Rmu_sc0004969.1_g000003

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004969.1
OG0006748
Physical Location & Seq
Reverse (-)
15118 .. 19618
4501 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004969.1_g000003.1.cds

Sequence Viewer

Length: 1104 bp
atggtgaaccggtggaatatttgttgtgagttgtatggagcttccggtggccggttcggtaggtttccggtcgattcttggggtggggtcaccagttctgaactcctgggatcgagttcttcaaggtgtaaggtggaggtagaaaaggcttcaagggttgggaaaacggcaacctttagcgatttcaatccctgtacctgctctattttcatggagttactcacgggttccagccaattccttattattctcgtcgctcttcagagcagcgatggtggtgtatttggcgacggcagtcatctacaaattcaaggtgatttatcgatggaggtctcattccgggtttgcaagtccttgttgtcggtcttgtggtcggagatgggtaacctgatgttggtgtcagatcttcatcttcgaactcaccggagttgctttgatggtggtcgggttcgttatcaagcctgcggtgggagctgtgccttaagatcaggttctggatccaacgaggcagaaggatccggatctgggattcgagtcgtgcgggtagtgttggtattgctcttccactacgacgttgtcttggccgtaattctcctcgtccagatcttcgtcgatagcgtcgtcgtcatcttcaggctcgtatcgattggtaggtgcccgagaatacggaatttcaaatttgaagggaatgagattctgaaacgagttgaagctgaaggaatccctaattttggttatttagaaaaagtgacccccttttgggattttgattggaatgcaaccaaactattggtgaggttggaatgcggggttttgattgcaatgctgatgatgcagatggtggtgttgatgttgagttatgctatgcagagctgttgggtgagagagtatgaaggattggaagccgagagagaggccacgacgaagaagaggagtcggctgcttgctaaggttcaagaggagtccttggccaatactgaaaaaattgcagagattaaggctaatgagtttgatgagaagatgaagaacaagtctggacagagggtgaagcctgagtctctgagctgtttgtatgggtcactatggttgtgggcattgggttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1

Protein Analysis

367

Amino Acids

40.78

Weight (kDa)

7.91

Isoelectric Point (pI)

