Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0006748

Physical Location & Seq

Genomic Coordinates Reverse (-)

6368114 .. 6368470

Gene Structure 357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1091800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGTCGTTGATCAAGTTACCACGGGACCTGAGAGAGGCCAAGTTGTTGGTGAGGTTGGAATGCGGGGTTCTGATGGCGATGTTGATGATGCAGGTGTTGGTGTTGGTGATGAGTCGTGTGTTGCATTGCTGCTGGGTGAGGGAATATGAAGGGTTGGAAGCCAAGAATGAGGCAATGACGAAAAAAAAGAACCGGCGGGTCGCAAAAGTTCAGGAGGAGTCCATGGAAAATGTTGCAAAAATAGACAACATAACACTGCAATTCTGGAATCTCCAAATGCACCAATTGCAAATCACCTCCGTCCGGCAAGGCCTCCAACATGGTCAACGCGACTCTGCAACCACCCAAAAGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

119

Amino Acids

13.77

Weight (kDa)

9.55

Isoelectric Point (pI)

56.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G42725
malus_domestica	MD15G1091800.v1.1 MD15G1217200.v1.1
prunus_persica	Prupe.7G199300_v2.0.a1
pyrus_communis	pycom15g19280
rosa_chinensis	RchiOBHm_Chr1g0362471 RchiOBHm_Chr2g0094891
rosa_laevigata	RLG00000023091 RLG00000033400
rosa_multiflora	Rmu_co8428099.1_g000001 Rmu_sc0004969.1_g000003 Rmu_sc0041750.1_g000001
rosa_roxburghii	Rroxscaffold_2G00107930
rosa_rugosa	Rorug02G0048700.1
rosa_samantha	Rh1AG014600 Rh1DG034300 Rh2AG095200 Rh2AG096300 Rh2BG096200 Rh2CG098200 Rh2DG094800 Rh2DG094900 Rh6CG464700 Rh6DG214600 Rh6DG451300
rosa_wichuraiana	Rw2G007160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	82
Acc36I	ACCTGC	1 cut(s)	82
AccII	CGCG	1 cut(s)	330
AciI	CCGC	2 cut(s)	63, 196
AfiI	CCNNNNNNNGG	2 cut(s)	34, 303
AoxI	GGCC	2 cut(s)	36, 310
ApeKI	GCWGC	1 cut(s)	129
AspS9I	GGNCC	1 cut(s)	25
AsuHPI	GGTGA	4 cut(s)	61, 118, 148, 286
AvaII	GGWCC	1 cut(s)	25
BbvI	GCAGC	1 cut(s)	116
BccI	CCATC	1 cut(s)	67
BclI	TGATCA	1 cut(s)	9
BfuAI	ACCTGC	1 cut(s)	82
BisI	GCNGC	1 cut(s)	130
BlsI	GCNGC	1 cut(s)	131
Bme18I	GGWCC	1 cut(s)	25
BmgT120I	GGNCC	1 cut(s)	25
BmiI	GGNNCC	1 cut(s)	26
BmsI	GCATC	1 cut(s)	78
BsaJI	CCNNGG	2 cut(s)	20, 222
Bsc4I	CCNNNNNNNGG	2 cut(s)	34, 303
Bse118I	RCCGGY	1 cut(s)	192
Bse3DI	GCAATG	2 cut(s)	124, 180
