Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0006748

Physical Location & Seq

Genomic Coordinates Reverse (-)

6932135 .. 6932759

Gene Structure 625 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G007160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGTCTTCCTCGAAATCCAATCTTAGGAGCTCTTGTTCCTTCCCAAATCTCCTCCTGGCATGCTTGAATTTCATCCTCTTCATTCTCTCTGTCGCATCTCTAGTCCCCACTATCCTCCTCCGAATGCCCCCAACTTCGATGGGTATGGCATTCCTCATGATTTCCGGAATCTCACTGCTCTCTTCATTCGTAAGCTTCTACTCTCACCTCTGCTTCATAACCCACCGTGCTACCCTTTCGATGCTCAAGTCCCCCAGGGACCTGAAAGAGGCCAAACTATTGGTGAGGTTGGAATGCGGGGTTTTGATGGCAATGCTGATGATGCAGATGGTGGTGTTGATGTTGAGCTGTGCGGTGCAGAGCTGCTGGGTGAGAGAGTATGAGGGATTGGAAGCCGAGAGAGAGGCCATGACGAAGAAGAGGAGTCAGCGCATTGCCAAGGTTCAAGAGGAGTCCATGGCCAATGCTGAAAAAATTGCAGAGATTAAGGCTAAAGACTTTGATGAGAAGATGAAGAACAAGTATGGACAGAGGGTTAAGCCTGAGTTTGAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

185

Amino Acids

20.89

Weight (kDa)

9.2

Isoelectric Point (pI)