46.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 206
AccB1I GGYRCC 1 cut(s) 654
AccIII TCCGGA 1 cut(s) 518
AciI CCGC 3 cut(s) 465, 541, 807
AclWI GGATC 6 cut(s) 118, 492, 505, 510, 523, 529
AcoI YGGCCR 3 cut(s) 49, 582, 969
AcsI RAATTY 3 cut(s) 306, 670, 677
AcuI CTGAAG 3 cut(s) 245, 616, 735
AfaI GTAC 1 cut(s) 196
AfiI CCNNNNNNNGG 7 cut(s) 51, 394, 468, 525, 731, 759, 760
AflII CTTAAG 1 cut(s) 481
AgeI ACCGGT 1 cut(s) 9
AgsI TTSAA 8 cut(s) 123, 153, 187, 311, 676, 683, 710, 956
AjnI CCWGG 1 cut(s) 105
AluBI AGCT 5 cut(s) 41, 474, 713, 873, 1065
AluI AGCT 5 cut(s) 41, 474, 713, 873, 1065
Alw26I GTCTC 2 cut(s) 337, 1062
AlwI GGATC 6 cut(s) 118, 492, 505, 510, 523, 529
AlwNI CAGNNNCTG 1 cut(s) 494
Ama87I CYCGRG 1 cut(s) 658
Aor13HI TCCGGA 1 cut(s) 518
AoxI GGCC 4 cut(s) 49, 582, 915, 969
ApeKI GCWGC 2 cut(s) 267, 940
ApoI RAATTY 3 cut(s) 306, 670, 677
AsiGI ACCGGT 1 cut(s) 9
AsuC2I CCSGG 1 cut(s) 341
AsuHPI GGTGA 7 cut(s) 16, 82, 326, 413, 805, 892, 1057
AsuII TTCGAA 1 cut(s) 415
AvaI CYCGRG 1 cut(s) 658
BaeGI GKGCMC 1 cut(s) 659
BalI TGGCCA 1 cut(s) 971
BamHI GGATCC 2 cut(s) 497, 515
BanI GGYRCC 1 cut(s) 654
BbvI GCAGC 2 cut(s) 279, 927
BccI CCATC 5 cut(s) 266, 319, 373, 431, 832
BceAI ACGGC 3 cut(s) 183, 307, 569
BciT130I CCWGG 1 cut(s) 107
BcnI CCSGG 1 cut(s) 341
BcoDI GTCTC 2 cut(s) 337, 1062
BfrI CTTAAG 1 cut(s) 481
BfuAI ACCTGC 1 cut(s) 206
BglII AGATCT 2 cut(s) 403, 603
BisI GCNGC 2 cut(s) 268, 941
BlsI GCNGC 2 cut(s) 269, 942
Bme1390I CCNGG 2 cut(s) 107, 341
BmeT110I CYCGRG 1 cut(s) 658
BmiI GGNNCC 4 cut(s) 229, 499, 517, 656
BmrFI CCNGG 2 cut(s) 107, 341
BmsI GCATC 1 cut(s) 822
BoxI GACNNNNGTC 1 cut(s) 294
Bpu10I CCTNAGC 1 cut(s) 948
Bpu14I TTCGAA 1 cut(s) 415
BpuMI CCSGG 1 cut(s) 341
Bsa29I ATCGAT 2 cut(s) 323, 644
BsaBI GATNNNNATC 3 cut(s) 186, 408, 520
BsaI GGTCTC 1 cut(s) 337
BsaJI CCNNGG 2 cut(s) 106, 966
BsaWI WCCGGW 5 cut(s) 9, 44, 67, 423, 518
Bsc4I CCNNNNNNNGG 7 cut(s) 51, 394, 468, 525, 731, 759, 760
Bse118I RCCGGY 2 cut(s) 9, 51
Bse1I ACTGG 1 cut(s) 93
Bse3DI GCAATG 1 cut(s) 828
Bse8I GATNNNNATC 3 cut(s) 186, 408, 520
BseAI TCCGGA 1 cut(s) 518
BseBI CCWGG 1 cut(s) 107
BseCI ATCGAT 2 cut(s) 323, 644
BseDI CCNNGG 2 cut(s) 106, 966
BseJI GATNNNNATC 3 cut(s) 186, 408, 520
BseLI CCNNNNNNNGG 7 cut(s) 51, 394, 468, 525, 731, 759, 760
BseMI GCAATG 1 cut(s) 828
