Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0006748

Physical Location & Seq

Genomic Coordinates Reverse (-)

13723376 .. 13724011

Gene Structure 636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g19280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGCAGCCTCGAAATCGAACCTTCGAAGCTCTTGTTCCTTCCCAAATCTTCTCCTCTCATGTCTGAACTTCACTCTCTTCATCCTCTCCGTCACCTCTCTGGTTCCCACCGTCCTCCTCCGAACGCCCCCAACTTCAATGGGCATGGCATTCCTAATGATTTCCGGCATCTCGATTCTCTCCTCCTTTGTAGGGTTCTACTCTCAGCTCACCCACCTCTGCTTCATAACCCACGTTTCTCTCCTACTCGCCTCGCTGGTCGCGCAGCTGCTCGGCACATTGGCATTGTTCACCAAAGAGCGCAGCACCATGTCGTTGATCAAGTCACCACGGGACCCGAGAGAGGCCAAGCTGTTGGTGAGGTTGGAATGCGGGGTTCTGATGGCGATGCTGATGATGCAGGTGTTGGTGTTGGTGATGAGCTGCGTGGTGCAGAGCTGCTGGGTGAGGGAGTATGAAGGGTTGGAAGCCGAGAGGGAGGCGATGACGAAGAAGAGGAGCCGGCGGATCGCGAAAGTTCAGGAGGAGTCCATGGAAAATGCTGCAAAAGTAGCTGAGGTGAAGGCCAAGGAGCTGGATGAGAAGATGAAGAACAAGTATGGGCAATGGGTGAAGACGTCTGAGTTCGAAGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

212

Amino Acids

23.56

Weight (kDa)

9.2

Isoelectric Point (pI)

