Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0006748

Physical Location & Seq

Genomic Coordinates Forward (+)

26662421 .. 26662888

Gene Structure 468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033400

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGGCCAAAATGGCAGTCAAGATTCTGGAAATCAAGCAGAGAGCGGCAACGGATCAGGCGGTGAGGGTGGGACAGAGCTCGAGCAATCCGTGAATGAACTTGTTGGGGAAAATAGTGCCAAACTATTGATGAGGTTGGCATGTGGGGTTTTGATGGCAATGCTGATGATGCAGATGGTGGTGTTGATGTTGAGTTGTGCTGTGCAAAGCTGCTGGGTGAGAGAGTATGAAGGATTGGAAGCCGAGAGAGAGGCCACAATGAAGAAGAGGAGTCGGCGGCTTGCTAAGGTTCAAGAGGAGCCCATGGCCAATACTGAAAAAATTGCAGAGATTAAGGCTAATATAAAGAGTTTGATGGGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

122

Amino Acids

13.14

Weight (kDa)

5.28

Isoelectric Point (pI)

52.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G42725
malus_domestica	MD15G1091800.v1.1 MD15G1217200.v1.1
prunus_persica	Prupe.7G199300_v2.0.a1
pyrus_communis	pycom15g19280
rosa_chinensis	RchiOBHm_Chr1g0362471 RchiOBHm_Chr2g0094891
rosa_laevigata	RLG00000023091 RLG00000033400
rosa_multiflora	Rmu_co8428099.1_g000001 Rmu_sc0004969.1_g000003 Rmu_sc0041750.1_g000001
rosa_roxburghii	Rroxscaffold_2G00107930
rosa_rugosa	Rorug02G0048700.1
rosa_samantha	Rh1AG014600 Rh1DG034300 Rh2AG095200 Rh2AG096300 Rh2BG096200 Rh2CG098200 Rh2DG094800 Rh2DG094900 Rh6CG464700 Rh6DG214600 Rh6DG451300
rosa_wichuraiana	Rw2G007160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	45
AciI	CCGC	3 cut(s)	45, 60, 277
AclWI	GGATC	1 cut(s)	61
AcoI	YGGCCR	1 cut(s)	306
AgsI	TTSAA	1 cut(s)	293
AluBI	AGCT	2 cut(s)	79, 210
AluI	AGCT	2 cut(s)	79, 210
Alw21I	GWGCWC	1 cut(s)	81
AlwI	GGATC	1 cut(s)	61
Ama87I	CYCGRG	1 cut(s)	80
AoxI	GGCC	3 cut(s)	4, 252, 306
ApeKI	GCWGC	1 cut(s)	210
ArsI	GACNNNNNNTTYG	1 cut(s)	33
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	2 cut(s)	74, 229
AvaI	CYCGRG	1 cut(s)	80
BalI	TGGCCA	1 cut(s)	308
BanII	GRGCYC	2 cut(s)	81, 303
Bbv12I	GWGCWC	1 cut(s)	81
BbvI	GCAGC	1 cut(s)	197
BccI	CCATC	3 cut(s)	148, 169, 349
BglI	GCCNNNNNGGC	1 cut(s)	12
BisI	GCNGC	3 cut(s)	46, 211, 278
BlsI	GCNGC	3 cut(s)	47, 212, 279
