 cut(s) 220, 963, 1365, 1800, 2150
DdeI CTNAG 6 cut(s) 480, 918, 1782, 1850, 1935, 1974
DraIII CACNNNGTG 1 cut(s) 740
DrdI GACNNNNNNGTC 1 cut(s) 397
DriI GACNNNNNGTC 1 cut(s) 304
DseDI GACNNNNNNGTC 1 cut(s) 397
EaeI YGGCCR 2 cut(s) 93, 446
EagI CGGCCG 1 cut(s) 446
Eam1104I CTCTTC 3 cut(s) 1209, 1686, 1695
Eam1105I GACNNNNNGTC 1 cut(s) 304
EarI CTCTTC 3 cut(s) 1209, 1686, 1695
EciI GGCGGA 1 cut(s) 692
Ecl136II GAGCTC 1 cut(s) 1837
EclXI CGGCCG 1 cut(s) 446
Eco130I CCWWGG 1 cut(s) 832
Eco24I GRGCYC 1 cut(s) 1839
Eco32I GATATC 1 cut(s) 766
Eco47I GGWCC 4 cut(s) 358, 399, 1190, 2210
Eco52I CGGCCG 1 cut(s) 446
Eco53kI GAGCTC 1 cut(s) 1837
Eco57I CTGAAG 3 cut(s) 1151, 1671, 1710
Eco72I CACGTG 1 cut(s) 584
Eco81I CCTNAGG 1 cut(s) 1782
Eco88I CYCGRG 2 cut(s) 8, 1298
Eco91I GGTNACC 1 cut(s) 2024
EcoICRI GAGCTC 1 cut(s) 1837
EcoNI CCTNNNNNAGG 1 cut(s) 2193
EcoO109I RGGNCCY 1 cut(s) 1500
EcoO65I GGTNACC 1 cut(s) 2024
EcoRII CCWGG 3 cut(s) 1792, 2125, 2188
EcoRV GATATC 1 cut(s) 766
EcoT14I CCWWGG 1 cut(s) 832
EcoT22I ATGCAT 1 cut(s) 1951
EcoT38I GRGCYC 1 cut(s) 1839
ErhI CCWWGG 1 cut(s) 832
FalI AAGNNNNNCTT 2 cut(s) 816, 848
FaqI GGGAC 1 cut(s) 142
FauI CCCGC 5 cut(s) 79, 167, 185, 317, 369
FbaI TGATCA 2 cut(s) 501, 2053
FokI GGATG 2 cut(s) 1193, 1279
FriOI GRGCYC 1 cut(s) 1839
FspBI CTAG 7 cut(s) 204, 960, 1344, 1641, 1725, 1803, 1872
GlaI GCGC 5 cut(s) 181, 196, 331, 1199, 1772
GsuI CTGGAG 2 cut(s) 1018, 1823
HaeII RGCGCY 2 cut(s) 333, 1201
HaeIII GGCC 7 cut(s) 95, 140, 416, 448, 1265, 1501, 1868
HapII CCGG 7 cut(s) 47, 137, 397, 708, 769, 1193, 1249
HgaI GACGC 2 cut(s) 400, 1863
HhaI GCGC 5 cut(s) 182, 197, 332, 1200, 1773
Hin1I GRCGYC 2 cut(s) 87, 347
Hin6I GCGC 5 cut(s) 180, 195, 330, 1198, 1771
HinP1I GCGC 5 cut(s) 180, 195, 330, 1198, 1771
HindIII AAGCTT 1 cut(s) 1338
HinfI GANTC 8 cut(s) 11, 302, 553, 842, 852, 1718, 1910, 2006
HpaII CCGG 7 cut(s) 47, 137, 397, 708, 769, 1193, 1249
HphI GGTGA 7 cut(s) 851, 934, 1091, 1407, 1595, 1994, 2018
Hpy166II GTNNAC 4 cut(s) 358, 390, 1108, 2150
Hpy188III TCNNGA 9 cut(s) 8, 343, 769, 902, 1010, 1208, 1270, 1688, 2003
Hpy8I GTNNAC 4 cut(s) 358, 390, 1108, 2150
Hpy99I CGWCG 8 cut(s) 86, 89, 92, 302, 310, 313, 352, 376