BseDI	CCNNGG	2 cut(s)	20, 222
BseLI	CCNNNNNNNGG	2 cut(s)	34, 303
BseMI	GCAATG	2 cut(s)	124, 180
BseMII	CTCAG	1 cut(s)	20
BseRI	GAGGAG	1 cut(s)	230
BseXI	GCAGC	1 cut(s)	116
BseYI	CCCAGC	1 cut(s)	132
Bsh1236I	CGCG	1 cut(s)	330
BshFI	GGCC	2 cut(s)	38, 312
BsiSI	CCGG	2 cut(s)	193, 304
BslFI	GGGAC	1 cut(s)	38
BslI	CCNNNNNNNGG	2 cut(s)	34, 303
BsmFI	GGGAC	1 cut(s)	38
BsmI	GAATGC	1 cut(s)	65
BsnI	GGCC	2 cut(s)	38, 312
Bsp143I	GATC	1 cut(s)	9
Bsp19I	CCATGG	1 cut(s)	222
BspACI	CCGC	2 cut(s)	63, 196
BspANI	GGCC	2 cut(s)	38, 312
BspCNI	CTCAG	1 cut(s)	21
BspFNI	CGCG	1 cut(s)	330
BspLI	GGNNCC	1 cut(s)	26
BspMI	ACCTGC	1 cut(s)	82
BsrDI	GCAATG	2 cut(s)	124, 180
BsrFI	RCCGGY	1 cut(s)	192
BssAI	RCCGGY	1 cut(s)	192
BssECI	CCNNGG	2 cut(s)	20, 222
BssMI	GATC	1 cut(s)	9
BssT1I	CCWWGG	1 cut(s)	222
BstAPI	GCANNNNNTGC	1 cut(s)	286
BstDEI	CTNAG	1 cut(s)	29
BstDSI	CCRYGG	2 cut(s)	20, 222
BstENI	CCTNNNNNAGG	1 cut(s)	32
BstFNI	CGCG	1 cut(s)	330
BstKTI	GATC	1 cut(s)	12
BstMBI	GATC	1 cut(s)	9
BstMWI	GCNNNNNNNGC	1 cut(s)	286
BstUI	CGCG	1 cut(s)	330
BstV1I	GCAGC	1 cut(s)	116
BstXI	CCANNNNNNTGG	1 cut(s)	46
BsuRI	GGCC	2 cut(s)	38, 312
BtgI	CCRYGG	2 cut(s)	20, 222
BtgZI	GCGATG	1 cut(s)	92
BtsI	GCAGTG	1 cut(s)	254
BtsIMutI	CAGTG	1 cut(s)	254
BveI	ACCTGC	1 cut(s)	82
Cfr10I	RCCGGY	1 cut(s)	192
Cfr13I	GGNCC	1 cut(s)	25
CviAII	CATG	2 cut(s)	223, 320
CviJI	RGCY	3 cut(s)	38, 161, 312
CviKI_1	RGCY	3 cut(s)	38, 161, 312
DdeI	CTNAG	1 cut(s)	29
DpnI	GATC	1 cut(s)	11
DpnII	GATC	1 cut(s)	9
Eco130I	CCWWGG	1 cut(s)	222
Eco147I	AGGCCT	1 cut(s)	312
Eco47I	GGWCC	1 cut(s)	25
EcoNI	CCTNNNNNAGG	1 cut(s)	32
EcoO109I	RGGNCCY	1 cut(s)	25
EcoT14I	CCWWGG	1 cut(s)	222
ErhI	CCWWGG	1 cut(s)	222
FaeI	CATG	2 cut(s)	226, 323
FaiI	YATR	4 cut(s)	147, 224, 251, 321
FaqI	GGGAC	1 cut(s)	38
FatI	CATG	2 cut(s)	222, 319
FauI	CCCGC	2 cut(s)	56, 189
FbaI	TGATCA	1 cut(s)	9
Fnu4HI	GCNGC	1 cut(s)	130
Fsp4HI	GCNGC	1 cut(s)	130
GluI	GCNGC	1 cut(s)	130
GsaI	CCCAGC	1 cut(s)	136
HaeIII	GGCC	2 cut(s)	38, 312
HapII	CCGG	2 cut(s)	193, 304
Hin1II	CATG	2 cut(s)	226, 323