BmeT110I	CYCGRG	1 cut(s)	80
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	300
BmsI	GCATC	1 cut(s)	159
Bpu10I	CCTNAGC	1 cut(s)	285
BsaJI	CCNNGG	1 cut(s)	303
Bse3DI	GCAATG	1 cut(s)	165
BseDI	CCNNGG	1 cut(s)	303
BseMI	GCAATG	1 cut(s)	165
BseRI	GAGGAG	2 cut(s)	283, 311
BseXI	GCAGC	1 cut(s)	197
BseYI	CCCAGC	1 cut(s)	213
BshFI	GGCC	3 cut(s)	6, 254, 308
BsiHKAI	GWGCWC	1 cut(s)	81
BsiHKCI	CYCGRG	1 cut(s)	80
BslFI	GGGAC	1 cut(s)	85
BsmFI	GGGAC	1 cut(s)	85
BsnI	GGCC	3 cut(s)	6, 254, 308
BsoBI	CYCGRG	1 cut(s)	80
Bsp1286I	GDGCHC	2 cut(s)	81, 303
Bsp143I	GATC	1 cut(s)	53
Bsp19I	CCATGG	1 cut(s)	303
BspACI	CCGC	3 cut(s)	45, 60, 277
BspANI	GGCC	3 cut(s)	6, 254, 308
BspLI	GGNNCC	1 cut(s)	300
BspPI	GGATC	1 cut(s)	61
BsrBI	CCGCTC	1 cut(s)	45
BsrDI	GCAATG	1 cut(s)	165
BssECI	CCNNGG	1 cut(s)	303
BssMI	GATC	1 cut(s)	53
BssT1I	CCWWGG	1 cut(s)	303
Bst6I	CTCTTC	1 cut(s)	260
BstC8I	GCNNGC	1 cut(s)	282
BstDEI	CTNAG	1 cut(s)	285
BstDSI	CCRYGG	1 cut(s)	303
BstKTI	GATC	1 cut(s)	56
BstMBI	GATC	1 cut(s)	53
BstMWI	GCNNNNNNNGC	2 cut(s)	12, 169
BstNSI	RCATGY	1 cut(s)	144
BstV1I	GCAGC	1 cut(s)	197
BsuRI	GGCC	3 cut(s)	6, 254, 308
BtgI	CCRYGG	1 cut(s)	303
Cac8I	GCNNGC	1 cut(s)	282
Cfr13I	GGNCC	1 cut(s)	4
CviAII	CATG	2 cut(s)	141, 304
CviJI	RGCY	9 cut(s)	6, 79, 210, 242, 254, 280, 301, 308, 338
CviKI_1	RGCY	9 cut(s)	6, 79, 210, 242, 254, 280, 301, 308, 338
DdeI	CTNAG	1 cut(s)	285
DpnI	GATC	1 cut(s)	55
DpnII	GATC	1 cut(s)	53
EaeI	YGGCCR	1 cut(s)	306
Eam1104I	CTCTTC	1 cut(s)	260
EarI	CTCTTC	1 cut(s)	260
Ecl136II	GAGCTC	1 cut(s)	79
Eco130I	CCWWGG	1 cut(s)	303
Eco24I	GRGCYC	2 cut(s)	81, 303
Eco53kI	GAGCTC	1 cut(s)	79
Eco88I	CYCGRG	1 cut(s)	80
EcoICRI	GAGCTC	1 cut(s)	79
EcoT14I	CCWWGG	1 cut(s)	303
EcoT38I	GRGCYC	2 cut(s)	81, 303
ErhI	CCWWGG	1 cut(s)	303
FaeI	CATG	2 cut(s)	144, 307
FaiI	YATR	4 cut(s)	142, 228, 305, 344
FaqI	GGGAC	1 cut(s)	85
FatI	CATG	2 cut(s)	140, 303
Fnu4HI	GCNGC	3 cut(s)	46, 211, 278
FriOI	GRGCYC	2 cut(s)	81, 303
Fsp4HI	GCNGC	3 cut(s)	46, 211, 278
GluI	GCNGC	3 cut(s)	46, 211, 278
GsaI	CCCAGC	1 cut(s)	217
HaeIII	GGCC	3 cut(s)	6, 254, 308
