Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0006748

Physical Location & Seq

Genomic Coordinates Forward (+)

5101998 .. 5102378

Gene Structure 381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG034300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGAAGAAGAGGAGTCGGCTGCTTGCTAAGGTTCAAGAGGAGGCCTTGGCCAATGTTGAAAAAACTGTAGAGATTAAGGCTAATGAGTTTGATGAGAAGATGAAGAACAAGTATGGACAGAGGGTGAAGCCTGAGTCTCTGAGCTGCTTGTATGGGTCACTGTGGTTGTGGCCATTGGGTCATATATGTGAAGTAAAGATTATGAAAAAAAAAATGGATGATTTGGATTGGATTCAAGGACATGAACAATTGTTGGGTTTTTGTTTTTGTATTTTGGCGTCTTGGTTAATCGTTGGCTCAAAAGCCTCTAACAAGAGGCTCCAACAAGTGTGTGTTTCATATCGGAGCCTCCAACAAATACCCCTTCTTCTACGGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

126

Amino Acids

14.65

Weight (kDa)

9.38

Isoelectric Point (pI)

59.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G42725
malus_domestica	MD15G1091800.v1.1 MD15G1217200.v1.1
prunus_persica	Prupe.7G199300_v2.0.a1
pyrus_communis	pycom15g19280
rosa_chinensis	RchiOBHm_Chr1g0362471 RchiOBHm_Chr2g0094891
rosa_laevigata	RLG00000023091 RLG00000033400
rosa_multiflora	Rmu_co8428099.1_g000001 Rmu_sc0004969.1_g000003 Rmu_sc0041750.1_g000001
rosa_roxburghii	Rroxscaffold_2G00107930
rosa_rugosa	Rorug02G0048700.1
rosa_samantha	Rh1AG014600 Rh1DG034300 Rh2AG095200 Rh2AG096300 Rh2BG096200 Rh2CG098200 Rh2DG094800 Rh2DG094900 Rh6CG464700 Rh6DG214600 Rh6DG451300
rosa_wichuraiana	Rw2G007160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	2 cut(s)	48, 170
AcyI	GRCGYC	1 cut(s)	278
AgsI	TTSAA	3 cut(s)	35, 59, 236
AluBI	AGCT	1 cut(s)	144
AluI	AGCT	1 cut(s)	144
Alw26I	GTCTC	1 cut(s)	141
AoxI	GGCC	3 cut(s)	42, 48, 170
ApeKI	GCWGC	2 cut(s)	19, 144
AsuHPI	GGTGA	1 cut(s)	136
BalI	TGGCCA	2 cut(s)	50, 172
BbvI	GCAGC	2 cut(s)	6, 131
BcoDI	GTCTC	1 cut(s)	141
BfmI	CTRYAG	1 cut(s)	66
BisI	GCNGC	2 cut(s)	20, 145
BlsI	GCNGC	2 cut(s)	21, 146
BmiI	GGNNCC	2 cut(s)	320, 347
Bpu10I	CCTNAGC	1 cut(s)	27
BsaHI	GRCGYC	1 cut(s)	278
BsaJI	CCNNGG	1 cut(s)	45
BseDI	CCNNGG	1 cut(s)	45
BseGI	GGATG	1 cut(s)	223
BseMII	CTCAG	2 cut(s)	123, 131
BseRI	GAGGAG	2 cut(s)	25, 53
BseXI	GCAGC	2 cut(s)	6, 131
BshFI	GGCC	3 cut(s)	44, 50, 172
BsmAI	GTCTC	1 cut(s)	141
BsnI	GGCC	3 cut(s)	44, 50, 172
BspANI	GGCC	3 cut(s)	44, 50, 172
BspCNI	CTCAG	2 cut(s)	124, 132
BspLI	GGNNCC	2 cut(s)	320, 347
BssECI	CCNNGG	1 cut(s)	45
BssNI	GRCGYC	1 cut(s)	278
BssT1I	CCWWGG	1 cut(s)	45
Bst4CI	ACNGT	2 cut(s)	67, 162
Bst6I	CTCTTC	1 cut(s)	2
BstACI	GRCGYC	1 cut(s)	278
BstC8I	GCNNGC	1 cut(s)	24
BstDEI	CTNAG	3 cut(s)	27, 132, 140
