RLG00000023091

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0006748
Physical Location & Seq
Reverse (-)
17965188 .. 17967528
2341 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023091

Sequence Viewer

Length: 534 bp
ATGGGTGTCCTGCACGATTTACACCCGAGTATTCTTCAAAAGTTGTTTGCGGCGGTTGTGGCGGCCGTCTCTGCCAACACTATTGTTGTGGGTGTGTGGGACACCACTCACCTCATTGGTGTTGGTGTTGATATTGAGGGAGAAAATGGATATGAAATCCAAGAGCTCTGGATGAGTGACAGCAGCGGCGGAAGCAGGAATCAGCAAGGCTACTATTTGGATATTGATAAGAGGGAATTAGATCGGAGGAAGAAGAAGAACATGAGGACGGGGAAAACCCGGGCCACGGTGGTCGCCACCTCACAACTCCTGCAGCCCAAAACCCAACTGATTTCTATCCCATTTTTCTCTGCTCATGAAGGATTGGAAGCCGAGAGAGAGGCCACGATGAAGAAGAGGAGTCGGCGGCTTGCTAAGGTTCAAGAGGAGCCCATGGAGAATGCTGAAAAAATTGTAGAGATTAAGGCTAAAGAGTTTGATGAGAAGATGAAGATCAAGTATGGACAGAGGGTGAAGCCTGAGTTTGAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1

Protein Analysis

178

Amino Acids

20.03

Weight (kDa)

8.71

Isoelectric Point (pI)