Hin1II	CATG	2 cut(s)	144, 307
HinfI	GANTC	2 cut(s)	23, 271
HphI	GGTGA	2 cut(s)	74, 229
Hpy188III	TCNNGA	3 cut(s)	20, 27, 293
HpyAV	CCTTC	1 cut(s)	224
HpyCH4V	TGCA	3 cut(s)	172, 205, 326
HpyF10VI	GCNNNNNNNGC	2 cut(s)	12, 169
HpyF3I	CTNAG	1 cut(s)	285
Hsp92II	CATG	2 cut(s)	144, 307
Kzo9I	GATC	1 cut(s)	53
LmnI	GCTCC	1 cut(s)	298
LpnPI	CCDG	3 cut(s)	12, 42, 199
Lsp1109I	GCAGC	1 cut(s)	197
LweI	GCATC	1 cut(s)	159
MalI	GATC	1 cut(s)	55
MbiI	CCGCTC	1 cut(s)	45
MboI	GATC	1 cut(s)	53
MboII	GAAGA	2 cut(s)	274, 277
MhlI	GDGCHC	2 cut(s)	81, 303
MlsI	TGGCCA	1 cut(s)	308
MluCI	AATT	1 cut(s)	321
MluNI	TGGCCA	1 cut(s)	308
MlyI	GAGTC	1 cut(s)	280
MnlI	CCTC	5 cut(s)	58, 126, 244, 261, 289
Mox20I	TGGCCA	1 cut(s)	308
MscI	TGGCCA	1 cut(s)	308
MseI	TTAA	1 cut(s)	333
Msp20I	TGGCCA	1 cut(s)	308
MwoI	GCNNNNNNNGC	2 cut(s)	12, 169
NcoI	CCATGG	1 cut(s)	303
NdeII	GATC	1 cut(s)	53
NlaIII	CATG	2 cut(s)	144, 307
NlaIV	GGNNCC	1 cut(s)	300
NmeAIII	GCCGAG	1 cut(s)	268
NspI	RCATGY	1 cut(s)	144
PaeR7I	CTCGAG	1 cut(s)	80
PcsI	WCGNNNNNNNCGW	1 cut(s)	87
PfeI	GAWTC	1 cut(s)	23
PkrI	GCNGC	3 cut(s)	47, 212, 279
PleI	GAGTC	1 cut(s)	279
PpsI	GAGTC	1 cut(s)	279
Psp124BI	GAGCTC	1 cut(s)	81
PspFI	CCCAGC	1 cut(s)	213
PspN4I	GGNNCC	1 cut(s)	300
PspPI	GGNCC	1 cut(s)	4
PspXI	VCTCGAGB	1 cut(s)	80
SacI	GAGCTC	1 cut(s)	81
SaqAI	TTAA	1 cut(s)	333
SatI	GCNGC	3 cut(s)	46, 211, 278
Sau3AI	GATC	1 cut(s)	53
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	1 cut(s)	280
SduI	GDGCHC	2 cut(s)	81, 303
SetI	ASST	4 cut(s)	81, 137, 212, 291
SfaNI	GCATC	1 cut(s)	159
Sfr274I	CTCGAG	1 cut(s)	80
SlaI	CTCGAG	1 cut(s)	80
SmlI	CTYRAG	1 cut(s)	80
SmoI	CTYRAG	1 cut(s)	80
Sse9I	AATT	1 cut(s)	321
SsiI	CCGC	3 cut(s)	45, 60, 277
SstI	GAGCTC	1 cut(s)	81
StyI	CCWWGG	1 cut(s)	303
TaqI	TCGA	1 cut(s)	81
TasI	AATT	1 cut(s)	321
TauI	GCSGC	2 cut(s)	48, 280
TfiI	GAWTC	1 cut(s)	23
Tru1I	TTAA	1 cut(s)	333
Tru9I	TTAA	1 cut(s)	333
TseI	GCWGC	1 cut(s)	210
TspDTI	ATGAA	3 cut(s)	111, 243, 275
TspGWI	ACGGA	2 cut(s)	66, 79
XceI	RCATGY	1 cut(s)	144
XhoI	CTCGAG	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.