HincII	GTYRAC	1 cut(s)	326
HindII	GTYRAC	1 cut(s)	326
HinfI	GANTC	4 cut(s)	112, 218, 268, 332
HpaII	CCGG	2 cut(s)	193, 304
HphI	GGTGA	4 cut(s)	61, 118, 148, 286
Hpy166II	GTNNAC	1 cut(s)	326
Hpy188I	TCNGA	1 cut(s)	72
Hpy188III	TCNNGA	2 cut(s)	212, 265
Hpy8I	GTNNAC	1 cut(s)	326
HpyAV	CCTTC	1 cut(s)	143
HpyCH4V	TGCA	7 cut(s)	91, 124, 236, 259, 280, 289, 338
HpyF10VI	GCNNNNNNNGC	1 cut(s)	286
HpyF3I	CTNAG	1 cut(s)	29
Hsp92II	CATG	2 cut(s)	226, 323
Ksp22I	TGATCA	1 cut(s)	9
Kzo9I	GATC	1 cut(s)	9
LpnPI	CCDG	7 cut(s)	41, 77, 118, 197, 206, 250, 317
Lsp1109I	GCAGC	1 cut(s)	116
LweI	GCATC	1 cut(s)	78
MaeIII	GTNAC	1 cut(s)	15
MalI	GATC	1 cut(s)	11
MboI	GATC	1 cut(s)	9
MfeI	CAATTG	1 cut(s)	284
MluCI	AATT	2 cut(s)	260, 284
MlyI	GAGTC	3 cut(s)	121, 227, 326
MmeI	TCCRAC	3 cut(s)	36, 135, 340
MnlI	CCTC	7 cut(s)	28, 45, 132, 163, 208, 307, 323
MspI	CCGG	2 cut(s)	193, 304
MunI	CAATTG	1 cut(s)	284
Mva1269I	GAATGC	1 cut(s)	65
MvnI	CGCG	1 cut(s)	330
MwoI	GCNNNNNNNGC	1 cut(s)	286
NcoI	CCATGG	1 cut(s)	222
NdeII	GATC	1 cut(s)	9
NlaIII	CATG	2 cut(s)	226, 323
NlaIV	GGNNCC	1 cut(s)	26
PaqCI	CACCTGC	1 cut(s)	82
PceI	AGGCCT	1 cut(s)	312
PctI	GAATGC	1 cut(s)	65
PfeI	GAWTC	1 cut(s)	268
PkrI	GCNGC	1 cut(s)	131
PleI	GAGTC	3 cut(s)	120, 226, 326
PpsI	GAGTC	3 cut(s)	120, 226, 326
PpuMI	RGGWCCY	1 cut(s)	25
Psp5II	RGGWCCY	1 cut(s)	25
PspFI	CCCAGC	1 cut(s)	132
PspN4I	GGNNCC	1 cut(s)	26
PspPI	GGNCC	1 cut(s)	25
PspPPI	RGGWCCY	1 cut(s)	25
SatI	GCNGC	1 cut(s)	130
Sau3AI	GATC	1 cut(s)	9
Sau96I	GGNCC	1 cut(s)	25
SchI	GAGTC	3 cut(s)	121, 227, 326
SetI	ASST	4 cut(s)	30, 56, 96, 299
SfaNI	GCATC	1 cut(s)	78
SinI	GGWCC	1 cut(s)	25
Sse9I	AATT	2 cut(s)	260, 284
SseBI	AGGCCT	1 cut(s)	312
SsiI	CCGC	2 cut(s)	63, 196
StuI	AGGCCT	1 cut(s)	312
StyI	CCWWGG	1 cut(s)	222
TasI	AATT	2 cut(s)	260, 284
TfiI	GAWTC	1 cut(s)	268
TscAI	CASTG	1 cut(s)	261
TseI	GCWGC	1 cut(s)	129
TspDTI	ATGAA	1 cut(s)	162
TspGWI	ACGGA	1 cut(s)	289
TspRI	CASTG	1 cut(s)	261
VpaK11BI	GGWCC	1 cut(s)	25
XagI	CCTNNNNNAGG	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.