51.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G42725
malus_domestica	MD15G1091800.v1.1 MD15G1217200.v1.1
prunus_persica	Prupe.7G199300_v2.0.a1
pyrus_communis	pycom15g19280
rosa_chinensis	RchiOBHm_Chr1g0362471 RchiOBHm_Chr2g0094891
rosa_laevigata	RLG00000023091 RLG00000033400
rosa_multiflora	Rmu_co8428099.1_g000001 Rmu_sc0004969.1_g000003 Rmu_sc0041750.1_g000001
rosa_roxburghii	Rroxscaffold_2G00107930
rosa_rugosa	Rorug02G0048700.1
rosa_samantha	Rh1AG014600 Rh1DG034300 Rh2AG095200 Rh2AG096300 Rh2BG096200 Rh2CG098200 Rh2DG094800 Rh2DG094900 Rh6CG464700 Rh6DG214600 Rh6DG451300
rosa_wichuraiana	Rw2G007160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	391
AatII	GACGTC	1 cut(s)	620
Acc36I	ACCTGC	1 cut(s)	391
AccII	CGCG	2 cut(s)	263, 512
AciI	CCGC	2 cut(s)	372, 505
AclWI	GGATC	1 cut(s)	515
AcyI	GRCGYC	1 cut(s)	617
AfiI	CCNNNNNNNGG	2 cut(s)	192, 343
AgsI	TTSAA	1 cut(s)	138
AluBI	AGCT	8 cut(s)	30, 208, 268, 352, 423, 438, 554, 574
AluI	AGCT	8 cut(s)	30, 208, 268, 352, 423, 438, 554, 574
AlwI	GGATC	1 cut(s)	515
Ama87I	CYCGRG	1 cut(s)	337
AoxI	GGCC	2 cut(s)	345, 564
ApeKI	GCWGC	7 cut(s)	5, 265, 268, 303, 423, 438, 542
AspLEI	GCGC	2 cut(s)	265, 303
AspS9I	GGNCC	1 cut(s)	334
AsuHPI	GGTGA	9 cut(s)	85, 202, 283, 318, 370, 427, 457, 571, 622
AsuII	TTCGAA	2 cut(s)	25, 627
AvaI	CYCGRG	1 cut(s)	337
AvaII	GGWCC	1 cut(s)	334
BbsI	GAAGAC	1 cut(s)	620
BbvCI	CCTCAGC	1 cut(s)	555
BbvI	GCAGC	7 cut(s)	17, 255, 277, 315, 410, 425, 529
BccI	CCATC	1 cut(s)	376
BclI	TGATCA	1 cut(s)	318
BfuAI	ACCTGC	1 cut(s)	391
BisI	GCNGC	7 cut(s)	6, 266, 269, 304, 424, 439, 543
BlsI	GCNGC	7 cut(s)	7, 267, 270, 305, 425, 440, 544
Bme18I	GGWCC	1 cut(s)	334
BmeT110I	CYCGRG	1 cut(s)	337
BmgT120I	GGNCC	1 cut(s)	334
BmiI	GGNNCC	4 cut(s)	105, 335, 336, 500
BmsI	GCATC	3 cut(s)	177, 378, 387
BpiI	GAAGAC	1 cut(s)	620
Bpu10I	CCTNAGC	1 cut(s)	555
Bpu14I	TTCGAA	2 cut(s)	25, 627
BsaHI	GRCGYC	1 cut(s)	617
BsaJI	CCNNGG	3 cut(s)	329, 531, 567
Bsc4I	CCNNNNNNNGG	2 cut(s)	192, 343
Bse118I	RCCGGY	1 cut(s)	501
Bse3DI	GCAATG	1 cut(s)	611
BseDI	CCNNGG	3 cut(s)	329, 531, 567
BseGI	GGATG	2 cut(s)	81, 583
BseLI	CCNNNNNNNGG	2 cut(s)	192, 343
BseMI	GCAATG	1 cut(s)	611
BseMII	CTCAG	3 cut(s)	218, 546, 612
BseRI	GAGGAG	5 cut(s)	44, 107, 172, 511, 539
BseXI	GCAGC	7 cut(s)	17, 255, 277, 315, 410, 425, 529
BseYI	CCCAGC	1 cut(s)	441
BsgI	GTGCAG	1 cut(s)	452
Bsh1236I	CGCG	2 cut(s)	263, 512
BshFI	GGCC	2 cut(s)	347, 566
BsiHKCI	CYCGRG	1 cut(s)	337
BsiSI	CCGG	2 cut(s)	165, 502
BslFI	GGGAC	1 cut(s)	347
BslI	CCNNNNNNNGG	2 cut(s)	192, 343
BsmFI	GGGAC	1 cut(s)	347
BsmI	GAATGC	2 cut(s)	149, 374
BsnI	GGCC	2 cut(s)	347, 566