HpyAV CCTTC 6 cut(s) 253, 265, 541, 965, 1096, 1646
HpyCH4III ACNGT 5 cut(s) 601, 985, 1509, 1565, 2083
HpyCH4IV ACGT 6 cut(s) 87, 347, 583, 1618, 1798, 2161
HpyCH4V TGCA 8 cut(s) 186, 609, 641, 989, 1517, 1553, 1949, 1970
HpyF3I CTNAG 6 cut(s) 480, 918, 1782, 1850, 1935, 1974
HpySE526I ACGT 6 cut(s) 87, 347, 583, 1618, 1798, 2161
Hsp92I GRCGYC 2 cut(s) 87, 347
HspAI GCGC 5 cut(s) 180, 195, 330, 1198, 1771
Kpn2I TCCGGA 1 cut(s) 768
Ksp22I TGATCA 2 cut(s) 501, 2053
KspI CCGCGG 2 cut(s) 201, 386
LmnI GCTCC 4 cut(s) 274, 327, 399, 1842
Lsp1109I GCAGC 8 cut(s) 174, 226, 238, 241, 289, 298, 328, 1042
LweI GCATC 4 cut(s) 1540, 1957, 1958, 2224
MaeI CTAG 7 cut(s) 204, 960, 1344, 1641, 1725, 1803, 1872
MaeII ACGT 6 cut(s) 87, 347, 583, 1618, 1798, 2161
MaeIII GTNAC 8 cut(s) 343, 524, 562, 1079, 1208, 1222, 1982, 2024
MbiI CCGCTC 1 cut(s) 74
MfeI CAATTG 1 cut(s) 377
MflI RGATCY 1 cut(s) 649
MhlI GDGCHC 2 cut(s) 426, 1839
MlyI GAGTC 2 cut(s) 20, 311
MmeI TCCRAC 3 cut(s) 57, 997, 2122
Mph1103I ATGCAT 1 cut(s) 1951
MroI TCCGGA 1 cut(s) 768
MroXI GAANNNNTTC 1 cut(s) 1636
MseI TTAA 3 cut(s) 1610, 1761, 2016
MslI CAYNNNNRTG 3 cut(s) 973, 1383, 1965
MspA1I CMGCKG 4 cut(s) 154, 200, 385, 451
MspI CCGG 7 cut(s) 47, 137, 397, 708, 769, 1193, 1249
MspR9I CCNGG 6 cut(s) 137, 708, 1194, 1794, 2127, 2190
MunI CAATTG 1 cut(s) 377
MvaI CCWGG 3 cut(s) 1794, 2127, 2190
MvnI CGCG 6 cut(s) 92, 180, 195, 200, 385, 1773
NciI CCSGG 3 cut(s) 137, 708, 1194
NlaIV GGNNCC 5 cut(s) 51, 141, 360, 946, 1502
NmeAIII GCCGAG 4 cut(s) 268, 273, 455, 493
NmuCI GTSAC 8 cut(s) 343, 524, 562, 1079, 1208, 1222, 1982, 2024
NsiI ATGCAT 1 cut(s) 1951
NspI RCATGY 4 cut(s) 440, 467, 1087, 1388
PaeR7I CTCGAG 1 cut(s) 8
PasI CCCWGGG 1 cut(s) 2126
PdmI GAANNNNTTC 1 cut(s) 1636
PfeI GAWTC 6 cut(s) 553, 842, 852, 1718, 1910, 2006
PflFI GACNNNGTC 1 cut(s) 86
PflMI CCANNNNNTGG 2 cut(s) 884, 2035
PinAI ACCGGT 1 cut(s) 1248
PleI GAGTC 2 cut(s) 19, 310
PmaCI CACGTG 1 cut(s) 584
PmlI CACGTG 1 cut(s) 584
PpsI GAGTC 2 cut(s) 19, 310
Ppu21I YACGTR 1 cut(s) 584
PshAI GACNNNNGTC 1 cut(s) 2208
Psp124BI GAGCTC 1 cut(s) 1839
Psp6I CCWGG 3 cut(s) 1792, 2125, 2188
PspCI CACGTG 1 cut(s) 584
PspEI GGTNACC 1 cut(s) 2024
PspGI CCWGG 3 cut(s) 1792, 2125, 2188
