Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0006748

Physical Location & Seq

Genomic Coordinates Reverse (-)

7443073 .. 7443462

Gene Structure 390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG094900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGCTTGAATTTCATCCTCTTCATTCTCTCTGTCGCATCTCTAGTCCCCACCATCCTCCTCCGAATGCCCCCAACTTCAATGGGTATGGCATTCCTCATGATTTCCGGAATCTCACTGCTCTCTTCATTCGTAAGCTTCTACTCTCACCTCTGCTTCATAACCCACGTCTCACTTCTCCTCGCGTCGTTGATCGGACAAATTCTTGGCATACTGGCCTTGTTTACCAAAGAGCGTGCTACCCTTTTGATGCTCAAGTCCCCCAGGGACCTGAAAGAGGCCAAACTATTGGTGAGGTTGGAATGCGGGGTTTTGATGGCAATGCTGATGATGCAGATGGTGGTGTTGATGTTGAGCTGTGCGGTGCAGAGCTGCTGGGTGAGAGAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

129

Amino Acids

14.28

Weight (kDa)

6.12

Isoelectric Point (pI)

23.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G42725
malus_domestica	MD15G1091800.v1.1 MD15G1217200.v1.1
prunus_persica	Prupe.7G199300_v2.0.a1
pyrus_communis	pycom15g19280
rosa_chinensis	RchiOBHm_Chr1g0362471 RchiOBHm_Chr2g0094891
rosa_laevigata	RLG00000023091 RLG00000033400
rosa_multiflora	Rmu_co8428099.1_g000001 Rmu_sc0004969.1_g000003 Rmu_sc0041750.1_g000001
rosa_roxburghii	Rroxscaffold_2G00107930
rosa_rugosa	Rorug02G0048700.1
rosa_samantha	Rh1AG014600 Rh1DG034300 Rh2AG095200 Rh2AG096300 Rh2BG096200 Rh2CG098200 Rh2DG094800 Rh2DG094900 Rh6CG464700 Rh6DG214600 Rh6DG451300
rosa_wichuraiana	Rw2G007160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	183
AccIII	TCCGGA	1 cut(s)	105
AciI	CCGC	2 cut(s)	304, 360
AcsI	RAATTY	2 cut(s)	8, 199
AfiI	CCNNNNNNNGG	1 cut(s)	275
AgsI	TTSAA	2 cut(s)	8, 79
AjiI	CACGTC	1 cut(s)	167
AjnI	CCWGG	1 cut(s)	261
AluBI	AGCT	3 cut(s)	136, 355, 370
AluI	AGCT	3 cut(s)	136, 355, 370
Alw26I	GTCTC	1 cut(s)	173
Aor13HI	TCCGGA	1 cut(s)	105
AoxI	GGCC	2 cut(s)	214, 277
ApeKI	GCWGC	1 cut(s)	370
ApoI	RAATTY	2 cut(s)	8, 199
AspS9I	GGNCC	1 cut(s)	266
AsuHPI	GGTGA	3 cut(s)	138, 302, 389
AvaII	GGWCC	1 cut(s)	266
BbvI	GCAGC	1 cut(s)	357
BccI	CCATC	3 cut(s)	60, 308, 329
BciT130I	CCWGG	1 cut(s)	263
BcoDI	GTCTC	1 cut(s)	173
BfaI	CTAG	1 cut(s)	42
BisI	GCNGC	1 cut(s)	371
BlsI	GCNGC	1 cut(s)	372
Bme1390I	CCNGG	1 cut(s)	263
Bme18I	GGWCC	1 cut(s)	266
BmgBI	CACGTC	1 cut(s)	167
BmgT120I	GGNCC	1 cut(s)	266
BmiI	GGNNCC	1 cut(s)	267
BmrFI	CCNGG	1 cut(s)	263
BmsI	GCATC	3 cut(s)	45, 238, 319