57.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G42725
malus_domestica	MD15G1091800.v1.1 MD15G1217200.v1.1
prunus_persica	Prupe.7G199300_v2.0.a1
pyrus_communis	pycom15g19280
rosa_chinensis	RchiOBHm_Chr1g0362471 RchiOBHm_Chr2g0094891
rosa_laevigata	RLG00000023091 RLG00000033400
rosa_multiflora	Rmu_co8428099.1_g000001 Rmu_sc0004969.1_g000003 Rmu_sc0041750.1_g000001
rosa_roxburghii	Rroxscaffold_2G00107930
rosa_rugosa	Rorug02G0048700.1
rosa_samantha	Rh1AG014600 Rh1DG034300 Rh2AG095200 Rh2AG096300 Rh2BG096200 Rh2CG098200 Rh2DG094800 Rh2DG094900 Rh6CG464700 Rh6DG214600 Rh6DG451300
rosa_wichuraiana	Rw2G007160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	164
AciI	CCGC	2 cut(s)	297, 353
AcoI	YGGCCR	1 cut(s)	459
AcsI	RAATTY	1 cut(s)	67
AfiI	CCNNNNNNNGG	2 cut(s)	24, 268
AgsI	TTSAA	3 cut(s)	67, 446, 551
AjnI	CCWGG	2 cut(s)	54, 254
AloI	GAACNNNNNNTCC	2 cut(s)	19, 51
AluBI	AGCT	5 cut(s)	30, 195, 348, 363, 554
AluI	AGCT	5 cut(s)	30, 195, 348, 363, 554
Alw21I	GWGCWC	1 cut(s)	32
Aor13HI	TCCGGA	1 cut(s)	164
AoxI	GGCC	3 cut(s)	270, 405, 459
ApeKI	GCWGC	1 cut(s)	363
ApoI	RAATTY	1 cut(s)	67
AspLEI	GCGC	1 cut(s)	432
AspS9I	GGNCC	1 cut(s)	259
AsuHPI	GGTGA	3 cut(s)	197, 295, 382
AvaII	GGWCC	1 cut(s)	259
BalI	TGGCCA	1 cut(s)	461
BanII	GRGCYC	1 cut(s)	32
Bbv12I	GWGCWC	1 cut(s)	32
BbvI	GCAGC	1 cut(s)	350
BccI	CCATC	3 cut(s)	133, 301, 322
BciT130I	CCWGG	2 cut(s)	56, 256
BfaI	CTAG	1 cut(s)	101
BisI	GCNGC	1 cut(s)	364
BlsI	GCNGC	1 cut(s)	365
Bme1390I	CCNGG	2 cut(s)	56, 256
Bme18I	GGWCC	1 cut(s)	259
BmgT120I	GGNCC	1 cut(s)	259
BmiI	GGNNCC	1 cut(s)	260
BmrFI	CCNGG	2 cut(s)	56, 256
BmsI	GCATC	3 cut(s)	104, 231, 312
BpuEI	CTTGAG	1 cut(s)	230
BsaJI	CCNNGG	4 cut(s)	254, 255, 438, 456
BsaWI	WCCGGW	1 cut(s)	164
BsaXI	ACNNNNNCTCC	2 cut(s)	19, 49
Bsc4I	CCNNNNNNNGG	2 cut(s)	24, 268
Bse3DI	GCAATG	2 cut(s)	318, 432
BseAI	TCCGGA	1 cut(s)	164
BseBI	CCWGG	2 cut(s)	56, 256
BseDI	CCNNGG	4 cut(s)	254, 255, 438, 456
BseGI	GGATG	1 cut(s)	72
BseLI	CCNNNNNNNGG	2 cut(s)	24, 268
BseMI	GCAATG	2 cut(s)	318, 432
BseMII	CTCAG	1 cut(s)	534
BseRI	GAGGAG	4 cut(s)	41, 107, 436, 464
BseXI	GCAGC	1 cut(s)	350
BseYI	CCCAGC	1 cut(s)	366
BsgI	GTGCAG	1 cut(s)	377
BshFI	GGCC	3 cut(s)	272, 407, 461
BsiHKAI	GWGCWC	1 cut(s)	32
BsiSI	CCGG	1 cut(s)	165
BslFI	GGGAC	3 cut(s)	89, 235, 272
BslI	CCNNNNNNNGG	2 cut(s)	24, 268
BsmFI	GGGAC	3 cut(s)	89, 235, 272
BsmI	GAATGC	3 cut(s)	129, 149, 299
BsnI	GGCC	3 cut(s)	272, 407, 461