BsoBI	CYCGRG	1 cut(s)	337
Bsp119I	TTCGAA	2 cut(s)	25, 627
Bsp143I	GATC	2 cut(s)	318, 507
Bsp19I	CCATGG	1 cut(s)	531
Bsp68I	TCGCGA	1 cut(s)	512
BspACI	CCGC	2 cut(s)	372, 505
BspANI	GGCC	2 cut(s)	347, 566
BspCNI	CTCAG	3 cut(s)	217, 547, 613
BspFNI	CGCG	2 cut(s)	263, 512
BspLI	GGNNCC	4 cut(s)	105, 335, 336, 500
BspMI	ACCTGC	1 cut(s)	391
BspPI	GGATC	1 cut(s)	515
BspT104I	TTCGAA	2 cut(s)	25, 627
BsrDI	GCAATG	1 cut(s)	611
BsrFI	RCCGGY	1 cut(s)	501
BssAI	RCCGGY	1 cut(s)	501
BssECI	CCNNGG	3 cut(s)	329, 531, 567
BssMI	GATC	2 cut(s)	318, 507
BssNI	GRCGYC	1 cut(s)	617
BssT1I	CCWWGG	2 cut(s)	531, 567
Bst4CI	ACNGT	1 cut(s)	112
Bst6I	CTCTTC	2 cut(s)	83, 488
BstACI	GRCGYC	1 cut(s)	617
BstBI	TTCGAA	2 cut(s)	25, 627
BstC8I	GCNNGC	1 cut(s)	503
BstDEI	CTNAG	3 cut(s)	204, 555, 621
BstDSI	CCRYGG	2 cut(s)	329, 531
BstF5I	GGATG	2 cut(s)	81, 583
BstFNI	CGCG	2 cut(s)	263, 512
BstHHI	GCGC	2 cut(s)	265, 303
BstKTI	GATC	2 cut(s)	321, 510
BstMBI	GATC	2 cut(s)	318, 507
BstMWI	GCNNNNNNNGC	3 cut(s)	262, 397, 551
BstUI	CGCG	2 cut(s)	263, 512
BstV1I	GCAGC	7 cut(s)	17, 255, 277, 315, 410, 425, 529
BstV2I	GAAGAC	1 cut(s)	620
BstXI	CCANNNNNNTGG	2 cut(s)	355, 574
BsuRI	GGCC	2 cut(s)	347, 566
BtgI	CCRYGG	2 cut(s)	329, 531
BtgZI	GCGATG	2 cut(s)	401, 497
BtsCI	GGATG	2 cut(s)	81, 583
BtuMI	TCGCGA	1 cut(s)	512
BveI	ACCTGC	1 cut(s)	391
Cac8I	GCNNGC	1 cut(s)	503
CfoI	GCGC	2 cut(s)	265, 303
Cfr10I	RCCGGY	1 cut(s)	501
Cfr13I	GGNCC	1 cut(s)	334
CviAII	CATG	4 cut(s)	60, 145, 310, 532
DdeI	CTNAG	3 cut(s)	204, 555, 621
DpnI	GATC	2 cut(s)	320, 509
DpnII	GATC	2 cut(s)	318, 507
Eam1104I	CTCTTC	2 cut(s)	83, 488
EarI	CTCTTC	2 cut(s)	83, 488
EciI	GGCGGA	1 cut(s)	520
Eco130I	CCWWGG	2 cut(s)	531, 567
Eco47I	GGWCC	1 cut(s)	334
Eco88I	CYCGRG	1 cut(s)	337
EcoO109I	RGGNCCY	1 cut(s)	334
EcoT14I	CCWWGG	2 cut(s)	531, 567
ErhI	CCWWGG	2 cut(s)	531, 567
FaeI	CATG	4 cut(s)	63, 148, 313, 535
FaiI	YATR	7 cut(s)	61, 146, 227, 311, 456, 533, 600
FaqI	GGGAC	1 cut(s)	347
FatI	CATG	4 cut(s)	59, 144, 309, 531
FauI	CCCGC	1 cut(s)	365
FbaI	TGATCA	1 cut(s)	318
Fnu4HI	GCNGC	7 cut(s)	6, 266, 269, 304, 424, 439, 543
FokI	GGATG	2 cut(s)	68, 590
Fsp4HI	GCNGC	7 cut(s)	6, 266, 269, 304, 424, 439, 543
GlaI	GCGC	2 cut(s)	264, 302
GluI	GCNGC	7 cut(s)	6, 266, 269, 304, 424, 439, 543
GsaI	CCCAGC	1 cut(s)	445
HaeIII	GGCC	2 cut(s)	347, 566
HapII	CCGG	2 cut(s)	165, 502
HhaI	GCGC	2 cut(s)	265, 303
Hin1I	GRCGYC	1 cut(s)	617
Hin1II	CATG	4 cut(s)	63, 148, 313, 535
Hin6I	GCGC	2 cut(s)	263, 301
HinP1I	GCGC	2 cut(s)	263, 301
HinfI	GANTC	2 cut(s)	175, 527
HpaII	CCGG	2 cut(s)	165, 502
HphI	GGTGA	9 cut(s)	85, 202, 283, 318, 370, 427, 457, 571, 622
Hpy166II	GTNNAC	1 cut(s)	291