BpuEI	CTTGAG	1 cut(s)	237
BsaJI	CCNNGG	2 cut(s)	261, 262
BsaWI	WCCGGW	1 cut(s)	105
Bsc4I	CCNNNNNNNGG	1 cut(s)	275
Bse1I	ACTGG	1 cut(s)	217
Bse3DI	GCAATG	1 cut(s)	325
BseAI	TCCGGA	1 cut(s)	105
BseBI	CCWGG	1 cut(s)	263
BseDI	CCNNGG	2 cut(s)	261, 262
BseGI	GGATG	2 cut(s)	13, 52
BseLI	CCNNNNNNNGG	1 cut(s)	275
BseMI	GCAATG	1 cut(s)	325
BseNI	ACTGG	1 cut(s)	217
BseRI	GAGGAG	2 cut(s)	48, 168
BseXI	GCAGC	1 cut(s)	357
BseYI	CCCAGC	1 cut(s)	373
BsgI	GTGCAG	1 cut(s)	384
Bsh1236I	CGCG	1 cut(s)	183
BshFI	GGCC	2 cut(s)	216, 279
BsiSI	CCGG	1 cut(s)	106
BslFI	GGGAC	3 cut(s)	30, 242, 279
BslI	CCNNNNNNNGG	1 cut(s)	275
BsmAI	GTCTC	1 cut(s)	173
BsmBI	CGTCTC	1 cut(s)	173
BsmFI	GGGAC	3 cut(s)	30, 242, 279
BsmI	GAATGC	3 cut(s)	70, 90, 306
BsnI	GGCC	2 cut(s)	216, 279
Bsp13I	TCCGGA	1 cut(s)	105
Bsp143I	GATC	1 cut(s)	190
BspACI	CCGC	2 cut(s)	304, 360
BspANI	GGCC	2 cut(s)	216, 279
BspEI	TCCGGA	1 cut(s)	105
BspFNI	CGCG	1 cut(s)	183
BspHI	TCATGA	1 cut(s)	97
BspLI	GGNNCC	1 cut(s)	267
BsrDI	GCAATG	1 cut(s)	325
BsrI	ACTGG	1 cut(s)	217
BssECI	CCNNGG	2 cut(s)	261, 262
BssMI	GATC	1 cut(s)	190
Bst2UI	CCWGG	1 cut(s)	263
Bst6I	CTCTTC	2 cut(s)	24, 128
BstC8I	GCNNGC	1 cut(s)	235
BstENI	CCTNNNNNAGG	1 cut(s)	273
BstF5I	GGATG	2 cut(s)	13, 52
BstFNI	CGCG	1 cut(s)	183
BstKTI	GATC	1 cut(s)	193
BstMAI	GTCTC	1 cut(s)	173
BstMBI	GATC	1 cut(s)	190
BstMWI	GCNNNNNNNGC	1 cut(s)	329
BstNI	CCWGG	1 cut(s)	263
BstSCI	CCNGG	1 cut(s)	261
BstUI	CGCG	1 cut(s)	183
BstV1I	GCAGC	1 cut(s)	357
BstXI	CCANNNNNNTGG	1 cut(s)	287
BsuRI	GGCC	2 cut(s)	216, 279
BtrI	CACGTC	1 cut(s)	167
BtsCI	GGATG	2 cut(s)	13, 52
BtsI	GCAGTG	1 cut(s)	114
BtsIMutI	CAGTG	1 cut(s)	114
Cac8I	GCNNGC	1 cut(s)	235
CciI	TCATGA	1 cut(s)	97
Cfr13I	GGNCC	1 cut(s)	266
CseI	GACGC	1 cut(s)	172
CviAII	CATG	1 cut(s)	98
CviJI	RGCY	5 cut(s)	136, 216, 279, 355, 370
CviKI_1	RGCY	5 cut(s)	136, 216, 279, 355, 370
DpnI	GATC	1 cut(s)	192
DpnII	GATC	1 cut(s)	190
Eam1104I	CTCTTC	2 cut(s)	24, 128
EarI	CTCTTC	2 cut(s)	24, 128
Eco47I	GGWCC	1 cut(s)	266
EcoNI	CCTNNNNNAGG	1 cut(s)	273
EcoO109I	RGGNCCY	1 cut(s)	266
EcoRII	CCWGG	1 cut(s)	261
Esp3I	CGTCTC	1 cut(s)	173
FaeI	CATG	1 cut(s)	101
FaiI	YATR	5 cut(s)	87, 99, 159, 210, 388
FaqI	GGGAC	3 cut(s)	30, 242, 279
FatI	CATG	1 cut(s)	97
FauI	CCCGC	1 cut(s)	297
Fnu4HI	GCNGC	1 cut(s)	371
FokI	GGATG	1 cut(s)	39
Fsp4HI	GCNGC	1 cut(s)	371