Bsp1286I	GDGCHC	1 cut(s)	32
Bsp13I	TCCGGA	1 cut(s)	164
Bsp19I	CCATGG	1 cut(s)	456
BspACI	CCGC	2 cut(s)	297, 353
BspANI	GGCC	3 cut(s)	272, 407, 461
BspCNI	CTCAG	1 cut(s)	535
BspEI	TCCGGA	1 cut(s)	164
BspHI	TCATGA	1 cut(s)	156
BspLI	GGNNCC	1 cut(s)	260
BsrDI	GCAATG	2 cut(s)	318, 432
BssECI	CCNNGG	4 cut(s)	254, 255, 438, 456
BssT1I	CCWWGG	2 cut(s)	438, 456
Bst2UI	CCWGG	2 cut(s)	56, 256
Bst4CI	ACNGT	1 cut(s)	227
Bst6I	CTCTTC	3 cut(s)	83, 187, 413
BstC8I	GCNNGC	1 cut(s)	61
BstDEI	CTNAG	2 cut(s)	23, 543
BstDSI	CCRYGG	1 cut(s)	456
BstENI	CCTNNNNNAGG	1 cut(s)	266
BstF5I	GGATG	1 cut(s)	72
BstHHI	GCGC	1 cut(s)	432
BstMWI	GCNNNNNNNGC	1 cut(s)	322
BstNI	CCWGG	2 cut(s)	56, 256
BstNSI	RCATGY	1 cut(s)	63
BstSCI	CCNGG	2 cut(s)	54, 254
BstV1I	GCAGC	1 cut(s)	350
BstXI	CCANNNNNNTGG	1 cut(s)	280
BsuRI	GGCC	3 cut(s)	272, 407, 461
BtgI	CCRYGG	1 cut(s)	456
BtsCI	GGATG	1 cut(s)	72
BtsI	GCAGTG	1 cut(s)	173
BtsIMutI	CAGTG	1 cut(s)	173
Cac8I	GCNNGC	1 cut(s)	61
CciI	TCATGA	1 cut(s)	156
CfoI	GCGC	1 cut(s)	432
Cfr13I	GGNCC	1 cut(s)	259
CviAII	CATG	4 cut(s)	60, 157, 409, 457
DdeI	CTNAG	2 cut(s)	23, 543
EaeI	YGGCCR	1 cut(s)	459
Eam1104I	CTCTTC	3 cut(s)	83, 187, 413
EarI	CTCTTC	3 cut(s)	83, 187, 413
Ecl136II	GAGCTC	1 cut(s)	30
Eco130I	CCWWGG	2 cut(s)	438, 456
Eco24I	GRGCYC	1 cut(s)	32
Eco47I	GGWCC	1 cut(s)	259
Eco53kI	GAGCTC	1 cut(s)	30
EcoICRI	GAGCTC	1 cut(s)	30
EcoNI	CCTNNNNNAGG	1 cut(s)	266
EcoO109I	RGGNCCY	1 cut(s)	259
EcoRII	CCWGG	2 cut(s)	54, 254
EcoT14I	CCWWGG	2 cut(s)	438, 456
EcoT38I	GRGCYC	1 cut(s)	32
ErhI	CCWWGG	2 cut(s)	438, 456
FaeI	CATG	4 cut(s)	63, 160, 412, 460
FaiI	YATR	8 cut(s)	61, 146, 158, 218, 381, 410, 458, 525
FaqI	GGGAC	3 cut(s)	89, 235, 272
FatI	CATG	4 cut(s)	59, 156, 408, 456
FauI	CCCGC	1 cut(s)	290
Fnu4HI	GCNGC	1 cut(s)	364
FokI	GGATG	1 cut(s)	59
FriOI	GRGCYC	1 cut(s)	32
Fsp4HI	GCNGC	1 cut(s)	364
FspBI	CTAG	1 cut(s)	101
GlaI	GCGC	1 cut(s)	431
GluI	GCNGC	1 cut(s)	364
GsaI	CCCAGC	1 cut(s)	370
HaeIII	GGCC	3 cut(s)	272, 407, 461
HapII	CCGG	1 cut(s)	165
HhaI	GCGC	1 cut(s)	432
Hin1II	CATG	4 cut(s)	63, 160, 412, 460
Hin6I	GCGC	1 cut(s)	430
HinP1I	GCGC	1 cut(s)	430
HindIII	AAGCTT	2 cut(s)	193, 552
HinfI	GANTC	3 cut(s)	168, 424, 452
HpaII	CCGG	1 cut(s)	165
HphI	GGTGA	3 cut(s)	197, 295, 382
Hpy188I	TCNGA	1 cut(s)	122
Hpy188III	TCNNGA	3 cut(s)	157, 165, 446
HpyAV	CCTTC	1 cut(s)	49
HpyCH4III	ACNGT	1 cut(s)	227
HpyCH4V	TGCA	3 cut(s)	325, 358, 479