Hpy188I	TCNGA	4 cut(s)	66, 122, 381, 622
Hpy188III	TCNNGA	3 cut(s)	172, 511, 521
Hpy8I	GTNNAC	1 cut(s)	291
HpyAV	CCTTC	5 cut(s)	32, 49, 452, 556, 623
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4IV	ACGT	2 cut(s)	234, 617
HpyCH4V	TGCA	3 cut(s)	400, 433, 545
HpyF10VI	GCNNNNNNNGC	3 cut(s)	262, 397, 551
HpyF3I	CTNAG	3 cut(s)	204, 555, 621
HpySE526I	ACGT	2 cut(s)	234, 617
Hsp92I	GRCGYC	1 cut(s)	617
Hsp92II	CATG	4 cut(s)	63, 148, 313, 535
HspAI	GCGC	2 cut(s)	263, 301
KflI	GGGWCCC	1 cut(s)	334
KroI	GCCGGC	1 cut(s)	501
KroNI	GCCGGC	1 cut(s)	503
Ksp22I	TGATCA	1 cut(s)	318
Kzo9I	GATC	2 cut(s)	318, 507
LmnI	GCTCC	2 cut(s)	498, 571
LpnPI	CCDG	8 cut(s)	86, 178, 242, 386, 427, 506, 515, 560
Lsp1109I	GCAGC	7 cut(s)	17, 255, 277, 315, 410, 425, 529
LweI	GCATC	3 cut(s)	177, 378, 387
MaeII	ACGT	2 cut(s)	234, 617
MaeIII	GTNAC	2 cut(s)	91, 324
MalI	GATC	2 cut(s)	320, 509
MboI	GATC	2 cut(s)	318, 507
MboII	GAAGA	7 cut(s)	41, 70, 502, 505, 595, 601, 625
MlyI	GAGTC	1 cut(s)	536
MmeI	TCCRAC	2 cut(s)	345, 444
MroNI	GCCGGC	1 cut(s)	501
MspA1I	CMGCKG	1 cut(s)	268
MspI	CCGG	2 cut(s)	165, 502
Mva1269I	GAATGC	2 cut(s)	149, 374
MvnI	CGCG	2 cut(s)	263, 512
MwoI	GCNNNNNNNGC	3 cut(s)	262, 397, 551
NaeI	GCCGGC	1 cut(s)	503
NcoI	CCATGG	1 cut(s)	531
NdeII	GATC	2 cut(s)	318, 507
NgoMIV	GCCGGC	1 cut(s)	501
NlaIII	CATG	4 cut(s)	63, 148, 313, 535
NlaIV	GGNNCC	4 cut(s)	105, 335, 336, 500
NmeAIII	GCCGAG	2 cut(s)	252, 496
NmuCI	GTSAC	2 cut(s)	91, 324
NruI	TCGCGA	1 cut(s)	512
NspV	TTCGAA	2 cut(s)	25, 627
PaqCI	CACCTGC	1 cut(s)	391
PctI	GAATGC	2 cut(s)	149, 374
PdiI	GCCGGC	1 cut(s)	503
PfeI	GAWTC	1 cut(s)	175
PkrI	GCNGC	7 cut(s)	7, 267, 270, 305, 425, 440, 544
PleI	GAGTC	1 cut(s)	535
PpsI	GAGTC	1 cut(s)	535
PpuMI	RGGWCCY	1 cut(s)	334
Psp5II	RGGWCCY	1 cut(s)	334
PspFI	CCCAGC	1 cut(s)	441
PspN4I	GGNNCC	4 cut(s)	105, 335, 336, 500
PspPI	GGNCC	1 cut(s)	334
PspPPI	RGGWCCY	1 cut(s)	334
PvuII	CAGCTG	1 cut(s)	268
RruI	TCGCGA	1 cut(s)	512
SatI	GCNGC	7 cut(s)	6, 266, 269, 304, 424, 439, 543
Sau3AI	GATC	2 cut(s)	318, 507
Sau96I	GGNCC	1 cut(s)	334
SchI	GAGTC	1 cut(s)	536
SfaNI	GCATC	3 cut(s)	177, 378, 387
SfuI	TTCGAA	2 cut(s)	25, 627
SinI	GGWCC	1 cut(s)	334
SsiI	CCGC	2 cut(s)	372, 505
StyI	CCWWGG	2 cut(s)	531, 567
TaaI	ACNGT	1 cut(s)	112
TaiI	ACGT	2 cut(s)	237, 620
TaqI	TCGA	5 cut(s)	11, 17, 25, 173, 627
TfiI	GAWTC	1 cut(s)	175
TseFI	GTSAC	2 cut(s)	91, 324
TseI	GCWGC	7 cut(s)	5, 265, 268, 303, 423, 438, 542
Tsp45I	GTSAC	2 cut(s)	91, 324
TspDTI	ATGAA	4 cut(s)	70, 214, 471, 602
TspGWI	ACGGA	1 cut(s)	79
VpaK11BI	GGWCC	1 cut(s)	334
ZraI	GACGTC	1 cut(s)	618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.