RchiOBHm_Chr2g0094891

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0006748
Physical Location & Seq
Reverse (-)
7786365 .. 7787668
1304 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46988

Sequence Viewer

Length: 624 bp
ATGTCTTCCTCGAAATCCAATCTTAGGAGCTCTTGTTCCTTCCCAAATCTCCTCCTGGCATGCTTGAATTTCATCCTCTTCATTCTCTCTGTCGCATCTCTAGTCCCCACCATCCTCCTCCGAATGCCCCCAACTTCAATGGGTATGGCATTCCTCATGATTTCCGGAATCTCACTGCTCTCTTCATTCGTAAGCTTCTACTCTCACCTCTGCTTCATAACCCACGTCTCACTTCTCCTCGCGTCGTTGATCGGACAAATTCTTGGCATACTGGCCTTGTTTACCAAAGAGCGTGCTACCCTTTTGATGCTCAAGTCCCCCAGGGACCTGAAAGAGGCCAAACTATTGGTGAGGTTGGAATGCGGGGTTTTGATGGCAATGCTGATGATGCAGATGGTGGTGTTGATGTTGAGCTGTGCGGTGCAGAGCTGCTGGGTGAGAGAGTATGAGGGATTGGAAGCCGAGAGAGAGGCCATGACGAAGAAGAGGAGTCAGCGCATTGCCAAGGTTCAAGAGGAGTCCATGGCCAATGCTGAAAAAATTGCAGAGATTAAGGCTAAAGACTTTGATGAGAAGATGAAGAACAAGTATGGACAGAGGGTTAAGCCTGAGTTTGAAGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1

Protein Analysis

207

Amino Acids

23.21

Weight (kDa)

9.18

Isoelectric Point (pI)