PspN4I GGNNCC 5 cut(s) 51, 141, 360, 946, 1502
PspPI GGNCC 7 cut(s) 139, 358, 399, 1190, 1500, 1866, 2210
PstNI CAGNNNCTG 1 cut(s) 1055
PsuI RGATCY 1 cut(s) 649
PsyI GACNNNGTC 1 cut(s) 86
RsaI GTAC 5 cut(s) 221, 964, 1366, 1801, 2151
RsaNI GTAC 5 cut(s) 220, 963, 1365, 1800, 2150
RseI CAYNNNNRTG 3 cut(s) 973, 1383, 1965
SacI GAGCTC 1 cut(s) 1839
SacII CCGCGG 2 cut(s) 201, 386
SaqAI TTAA 3 cut(s) 1610, 1761, 2016
Sau96I GGNCC 7 cut(s) 139, 358, 399, 1190, 1500, 1866, 2210
ScaI AGTACT 1 cut(s) 1366
SchI GAGTC 2 cut(s) 20, 311
ScrFI CCNGG 6 cut(s) 137, 708, 1194, 1794, 2127, 2190
SduI GDGCHC 2 cut(s) 426, 1839
SfaNI GCATC 4 cut(s) 1540, 1957, 1958, 2224
SfcI CTRYAG 1 cut(s) 1059
Sfr274I CTCGAG 1 cut(s) 8
Sfr303I CCGCGG 2 cut(s) 201, 386
SgrBI CCGCGG 2 cut(s) 201, 386
SinI GGWCC 4 cut(s) 358, 399, 1190, 2210
SlaI CTCGAG 1 cut(s) 8
SmiMI CAYNNNNRTG 3 cut(s) 973, 1383, 1965
SmlI CTYRAG 2 cut(s) 8, 520
SmoI CTYRAG 2 cut(s) 8, 520
SspMI CTAG 7 cut(s) 204, 960, 1344, 1641, 1725, 1803, 1872
SstI GAGCTC 1 cut(s) 1839
StyD4I CCNGG 6 cut(s) 135, 706, 1192, 1792, 2125, 2188
StyI CCWWGG 1 cut(s) 832
TaaI ACNGT 5 cut(s) 601, 985, 1509, 1565, 2083
TaiI ACGT 6 cut(s) 90, 350, 586, 1621, 1801, 2164
TaqI TCGA 4 cut(s) 9, 1253, 1753, 1957
TaqII GACCGA 1 cut(s) 51
TatI WGTACW 3 cut(s) 962, 1364, 2149
TfiI GAWTC 6 cut(s) 553, 842, 852, 1718, 1910, 2006
Tru1I TTAA 3 cut(s) 1610, 1761, 2016
Tru9I TTAA 3 cut(s) 1610, 1761, 2016
TscAI CASTG 4 cut(s) 795, 980, 1570, 1738
TseFI GTSAC 8 cut(s) 343, 524, 562, 1079, 1208, 1222, 1982, 2024
TseI GCWGC 8 cut(s) 162, 214, 226, 229, 277, 286, 316, 1055
Tsp45I GTSAC 8 cut(s) 343, 524, 562, 1079, 1208, 1222, 1982, 2024
TspGWI ACGGA 2 cut(s) 409, 704
TspRI CASTG 4 cut(s) 795, 980, 1570, 1738
Tth111I GACNNNGTC 1 cut(s) 86
Van91I CCANNNNNTGG 2 cut(s) 884, 2035
VpaK11BI GGWCC 4 cut(s) 358, 399, 1190, 2210
XagI CCTNNNNNAGG 1 cut(s) 2193
XapI RAATTY 3 cut(s) 1004, 1372, 1523
XceI RCATGY 4 cut(s) 440, 467, 1087, 1388
XcmI CCANNNNNNNNNTGG 1 cut(s) 409
XhoI CTCGAG 1 cut(s) 8
XmnI GAANNNNTTC 1 cut(s) 1636
XspI CTAG 7 cut(s) 204, 960, 1344, 1641, 1725, 1803, 1872
ZraI GACGTC 2 cut(s) 88, 348
ZrmI AGTACT 1 cut(s) 1366
Zsp2I ATGCAT 1 cut(s) 1951
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.