42.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 50, 53, 62, 186, 189, 406
AcoI YGGCCR 1 cut(s) 63
AfiI CCNNNNNNNGG 1 cut(s) 286
AgsI TTSAA 3 cut(s) 38, 422, 527
AluBI AGCT 2 cut(s) 166, 530
AluI AGCT 2 cut(s) 166, 530
Alw21I GWGCWC 1 cut(s) 168
Alw26I GTCTC 1 cut(s) 73
Ama87I CYCGRG 2 cut(s) 25, 279
AoxI GGCC 3 cut(s) 63, 282, 381
ApeKI GCWGC 2 cut(s) 183, 313
AspS9I GGNCC 1 cut(s) 282
AsuC2I CCSGG 2 cut(s) 280, 281
AsuHPI GGTGA 2 cut(s) 101, 523
AvaI CYCGRG 2 cut(s) 25, 279
BanII GRGCYC 2 cut(s) 168, 432
Bbv12I GWGCWC 1 cut(s) 168
BbvI GCAGC 2 cut(s) 195, 325
BceAI ACGGC 1 cut(s) 50
BcnI CCSGG 2 cut(s) 280, 281
BcoDI GTCTC 1 cut(s) 73
BfmI CTRYAG 1 cut(s) 311
BisI GCNGC 6 cut(s) 51, 63, 184, 187, 314, 407
BlsI GCNGC 6 cut(s) 52, 64, 185, 188, 315, 408
Bme1390I CCNGG 2 cut(s) 280, 281
BmeT110I CYCGRG 2 cut(s) 25, 279
BmgT120I GGNCC 1 cut(s) 282
BmiI GGNNCC 1 cut(s) 429
BmrFI CCNGG 2 cut(s) 280, 281
Bpu10I CCTNAGC 1 cut(s) 414
BpuMI CCSGG 2 cut(s) 280, 281
BsaBI GATNNNNATC 2 cut(s) 335, 491
BsaJI CCNNGG 3 cut(s) 279, 285, 432
Bsc4I CCNNNNNNNGG 1 cut(s) 286
Bse8I GATNNNNATC 2 cut(s) 335, 491
BseDI CCNNGG 3 cut(s) 279, 285, 432
BseGI GGATG 1 cut(s) 177
BseJI GATNNNNATC 2 cut(s) 335, 491
BseLI CCNNNNNNNGG 1 cut(s) 286
BseMII CTCAG 1 cut(s) 510
BseRI GAGGAG 2 cut(s) 412, 440
BseX3I CGGCCG 1 cut(s) 63
BseXI GCAGC 2 cut(s) 195, 325
Bsh1285I CGRYCG 1 cut(s) 66
BshFI GGCC 3 cut(s) 65, 284, 383
BsiEI CGRYCG 1 cut(s) 66
BsiHKAI GWGCWC 1 cut(s) 168
BsiHKCI CYCGRG 2 cut(s) 25, 279
BsiSI CCGG 1 cut(s) 280
BslFI GGGAC 1 cut(s) 113
BslI CCNNNNNNNGG 1 cut(s) 286
BsmAI GTCTC 1 cut(s) 73
BsmBI CGTCTC 1 cut(s) 73
BsmFI GGGAC 1 cut(s) 113
BsmI GAATGC 1 cut(s) 445
BsnI GGCC 3 cut(s) 65, 284, 383
BsoBI CYCGRG 2 cut(s) 25, 279
Bsp1286I GDGCHC 2 cut(s) 168, 432
Bsp143I GATC 2 cut(s) 241, 492
Bsp19I CCATGG 1 cut(s) 432
BspACI CCGC 6 cut(s) 50, 53, 62, 186, 189, 406
BspANI GGCC 3 cut(s) 65, 284, 383
BspCNI CTCAG 1 cut(s) 511
BspHI TCATGA 1 cut(s) 355
BspLI GGNNCC 1 cut(s) 429
BspMAI CTGCAG 1 cut(s) 315
BssECI CCNNGG 3 cut(s) 279, 285, 432
BssMI GATC 2 cut(s) 241, 492
BssT1I CCWWGG 1 cut(s) 432
Bst4CI ACNGT 1 cut(s) 289
Bst6I CTCTTC 1 cut(s) 389
BstC8I GCNNGC 1 cut(s) 411
BstDEI CTNAG 2 cut(s) 414, 519
BstDSI CCRYGG 2 cut(s) 285, 432
BstF5I GGATG 1 cut(s) 177
BstKTI GATC 2 cut(s) 244, 495
BstMAI GTCTC 1 cut(s) 73
BstMBI GATC 2 cut(s) 241, 492
BstMCI CGRYCG 1 cut(s) 66
BstMWI GCNNNNNNNGC 3 cut(s) 59, 71, 192
BstSCI CCNGG 2 cut(s) 278, 279
BstSFI CTRYAG 1 cut(s) 311
BstV1I GCAGC 2 cut(s) 195, 325
BstZI CGGCCG 1 cut(s) 63
BsuRI GGCC 3 cut(s) 65, 284, 383
BtgI CCRYGG 2 cut(s) 285, 432
BtsCI GGATG 1 cut(s) 177
Cac8I GCNNGC 1 cut(s) 411
CciI TCATGA 1 cut(s) 355
Cfr13I GGNCC 1 cut(s) 282
Cfr9I CCCGGG 1 cut(s) 279
CviAII CATG 3 cut(s) 262, 356, 433
DdeI CTNAG 2 cut(s) 414, 519
DpnI GATC 2 cut(s) 243, 494
DpnII GATC 2 cut(s) 241, 492
EaeI YGGCCR 1 cut(s) 63
EagI CGGCCG 1 cut(s) 63
Eam1104I CTCTTC 1 cut(s) 389
EarI CTCTTC 1 cut(s) 389
EciI GGCGGA 1 cut(s) 204