54.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 242
AccIII TCCGGA 1 cut(s) 164
AciI CCGC 2 cut(s) 363, 419
AcoI YGGCCR 1 cut(s) 525
AcsI RAATTY 2 cut(s) 67, 258
AfiI CCNNNNNNNGG 2 cut(s) 24, 334
AgsI TTSAA 4 cut(s) 67, 138, 512, 617
AjiI CACGTC 1 cut(s) 226
AjnI CCWGG 2 cut(s) 54, 320
AloI GAACNNNNNNTCC 2 cut(s) 19, 51
AluBI AGCT 4 cut(s) 30, 195, 414, 429
AluI AGCT 4 cut(s) 30, 195, 414, 429
Alw21I GWGCWC 1 cut(s) 32
Alw26I GTCTC 1 cut(s) 232
Aor13HI TCCGGA 1 cut(s) 164
AoxI GGCC 4 cut(s) 273, 336, 471, 525
ApeKI GCWGC 1 cut(s) 429
ApoI RAATTY 2 cut(s) 67, 258
AspLEI GCGC 1 cut(s) 498
AspS9I GGNCC 1 cut(s) 325
AsuHPI GGTGA 3 cut(s) 197, 361, 448
AvaII GGWCC 1 cut(s) 325
BalI TGGCCA 1 cut(s) 527
BanII GRGCYC 1 cut(s) 32
Bbv12I GWGCWC 1 cut(s) 32
BbvI GCAGC 1 cut(s) 416
BccI CCATC 3 cut(s) 119, 367, 388
BciT130I CCWGG 2 cut(s) 56, 322
BcoDI GTCTC 1 cut(s) 232
BfaI CTAG 1 cut(s) 101
BisI GCNGC 1 cut(s) 430
BlsI GCNGC 1 cut(s) 431
Bme1390I CCNGG 2 cut(s) 56, 322
Bme18I GGWCC 1 cut(s) 325
BmgBI CACGTC 1 cut(s) 226
BmgT120I GGNCC 1 cut(s) 325
BmiI GGNNCC 1 cut(s) 326
BmrFI CCNGG 2 cut(s) 56, 322
BmsI GCATC 3 cut(s) 104, 297, 378
BpuEI CTTGAG 1 cut(s) 296
BsaJI CCNNGG 4 cut(s) 320, 321, 504, 522
BsaWI WCCGGW 1 cut(s) 164
BsaXI ACNNNNNCTCC 2 cut(s) 19, 49
Bsc4I CCNNNNNNNGG 2 cut(s) 24, 334
Bse1I ACTGG 1 cut(s) 276
Bse3DI GCAATG 2 cut(s) 384, 498
BseAI TCCGGA 1 cut(s) 164
BseBI CCWGG 2 cut(s) 56, 322
BseDI CCNNGG 4 cut(s) 320, 321, 504, 522
BseGI GGATG 2 cut(s) 72, 111
BseLI CCNNNNNNNGG 2 cut(s) 24, 334
BseMI GCAATG 2 cut(s) 384, 498
BseMII CTCAG 1 cut(s) 600
BseNI ACTGG 1 cut(s) 276
BseRI GAGGAG 5 cut(s) 41, 107, 227, 502, 530
BseXI GCAGC 1 cut(s) 416
BseYI CCCAGC 1 cut(s) 432
BsgI GTGCAG 1 cut(s) 443
Bsh1236I CGCG 1 cut(s) 242
BshFI GGCC 4 cut(s) 275, 338, 473, 527
BsiHKAI GWGCWC 1 cut(s) 32
BsiSI CCGG 1 cut(s) 165
BslFI GGGAC 3 cut(s) 89, 301, 338
BslI CCNNNNNNNGG 2 cut(s) 24, 334
BsmAI GTCTC 1 cut(s) 232
BsmBI CGTCTC 1 cut(s) 232
BsmFI GGGAC 3 cut(s) 89, 301, 338
BsmI GAATGC 3 cut(s) 129, 149, 365
BsnI GGCC 4 cut(s) 275, 338, 473, 527
Bsp1286I GDGCHC 1 cut(s) 32
Bsp13I TCCGGA 1 cut(s) 164
Bsp143I GATC 1 cut(s) 249
Bsp19I CCATGG 1 cut(s) 522
BspACI CCGC 2 cut(s) 363, 419
BspANI GGCC 4 cut(s) 275, 338, 473, 527
BspCNI CTCAG 1 cut(s) 601
BspEI TCCGGA 1 cut(s) 164
BspFNI CGCG 1 cut(s) 242
BspHI TCATGA 1 cut(s) 156
BspLI GGNNCC 1 cut(s) 326
BsrDI GCAATG 2 cut(s) 384, 498
BsrI ACTGG 1 cut(s) 276
BssECI CCNNGG 4 cut(s) 320, 321, 504, 522
BssMI GATC 1 cut(s) 249