FspBI	CTAG	1 cut(s)	42
GluI	GCNGC	1 cut(s)	371
GsaI	CCCAGC	1 cut(s)	377
HaeIII	GGCC	2 cut(s)	216, 279
HapII	CCGG	1 cut(s)	106
HgaI	GACGC	1 cut(s)	172
Hin1II	CATG	1 cut(s)	101
HindIII	AAGCTT	1 cut(s)	134
HinfI	GANTC	1 cut(s)	109
HpaII	CCGG	1 cut(s)	106
HphI	GGTGA	3 cut(s)	138, 302, 389
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188I	TCNGA	2 cut(s)	63, 195
Hpy188III	TCNNGA	2 cut(s)	98, 106
Hpy8I	GTNNAC	1 cut(s)	223
Hpy99I	CGWCG	1 cut(s)	188
HpyCH4IV	ACGT	1 cut(s)	166
HpyCH4V	TGCA	2 cut(s)	332, 365
HpyF10VI	GCNNNNNNNGC	1 cut(s)	329
HpySE526I	ACGT	1 cut(s)	166
Hsp92II	CATG	1 cut(s)	101
Kpn2I	TCCGGA	1 cut(s)	105
Kzo9I	GATC	1 cut(s)	190
LpnPI	CCDG	6 cut(s)	119, 198, 248, 275, 282, 359
Lsp1109I	GCAGC	1 cut(s)	357
LweI	GCATC	3 cut(s)	45, 238, 319
MaeI	CTAG	1 cut(s)	42
MaeII	ACGT	1 cut(s)	166
MalI	GATC	1 cut(s)	192
MboI	GATC	1 cut(s)	190
MboII	GAAGA	2 cut(s)	11, 115
MluCI	AATT	2 cut(s)	8, 199
MmeI	TCCRAC	1 cut(s)	277
MnlI	CCTC	8 cut(s)	27, 66, 69, 105, 159, 189, 269, 286
MroI	TCCGGA	1 cut(s)	105
MspI	CCGG	1 cut(s)	106
MspR9I	CCNGG	1 cut(s)	263
Mva1269I	GAATGC	3 cut(s)	70, 90, 306
MvaI	CCWGG	1 cut(s)	263
MvnI	CGCG	1 cut(s)	183
MwoI	GCNNNNNNNGC	1 cut(s)	329
NdeII	GATC	1 cut(s)	190
NlaIII	CATG	1 cut(s)	101
NlaIV	GGNNCC	1 cut(s)	267
PagI	TCATGA	1 cut(s)	97
PasI	CCCWGGG	1 cut(s)	262
PctI	GAATGC	3 cut(s)	70, 90, 306
PfeI	GAWTC	1 cut(s)	109
PkrI	GCNGC	1 cut(s)	372
PpuMI	RGGWCCY	1 cut(s)	266
Psp5II	RGGWCCY	1 cut(s)	266
Psp6I	CCWGG	1 cut(s)	261
PspFI	CCCAGC	1 cut(s)	373
PspGI	CCWGG	1 cut(s)	261
PspN4I	GGNNCC	1 cut(s)	267
PspPI	GGNCC	1 cut(s)	266
PspPPI	RGGWCCY	1 cut(s)	266
SatI	GCNGC	1 cut(s)	371
Sau3AI	GATC	1 cut(s)	190
Sau96I	GGNCC	1 cut(s)	266
ScrFI	CCNGG	1 cut(s)	263
SetI	ASST	7 cut(s)	138, 151, 169, 271, 297, 357, 372
SfaNI	GCATC	3 cut(s)	45, 238, 319
SinI	GGWCC	1 cut(s)	266
SmlI	CTYRAG	1 cut(s)	252
SmoI	CTYRAG	1 cut(s)	252
Sse9I	AATT	2 cut(s)	8, 199
SsiI	CCGC	2 cut(s)	304, 360
SspMI	CTAG	1 cut(s)	42
StyD4I	CCNGG	1 cut(s)	261
TaiI	ACGT	1 cut(s)	169
TasI	AATT	2 cut(s)	8, 199
TfiI	GAWTC	1 cut(s)	109
TscAI	CASTG	1 cut(s)	121
TseI	GCWGC	1 cut(s)	370
TspDTI	ATGAA	3 cut(s)	11, 115, 146
TspRI	CASTG	1 cut(s)	121
VpaK11BI	GGWCC	1 cut(s)	266
XagI	CCTNNNNNAGG	1 cut(s)	273
XapI	RAATTY	2 cut(s)	8, 199
XspI	CTAG	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.