BseMII CTCAG 2 cut(s) 1044, 1052
BseNI ACTGG 1 cut(s) 93
BseRI GAGGAG 3 cut(s) 584, 946, 974
BseSI GKGCMC 1 cut(s) 659
BseXI GCAGC 2 cut(s) 279, 927
Bsh1285I CGRYCG 1 cut(s) 72
BshFI GGCC 4 cut(s) 51, 584, 917, 971
BshNI GGYRCC 1 cut(s) 654
BshTI ACCGGT 1 cut(s) 9
BshVI ATCGAT 2 cut(s) 323, 644
BsiEI CGRYCG 1 cut(s) 72
BsiHKCI CYCGRG 1 cut(s) 658
BsiSI CCGG 7 cut(s) 10, 45, 52, 68, 340, 424, 519
BslI CCNNNNNNNGG 7 cut(s) 51, 394, 468, 525, 731, 759, 760
BsmAI GTCTC 2 cut(s) 337, 1062
BsmI GAATGC 2 cut(s) 781, 809
BsnI GGCC 4 cut(s) 51, 584, 917, 971
Bso31I GGTCTC 1 cut(s) 337
BsoBI CYCGRG 1 cut(s) 658
Bsp119I TTCGAA 1 cut(s) 415
Bsp1286I GDGCHC 1 cut(s) 659
Bsp13I TCCGGA 1 cut(s) 518
Bsp143I GATC 7 cut(s) 110, 403, 485, 497, 515, 521, 603
BspACI CCGC 3 cut(s) 465, 541, 807
BspANI GGCC 4 cut(s) 51, 584, 917, 971
BspCNI CTCAG 2 cut(s) 1045, 1053
BspDI ATCGAT 2 cut(s) 323, 644
BspEI TCCGGA 1 cut(s) 518
BspLI GGNNCC 4 cut(s) 229, 499, 517, 656
BspMI ACCTGC 1 cut(s) 206
BspPI GGATC 6 cut(s) 118, 492, 505, 510, 523, 529
BspQI GCTCTTC 2 cut(s) 264, 566
BspT104I TTCGAA 1 cut(s) 415
BspT107I GGYRCC 1 cut(s) 654
BspTI CTTAAG 1 cut(s) 481
BspTNI GGTCTC 1 cut(s) 337
BsrDI GCAATG 1 cut(s) 828
BsrFI RCCGGY 2 cut(s) 9, 51
BsrI ACTGG 1 cut(s) 93
BssAI RCCGGY 2 cut(s) 9, 51
BssECI CCNNGG 2 cut(s) 106, 966
BssMI GATC 7 cut(s) 110, 403, 485, 497, 515, 521, 603
BssT1I CCWWGG 1 cut(s) 966
Bst2UI CCWGG 1 cut(s) 107
Bst6I CTCTTC 3 cut(s) 264, 566, 923
BstAFI CTTAAG 1 cut(s) 481
BstBI TTCGAA 1 cut(s) 415
BstC8I GCNNGC 2 cut(s) 463, 945
BstDEI CTNAG 3 cut(s) 948, 1053, 1061
BstEII GGTNACC 2 cut(s) 88, 383
BstKTI GATC 7 cut(s) 113, 406, 488, 500, 518, 524, 606
BstMAI GTCTC 2 cut(s) 337, 1062
BstMBI GATC 7 cut(s) 110, 403, 485, 497, 515, 521, 603
BstMCI CGRYCG 1 cut(s) 72
BstMWI GCNNNNNNNGC 2 cut(s) 471, 832
BstNI CCWGG 1 cut(s) 107
BstPAI GACNNNNGTC 1 cut(s) 294
BstPI GGTNACC 2 cut(s) 88, 383
BstSCI CCNGG 2 cut(s) 105, 339
BstSLI GKGCMC 1 cut(s) 659
BstV1I GCAGC 2 cut(s) 279, 927
BstX2I RGATCY 5 cut(s) 403, 497, 515, 521, 603
BstXI CCANNNNNNTGG 1 cut(s) 790
BstYI RGATCY 5 cut(s) 403, 497, 515, 521, 603
Bsu15I ATCGAT 2 cut(s) 323, 644
BsuRI GGCC 4 cut(s) 51, 584, 917, 971
BsuTUI ATCGAT 2 cut(s) 323, 644
BtgZI GCGATG 1 cut(s) 285
BveI ACCTGC 1 cut(s) 206
Cac8I GCNNGC 2 cut(s) 463, 945
CaiI CAGNNNCTG 1 cut(s) 494