BssT1I CCWWGG 2 cut(s) 504, 522
Bst2UI CCWGG 2 cut(s) 56, 322
Bst6I CTCTTC 3 cut(s) 83, 187, 479
BstC8I GCNNGC 2 cut(s) 61, 294
BstDEI CTNAG 2 cut(s) 23, 609
BstDSI CCRYGG 1 cut(s) 522
BstENI CCTNNNNNAGG 1 cut(s) 332
BstF5I GGATG 2 cut(s) 72, 111
BstFNI CGCG 1 cut(s) 242
BstHHI GCGC 1 cut(s) 498
BstKTI GATC 1 cut(s) 252
BstMAI GTCTC 1 cut(s) 232
BstMBI GATC 1 cut(s) 249
BstMWI GCNNNNNNNGC 1 cut(s) 388
BstNI CCWGG 2 cut(s) 56, 322
BstNSI RCATGY 1 cut(s) 63
BstSCI CCNGG 2 cut(s) 54, 320
BstUI CGCG 1 cut(s) 242
BstV1I GCAGC 1 cut(s) 416
BstXI CCANNNNNNTGG 1 cut(s) 346
BsuRI GGCC 4 cut(s) 275, 338, 473, 527
BtgI CCRYGG 1 cut(s) 522
BtrI CACGTC 1 cut(s) 226
BtsCI GGATG 2 cut(s) 72, 111
BtsI GCAGTG 1 cut(s) 173
BtsIMutI CAGTG 1 cut(s) 173
Cac8I GCNNGC 2 cut(s) 61, 294
CciI TCATGA 1 cut(s) 156
CfoI GCGC 1 cut(s) 498
Cfr13I GGNCC 1 cut(s) 325
CseI GACGC 1 cut(s) 231
CviAII CATG 4 cut(s) 60, 157, 475, 523
DdeI CTNAG 2 cut(s) 23, 609
DpnI GATC 1 cut(s) 251
DpnII GATC 1 cut(s) 249
EaeI YGGCCR 1 cut(s) 525
Eam1104I CTCTTC 3 cut(s) 83, 187, 479
EarI CTCTTC 3 cut(s) 83, 187, 479
Ecl136II GAGCTC 1 cut(s) 30
Eco130I CCWWGG 2 cut(s) 504, 522
Eco24I GRGCYC 1 cut(s) 32
Eco47I GGWCC 1 cut(s) 325
Eco53kI GAGCTC 1 cut(s) 30
EcoICRI GAGCTC 1 cut(s) 30
EcoNI CCTNNNNNAGG 1 cut(s) 332
EcoO109I RGGNCCY 1 cut(s) 325
EcoRII CCWGG 2 cut(s) 54, 320
EcoT14I CCWWGG 2 cut(s) 504, 522
EcoT38I GRGCYC 1 cut(s) 32
ErhI CCWWGG 2 cut(s) 504, 522
Esp3I CGTCTC 1 cut(s) 232
FaeI CATG 4 cut(s) 63, 160, 478, 526
FaiI YATR 9 cut(s) 61, 146, 158, 218, 269, 447, 476, 524, 591
FaqI GGGAC 3 cut(s) 89, 301, 338
FatI CATG 4 cut(s) 59, 156, 474, 522
FauI CCCGC 1 cut(s) 356
Fnu4HI GCNGC 1 cut(s) 430
FokI GGATG 2 cut(s) 59, 98
FriOI GRGCYC 1 cut(s) 32
Fsp4HI GCNGC 1 cut(s) 430
FspBI CTAG 1 cut(s) 101
GlaI GCGC 1 cut(s) 497
GluI GCNGC 1 cut(s) 430
GsaI CCCAGC 1 cut(s) 436
HaeIII GGCC 4 cut(s) 275, 338, 473, 527
HapII CCGG 1 cut(s) 165
HgaI GACGC 1 cut(s) 231
HhaI GCGC 1 cut(s) 498
Hin1II CATG 4 cut(s) 63, 160, 478, 526
Hin6I GCGC 1 cut(s) 496
HinP1I GCGC 1 cut(s) 496
HindIII AAGCTT 1 cut(s) 193
HinfI GANTC 3 cut(s) 168, 490, 518
HpaII CCGG 1 cut(s) 165
HphI GGTGA 3 cut(s) 197, 361, 448
Hpy166II GTNNAC 1 cut(s) 282
Hpy188I TCNGA 2 cut(s) 122, 254
Hpy188III TCNNGA 3 cut(s) 157, 165, 512
Hpy8I GTNNAC 1 cut(s) 282
Hpy99I CGWCG 1 cut(s) 247
HpyAV CCTTC 1 cut(s) 49
HpyCH4IV ACGT 1 cut(s) 225
HpyCH4V TGCA 3 cut(s) 391, 424, 545
HpyF10VI GCNNNNNNNGC 1 cut(s) 388
HpyF3I CTNAG 2 cut(s) 23, 609
HpySE526I ACGT 1 cut(s) 225