Ecl136II GAGCTC 1 cut(s) 166
EclXI CGGCCG 1 cut(s) 63
Eco130I CCWWGG 1 cut(s) 432
Eco24I GRGCYC 2 cut(s) 168, 432
Eco52I CGGCCG 1 cut(s) 63
Eco53kI GAGCTC 1 cut(s) 166
Eco88I CYCGRG 2 cut(s) 25, 279
EcoICRI GAGCTC 1 cut(s) 166
EcoT14I CCWWGG 1 cut(s) 432
EcoT38I GRGCYC 2 cut(s) 168, 432
ErhI CCWWGG 1 cut(s) 432
Esp3I CGTCTC 1 cut(s) 73
FaeI CATG 3 cut(s) 265, 359, 436
FaiI YATR 5 cut(s) 153, 263, 357, 434, 501
FaqI GGGAC 1 cut(s) 113
FatI CATG 3 cut(s) 261, 355, 432
Fnu4HI GCNGC 6 cut(s) 51, 63, 184, 187, 314, 407
FokI GGATG 1 cut(s) 184
FriOI GRGCYC 2 cut(s) 168, 432
Fsp4HI GCNGC 6 cut(s) 51, 63, 184, 187, 314, 407
GluI GCNGC 6 cut(s) 51, 63, 184, 187, 314, 407
HaeIII GGCC 3 cut(s) 65, 284, 383
HapII CCGG 1 cut(s) 280
Hin1II CATG 3 cut(s) 265, 359, 436
HindIII AAGCTT 1 cut(s) 528
HinfI GANTC 2 cut(s) 199, 400
HpaII CCGG 1 cut(s) 280
HphI GGTGA 2 cut(s) 101, 523
Hpy188I TCNGA 1 cut(s) 246
Hpy188III TCNNGA 3 cut(s) 169, 356, 422
HpyAV CCTTC 1 cut(s) 353
HpyCH4III ACNGT 1 cut(s) 289
HpyCH4V TGCA 2 cut(s) 13, 313
HpyF10VI GCNNNNNNNGC 3 cut(s) 59, 71, 192
HpyF3I CTNAG 2 cut(s) 414, 519
Hsp92II CATG 3 cut(s) 265, 359, 436
Kzo9I GATC 2 cut(s) 241, 492
LmnI GCTCC 1 cut(s) 427
LpnPI CCDG 5 cut(s) 23, 154, 181, 293, 323
Lsp1109I GCAGC 2 cut(s) 195, 325
MaeIII GTNAC 1 cut(s) 176
MalI GATC 2 cut(s) 243, 494
MboI GATC 2 cut(s) 241, 492
MboII GAAGA 8 cut(s) 26, 262, 265, 268, 403, 406, 496, 502
MhlI GDGCHC 2 cut(s) 168, 432
MluCI AATT 2 cut(s) 236, 450
MlyI GAGTC 1 cut(s) 409
MseI TTAA 1 cut(s) 462
MspA1I CMGCKG 1 cut(s) 186
MspI CCGG 1 cut(s) 280
MspR9I CCNGG 2 cut(s) 280, 281
Mva1269I GAATGC 1 cut(s) 445
MwoI GCNNNNNNNGC 3 cut(s) 59, 71, 192
NciI CCSGG 2 cut(s) 280, 281
NcoI CCATGG 1 cut(s) 432
NdeII GATC 2 cut(s) 241, 492
NlaIII CATG 3 cut(s) 265, 359, 436
NlaIV GGNNCC 1 cut(s) 429
NmeAIII GCCGAG 1 cut(s) 397
NmuCI GTSAC 1 cut(s) 176
PagI TCATGA 1 cut(s) 355
PctI GAATGC 1 cut(s) 445
PfeI GAWTC 1 cut(s) 199
PkrI GCNGC 6 cut(s) 52, 64, 185, 188, 315, 408
PleI GAGTC 1 cut(s) 408
PpsI GAGTC 1 cut(s) 408
Psp124BI GAGCTC 1 cut(s) 168
PspN4I GGNNCC 1 cut(s) 429
PspPI GGNCC 1 cut(s) 282
PstI CTGCAG 1 cut(s) 315
SacI GAGCTC 1 cut(s) 168
SaqAI TTAA 1 cut(s) 462
SatI GCNGC 6 cut(s) 51, 63, 184, 187, 314, 407
Sau3AI GATC 2 cut(s) 241, 492
Sau96I GGNCC 1 cut(s) 282
SchI GAGTC 1 cut(s) 409
ScrFI CCNGG 2 cut(s) 280, 281
SduI GDGCHC 2 cut(s) 168, 432
SetI ASST 5 cut(s) 114, 168, 302, 420, 532
SfcI CTRYAG 1 cut(s) 311
SmaI CCCGGG 1 cut(s) 281
Sse9I AATT 2 cut(s) 236, 450
SsiI CCGC 6 cut(s) 50, 53, 62, 186, 189, 406
SstI GAGCTC 1 cut(s) 168
StyD4I CCNGG 2 cut(s) 278, 279
StyI CCWWGG 1 cut(s) 432
TaaI ACNGT 1 cut(s) 289
TasI AATT 2 cut(s) 236, 450
TauI GCSGC 4 cut(s) 53, 65, 189, 409
TfiI GAWTC 1 cut(s) 199
Tru1I TTAA 1 cut(s) 462
Tru9I TTAA 1 cut(s) 462
TseFI GTSAC 1 cut(s) 176
TseI GCWGC 2 cut(s) 183, 313
Tsp45I GTSAC 1 cut(s) 176
TspDTI ATGAA 4 cut(s) 168, 372, 404, 503
TspMI CCCGGG 1 cut(s) 279
XmaI CCCGGG 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.