Cfr10I RCCGGY 2 cut(s) 9, 51
ClaI ATCGAT 2 cut(s) 323, 644
CseI GACGC 1 cut(s) 607
Csp6I GTAC 1 cut(s) 195
CspAI ACCGGT 1 cut(s) 9
CviAII CATG 1 cut(s) 211
CviQI GTAC 1 cut(s) 195
DdeI CTNAG 3 cut(s) 948, 1053, 1061
DpnI GATC 7 cut(s) 112, 405, 487, 499, 517, 523, 605
DpnII GATC 7 cut(s) 110, 403, 485, 497, 515, 521, 603
EaeI YGGCCR 3 cut(s) 49, 582, 969
Eam1104I CTCTTC 3 cut(s) 264, 566, 923
EarI CTCTTC 3 cut(s) 264, 566, 923
Eco130I CCWWGG 1 cut(s) 966
Eco31I GGTCTC 1 cut(s) 337
Eco57I CTGAAG 3 cut(s) 245, 616, 735
Eco88I CYCGRG 1 cut(s) 658
Eco91I GGTNACC 2 cut(s) 88, 383
EcoO65I GGTNACC 2 cut(s) 88, 383
EcoRII CCWGG 1 cut(s) 105
EcoT14I CCWWGG 1 cut(s) 966
ErhI CCWWGG 1 cut(s) 966
FaeI CATG 1 cut(s) 214
FaiI YATR 7 cut(s) 36, 212, 861, 866, 891, 1074, 1084
FatI CATG 1 cut(s) 210
FauI CCCGC 2 cut(s) 534, 800
Fnu4HI GCNGC 2 cut(s) 268, 941
Fsp4HI GCNGC 2 cut(s) 268, 941
GluI GCNGC 2 cut(s) 268, 941
HaeIII GGCC 4 cut(s) 51, 584, 917, 971
HapII CCGG 7 cut(s) 10, 45, 52, 68, 340, 424, 519
HgaI GACGC 1 cut(s) 607
Hin1II CATG 1 cut(s) 214
HinfI GANTC 8 cut(s) 74, 529, 534, 694, 720, 934, 962, 1055
HpaII CCGG 7 cut(s) 10, 45, 52, 68, 340, 424, 519
HphI GGTGA 7 cut(s) 16, 82, 326, 413, 805, 892, 1057
Hpy166II GTNNAC 1 cut(s) 7
Hpy188I TCNGA 6 cut(s) 100, 264, 376, 403, 699, 1062
Hpy188III TCNNGA 5 cut(s) 495, 519, 601, 956, 1035
Hpy8I GTNNAC 1 cut(s) 7
Hpy99I CGWCG 7 cut(s) 257, 293, 575, 614, 623, 626, 925
HpyAV CCTTC 4 cut(s) 506, 677, 710, 887
HpyCH4IV ACGT 1 cut(s) 573
HpyCH4V TGCA 6 cut(s) 348, 779, 821, 835, 868, 989
HpyF10VI GCNNNNNNNGC 2 cut(s) 471, 832
HpyF3I CTNAG 3 cut(s) 948, 1053, 1061
HpySE526I ACGT 1 cut(s) 573
Hsp92II CATG 1 cut(s) 214
Kpn2I TCCGGA 1 cut(s) 518
Kzo9I GATC 7 cut(s) 110, 403, 485, 497, 515, 521, 603
LguI GCTCTTC 2 cut(s) 264, 566
LmnI GCTCC 2 cut(s) 38, 471
Lsp1109I GCAGC 2 cut(s) 279, 927
LweI GCATC 1 cut(s) 822
MaeII ACGT 1 cut(s) 573
MaeIII GTNAC 5 cut(s) 88, 216, 383, 748, 1077
MalI GATC 7 cut(s) 112, 405, 487, 499, 517, 523, 605
MboI GATC 7 cut(s) 110, 403, 485, 497, 515, 521, 603
MflI RGATCY 5 cut(s) 403, 497, 515, 521, 603
MhlI GDGCHC 1 cut(s) 659
MlsI TGGCCA 1 cut(s) 971
MluCI AATT 7 cut(s) 236, 306, 588, 670, 677, 727, 984
MluNI TGGCCA 1 cut(s) 971
MlyI GAGTC 4 cut(s) 543, 943, 971, 1064
MmeI TCCRAC 3 cut(s) 354, 525, 780