Hsp92II CATG 4 cut(s) 63, 160, 478, 526
HspAI GCGC 1 cut(s) 496
Kpn2I TCCGGA 1 cut(s) 164
Kzo9I GATC 1 cut(s) 249
LmnI GCTCC 1 cut(s) 27
LpnPI CCDG 8 cut(s) 41, 68, 178, 257, 307, 334, 341, 418
Lsp1109I GCAGC 1 cut(s) 416
LweI GCATC 3 cut(s) 104, 297, 378
MaeI CTAG 1 cut(s) 101
MaeII ACGT 1 cut(s) 225
MalI GATC 1 cut(s) 251
MboI GATC 1 cut(s) 249
MboII GAAGA 6 cut(s) 70, 174, 493, 496, 586, 592
MhlI GDGCHC 1 cut(s) 32
MlsI TGGCCA 1 cut(s) 527
MluCI AATT 3 cut(s) 67, 258, 540
MluNI TGGCCA 1 cut(s) 527
MlyI GAGTC 2 cut(s) 499, 527
MmeI TCCRAC 1 cut(s) 336
Mox20I TGGCCA 1 cut(s) 527
MroI TCCGGA 1 cut(s) 164
MscI TGGCCA 1 cut(s) 527
MseI TTAA 2 cut(s) 552, 603
Msp20I TGGCCA 1 cut(s) 527
MspI CCGG 1 cut(s) 165
MspR9I CCNGG 2 cut(s) 56, 322
Mva1269I GAATGC 3 cut(s) 129, 149, 365
MvaI CCWGG 2 cut(s) 56, 322
MvnI CGCG 1 cut(s) 242
MwoI GCNNNNNNNGC 1 cut(s) 388
NcoI CCATGG 1 cut(s) 522
NdeII GATC 1 cut(s) 249
NlaIII CATG 4 cut(s) 63, 160, 478, 526
NlaIV GGNNCC 1 cut(s) 326
NmeAIII GCCGAG 1 cut(s) 487
NspI RCATGY 1 cut(s) 63
PaeI GCATGC 1 cut(s) 63
PagI TCATGA 1 cut(s) 156
PasI CCCWGGG 1 cut(s) 321
PctI GAATGC 3 cut(s) 129, 149, 365
PfeI GAWTC 1 cut(s) 168
PkrI GCNGC 1 cut(s) 431
PleI GAGTC 2 cut(s) 498, 526
PpsI GAGTC 2 cut(s) 498, 526
PpuMI RGGWCCY 1 cut(s) 325
Psp124BI GAGCTC 1 cut(s) 32
Psp5II RGGWCCY 1 cut(s) 325
Psp6I CCWGG 2 cut(s) 54, 320
PspFI CCCAGC 1 cut(s) 432
PspGI CCWGG 2 cut(s) 54, 320
PspN4I GGNNCC 1 cut(s) 326
PspPI GGNCC 1 cut(s) 325
PspPPI RGGWCCY 1 cut(s) 325
SacI GAGCTC 1 cut(s) 32
SaqAI TTAA 2 cut(s) 552, 603
SatI GCNGC 1 cut(s) 430
Sau3AI GATC 1 cut(s) 249
Sau96I GGNCC 1 cut(s) 325
SchI GAGTC 2 cut(s) 499, 527
ScrFI CCNGG 2 cut(s) 56, 322
SduI GDGCHC 1 cut(s) 32
SetI ASST 9 cut(s) 32, 197, 210, 228, 330, 356, 416, 431, 510
SfaNI GCATC 3 cut(s) 104, 297, 378
SinI GGWCC 1 cut(s) 325
SmlI CTYRAG 1 cut(s) 311
SmoI CTYRAG 1 cut(s) 311
SphI GCATGC 1 cut(s) 63
Sse9I AATT 3 cut(s) 67, 258, 540
SsiI CCGC 2 cut(s) 363, 419
SspMI CTAG 1 cut(s) 101
SstI GAGCTC 1 cut(s) 32
StyD4I CCNGG 2 cut(s) 54, 320
StyI CCWWGG 2 cut(s) 504, 522
TaiI ACGT 1 cut(s) 228
TaqI TCGA 1 cut(s) 11
TasI AATT 3 cut(s) 67, 258, 540
TfiI GAWTC 1 cut(s) 168
Tru1I TTAA 2 cut(s) 552, 603
Tru9I TTAA 2 cut(s) 552, 603
TscAI CASTG 1 cut(s) 180
TseI GCWGC 1 cut(s) 429
TspDTI ATGAA 5 cut(s) 61, 70, 174, 205, 593
TspRI CASTG 1 cut(s) 180
VpaK11BI GGWCC 1 cut(s) 325
XagI CCTNNNNNAGG 1 cut(s) 332
XapI RAATTY 2 cut(s) 67, 258
XceI RCATGY 1 cut(s) 63
XspI CTAG 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.