BstF5I	GGATG	1 cut(s)	223
BstMAI	GTCTC	1 cut(s)	141
BstSFI	CTRYAG	1 cut(s)	66
BstV1I	GCAGC	2 cut(s)	6, 131
BsuRI	GGCC	3 cut(s)	44, 50, 172
BtsCI	GGATG	1 cut(s)	223
BtsIMutI	CAGTG	1 cut(s)	158
Cac8I	GCNNGC	1 cut(s)	24
CseI	GACGC	1 cut(s)	267
CviAII	CATG	1 cut(s)	242
DdeI	CTNAG	3 cut(s)	27, 132, 140
EaeI	YGGCCR	2 cut(s)	48, 170
Eam1104I	CTCTTC	1 cut(s)	2
EarI	CTCTTC	1 cut(s)	2
Eco130I	CCWWGG	1 cut(s)	45
Eco147I	AGGCCT	1 cut(s)	44
EcoT14I	CCWWGG	1 cut(s)	45
ErhI	CCWWGG	1 cut(s)	45
FaeI	CATG	1 cut(s)	245
FaiI	YATR	8 cut(s)	114, 153, 183, 185, 187, 203, 243, 340
FatI	CATG	1 cut(s)	241
Fnu4HI	GCNGC	2 cut(s)	20, 145
FokI	GGATG	1 cut(s)	230
Fsp4HI	GCNGC	2 cut(s)	20, 145
GluI	GCNGC	2 cut(s)	20, 145
HaeIII	GGCC	3 cut(s)	44, 50, 172
HgaI	GACGC	1 cut(s)	267
Hin1I	GRCGYC	1 cut(s)	278
Hin1II	CATG	1 cut(s)	245
HinfI	GANTC	3 cut(s)	13, 134, 232
HphI	GGTGA	1 cut(s)	136
Hpy188I	TCNGA	2 cut(s)	141, 345
Hpy188III	TCNNGA	1 cut(s)	35
HpyAV	CCTTC	1 cut(s)	374
HpyCH4III	ACNGT	2 cut(s)	67, 162
HpyF3I	CTNAG	3 cut(s)	27, 132, 140
Hsp92I	GRCGYC	1 cut(s)	278
Hsp92II	CATG	1 cut(s)	245
LmnI	GCTCC	2 cut(s)	324, 345
LpnPI	CCDG	1 cut(s)	144
Lsp1109I	GCAGC	2 cut(s)	6, 131
MaeIII	GTNAC	1 cut(s)	156
MboII	GAAGA	5 cut(s)	16, 19, 109, 115, 359
MfeI	CAATTG	1 cut(s)	248
MlsI	TGGCCA	2 cut(s)	50, 172
MluCI	AATT	1 cut(s)	248
MluNI	TGGCCA	2 cut(s)	50, 172
MlyI	GAGTC	2 cut(s)	22, 143
MmeI	TCCRAC	2 cut(s)	346, 376
MnlI	CCTC	7 cut(s)	3, 31, 34, 114, 309, 316, 359
Mox20I	TGGCCA	2 cut(s)	50, 172
MscI	TGGCCA	2 cut(s)	50, 172
MseI	TTAA	2 cut(s)	75, 287
MslI	CAYNNNNRTG	1 cut(s)	186
Msp20I	TGGCCA	2 cut(s)	50, 172
MunI	CAATTG	1 cut(s)	248
NlaIII	CATG	1 cut(s)	245
NlaIV	GGNNCC	2 cut(s)	320, 347
NmuCI	GTSAC	1 cut(s)	156
PceI	AGGCCT	1 cut(s)	44
PfeI	GAWTC	1 cut(s)	232
PkrI	GCNGC	2 cut(s)	21, 146
PleI	GAGTC	2 cut(s)	21, 142
PpsI	GAGTC	2 cut(s)	21, 142
PspN4I	GGNNCC	2 cut(s)	320, 347
RseI	CAYNNNNRTG	1 cut(s)	186
SaqAI	TTAA	2 cut(s)	75, 287
SatI	GCNGC	2 cut(s)	20, 145
SchI	GAGTC	2 cut(s)	22, 143
SetI	ASST	2 cut(s)	33, 146
SfcI	CTRYAG	1 cut(s)	66
SmiMI	CAYNNNNRTG	1 cut(s)	186
Sse9I	AATT	1 cut(s)	248
SseBI	AGGCCT	1 cut(s)	44
StuI	AGGCCT	1 cut(s)	44
StyI	CCWWGG	1 cut(s)	45
TaaI	ACNGT	2 cut(s)	67, 162
TasI	AATT	1 cut(s)	248
TfiI	GAWTC	1 cut(s)	232
Tru1I	TTAA	2 cut(s)	75, 287
Tru9I	TTAA	2 cut(s)	75, 287
TscAI	CASTG	1 cut(s)	165
TseFI	GTSAC	1 cut(s)	156
TseI	GCWGC	2 cut(s)	19, 144
Tsp45I	GTSAC	1 cut(s)	156
TspDTI	ATGAA	5 cut(s)	17, 116, 218, 258, 327
TspRI	CASTG	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.