MnlI CCTC 9 cut(s) 130, 322, 499, 605, 789, 907, 924, 952, 1035
Mox20I TGGCCA 1 cut(s) 971
MroI TCCGGA 1 cut(s) 518
MscI TGGCCA 1 cut(s) 971
MseI TTAA 3 cut(s) 482, 996, 1102
Msp20I TGGCCA 1 cut(s) 971
MspCI CTTAAG 1 cut(s) 481
MspI CCGG 7 cut(s) 10, 45, 52, 68, 340, 424, 519
MspR9I CCNGG 2 cut(s) 107, 341
Mva1269I GAATGC 2 cut(s) 781, 809
MvaI CCWGG 1 cut(s) 107
MwoI GCNNNNNNNGC 2 cut(s) 471, 832
NciI CCSGG 1 cut(s) 341
NdeII GATC 7 cut(s) 110, 403, 485, 497, 515, 521, 603
NlaIII CATG 1 cut(s) 214
NlaIV GGNNCC 4 cut(s) 229, 499, 517, 656
NmeAIII GCCGAG 1 cut(s) 931
NmuCI GTSAC 3 cut(s) 88, 748, 1077
NspV TTCGAA 1 cut(s) 415
PciSI GCTCTTC 2 cut(s) 264, 566
PcsI WCGNNNNNNNCGW 2 cut(s) 615, 618
PctI GAATGC 2 cut(s) 781, 809
PfeI GAWTC 4 cut(s) 74, 529, 694, 720
PflFI GACNNNGTC 1 cut(s) 575
PinAI ACCGGT 1 cut(s) 9
PkrI GCNGC 2 cut(s) 269, 942
PleI GAGTC 4 cut(s) 542, 942, 970, 1063
PpsI GAGTC 4 cut(s) 542, 942, 970, 1063
PshAI GACNNNNGTC 1 cut(s) 294
Psp6I CCWGG 1 cut(s) 105
PspEI GGTNACC 2 cut(s) 88, 383
PspGI CCWGG 1 cut(s) 105
PspN4I GGNNCC 4 cut(s) 229, 499, 517, 656
PstNI CAGNNNCTG 1 cut(s) 494
PsuI RGATCY 5 cut(s) 403, 497, 515, 521, 603
PsyI GACNNNGTC 1 cut(s) 575
RsaI GTAC 1 cut(s) 196
RsaNI GTAC 1 cut(s) 195
SapI GCTCTTC 2 cut(s) 264, 566
SaqAI TTAA 3 cut(s) 482, 996, 1102
SatI GCNGC 2 cut(s) 268, 941
Sau3AI GATC 7 cut(s) 110, 403, 485, 497, 515, 521, 603
SchI GAGTC 4 cut(s) 543, 943, 971, 1064
ScrFI CCNGG 2 cut(s) 107, 341
SduI GDGCHC 1 cut(s) 659
SfaNI GCATC 1 cut(s) 822
SfuI TTCGAA 1 cut(s) 415
SmlI CTYRAG 1 cut(s) 481
SmoI CTYRAG 1 cut(s) 481
Sse9I AATT 7 cut(s) 236, 306, 588, 670, 677, 727, 984
SsiI CCGC 3 cut(s) 465, 541, 807
SspI AATATT 1 cut(s) 19
StyD4I CCNGG 2 cut(s) 105, 339
StyI CCWWGG 1 cut(s) 966
TaiI ACGT 1 cut(s) 576
TaqI TCGA 7 cut(s) 72, 113, 323, 415, 532, 612, 644
TaqII GACCGA 1 cut(s) 352
TasI AATT 7 cut(s) 236, 306, 588, 670, 677, 727, 984
TfiI GAWTC 4 cut(s) 74, 529, 694, 720
Tru1I TTAA 3 cut(s) 482, 996, 1102
Tru9I TTAA 3 cut(s) 482, 996, 1102
TseFI GTSAC 3 cut(s) 88, 748, 1077
TseI GCWGC 2 cut(s) 267, 940
Tsp45I GTSAC 3 cut(s) 88, 748, 1077
TspDTI ATGAA 4 cut(s) 199, 398, 906, 1037
TspGWI ACGGA 1 cut(s) 682
Tth111I GACNNNGTC 1 cut(s) 575
Vha464I CTTAAG 1 cut(s) 481
XapI RAATTY 3 cut(s) 306, 670, 677
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.