HpyF10VI	GCNNNNNNNGC	1 cut(s)	322
HpyF3I	CTNAG	2 cut(s)	23, 543
Hsp92II	CATG	4 cut(s)	63, 160, 412, 460
HspAI	GCGC	1 cut(s)	430
Kpn2I	TCCGGA	1 cut(s)	164
LmnI	GCTCC	1 cut(s)	27
LpnPI	CCDG	7 cut(s)	41, 68, 178, 241, 268, 275, 352
Lsp1109I	GCAGC	1 cut(s)	350
LweI	GCATC	3 cut(s)	104, 231, 312
MaeI	CTAG	1 cut(s)	101
MboII	GAAGA	6 cut(s)	70, 174, 427, 430, 520, 526
MhlI	GDGCHC	1 cut(s)	32
MlsI	TGGCCA	1 cut(s)	461
MluCI	AATT	2 cut(s)	67, 474
MluNI	TGGCCA	1 cut(s)	461
MlyI	GAGTC	2 cut(s)	433, 461
MmeI	TCCRAC	1 cut(s)	270
Mox20I	TGGCCA	1 cut(s)	461
MroI	TCCGGA	1 cut(s)	164
MscI	TGGCCA	1 cut(s)	461
MseI	TTAA	2 cut(s)	486, 537
Msp20I	TGGCCA	1 cut(s)	461
MspI	CCGG	1 cut(s)	165
MspR9I	CCNGG	2 cut(s)	56, 256
Mva1269I	GAATGC	3 cut(s)	129, 149, 299
MvaI	CCWGG	2 cut(s)	56, 256
MwoI	GCNNNNNNNGC	1 cut(s)	322
NcoI	CCATGG	1 cut(s)	456
NlaIII	CATG	4 cut(s)	63, 160, 412, 460
NlaIV	GGNNCC	1 cut(s)	260
NmeAIII	GCCGAG	1 cut(s)	421
NspI	RCATGY	1 cut(s)	63
PaeI	GCATGC	1 cut(s)	63
PagI	TCATGA	1 cut(s)	156
PasI	CCCWGGG	1 cut(s)	255
PctI	GAATGC	3 cut(s)	129, 149, 299
PfeI	GAWTC	1 cut(s)	168
PkrI	GCNGC	1 cut(s)	365
PleI	GAGTC	2 cut(s)	432, 460
PpsI	GAGTC	2 cut(s)	432, 460
PpuMI	RGGWCCY	1 cut(s)	259
Psp124BI	GAGCTC	1 cut(s)	32
Psp5II	RGGWCCY	1 cut(s)	259
Psp6I	CCWGG	2 cut(s)	54, 254
PspFI	CCCAGC	1 cut(s)	366
PspGI	CCWGG	2 cut(s)	54, 254
PspN4I	GGNNCC	1 cut(s)	260
PspPI	GGNCC	1 cut(s)	259
PspPPI	RGGWCCY	1 cut(s)	259
SacI	GAGCTC	1 cut(s)	32
SaqAI	TTAA	2 cut(s)	486, 537
SatI	GCNGC	1 cut(s)	364
Sau96I	GGNCC	1 cut(s)	259
SchI	GAGTC	2 cut(s)	433, 461
ScrFI	CCNGG	2 cut(s)	56, 256
SduI	GDGCHC	1 cut(s)	32
SetI	ASST	9 cut(s)	32, 197, 210, 264, 290, 350, 365, 444, 556
SfaNI	GCATC	3 cut(s)	104, 231, 312
SinI	GGWCC	1 cut(s)	259
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
SphI	GCATGC	1 cut(s)	63
Sse9I	AATT	2 cut(s)	67, 474
SsiI	CCGC	2 cut(s)	297, 353
SspMI	CTAG	1 cut(s)	101
SstI	GAGCTC	1 cut(s)	32
StyD4I	CCNGG	2 cut(s)	54, 254
StyI	CCWWGG	2 cut(s)	438, 456
TaaI	ACNGT	1 cut(s)	227
TaqI	TCGA	3 cut(s)	11, 137, 239
TasI	AATT	2 cut(s)	67, 474
TfiI	GAWTC	1 cut(s)	168
Tru1I	TTAA	2 cut(s)	486, 537
Tru9I	TTAA	2 cut(s)	486, 537
TscAI	CASTG	1 cut(s)	180
TseI	GCWGC	1 cut(s)	363
TspDTI	ATGAA	5 cut(s)	61, 70, 174, 205, 527
TspRI	CASTG	1 cut(s)	180
VpaK11BI	GGWCC	1 cut(s)	259
XagI	CCTNNNNNAGG	1 cut(s)	266
XapI	RAATTY	1 cut(s)	67
XceI	RCATGY	1 cut(s)	63
XspI	CTAG	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.