Rroxscaffold_2G00107930

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0006748
Physical Location & Seq
Forward (+)
31956369 .. 31959904
3536 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00107930.1

Sequence Viewer

Length: 735 bp
ATGTCTTCTCCAATTGAAATCTTGCTTGCGTTGATTGCATCCGATAGTTGGATTAGTGAGGACGAGGAAATTCCAGGCCACGGTGGTCGCCACCTCATAACTCATGTAGCCCAGAACCCAACTGATTTCTATCCCATTTTTGTATTTGTTTTTACAATTTTAGTTTGCTTACATATCTCTGCTCGGGAAGGATTGGAAGCCGAGAGAGAGGCCACGACGAAGAAGAGGAGTCGGCGGCTTGCTAAGGTTCAAGAGGAGCCCATGGAGAATGCCGAAAAAATTGCAGAGATTAAGGCTAAAGAGTTTGTTGAGAAGATGAAGATATGGACAGAGCGTGAAGCCCGACACCCTAGCCTCTCCATCTCGATCTACACCTCCAACCGCGACGCCACTTGCGACCTCAACTCGGCCAAAACCCGGCCTCCAAGCTCCATAGCCTCTCCATCTCGATCTACACGACCAACCGCGGTGCCACATGCGGGCTCAACTCCGCCAAGCTCTTGGGCCGAGTCACCTGCGCCCCGTGGTGTACCAGCTGTTCATGGCCTCCAAAACCATCACCGATTTGCCGAGCTTGTTGCCGGTGAAGGAGAAGATGGGAGGGTGGCGAGCTCGGCATTTATGGTTAGGCGTTTGGGGGATTTGAGGGAATTGGGTCCGAGGGTGGCGGAGAGGGGTTTGTGGGAAGAGGAAGTGATGAAGATTGACCAAGTGAAGGAGAGTGATGAGGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1

Protein Analysis

244

Amino Acids

27.05

Weight (kDa)

5.89

Isoelectric Point (pI)

64.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 523
Acc36I ACCTGC 1 cut(s) 523
AccB1I GGYRCC 1 cut(s) 469
AccII CGCG 2 cut(s) 384, 467
AciI CCGC 7 cut(s) 235, 382, 465, 467, 479, 491, 668
AcoI YGGCCR 1 cut(s) 408
AcsI RAATTY 1 cut(s) 69
AcyI GRCGYC 1 cut(s) 387
AfaI GTAC 1 cut(s) 531
AfiI CCNNNNNNNGG 6 cut(s) 48, 80, 406, 417, 479, 715
AgsI TTSAA 2 cut(s) 17, 251
AjnI CCWGG 1 cut(s) 73
AluBI AGCT 5 cut(s) 429, 498, 536, 574, 612
AluI AGCT 5 cut(s) 429, 498, 536, 574, 612
Alw21I GWGCWC 1 cut(s) 614
Ama87I CYCGRG 1 cut(s) 183
AoxI GGCC 6 cut(s) 76, 210, 408, 419, 504, 544
ApoI RAATTY 1 cut(s) 69
AspLEI GCGC 1 cut(s) 520
AspS9I GGNCC 2 cut(s) 504, 656
AsuC2I CCSGG 1 cut(s) 418
AsuHPI GGTGA 3 cut(s) 504, 551, 596
AvaI CYCGRG 1 cut(s) 183
AvaII GGWCC 1 cut(s) 656
BanI GGYRCC 1 cut(s) 469
BanII GRGCYC 3 cut(s) 261, 485, 614
Bbv12I GWGCWC 1 cut(s) 614
BccI CCATC 4 cut(s) 368, 451, 564, 590
BcgI CGANNNNNNTGC 6 cut(s) 263, 297, 497, 531, 560, 594
BciT130I CCWGG 1 cut(s) 75
BcnI CCSGG 1 cut(s) 418
BfaI CTAG 1 cut(s) 351
BfuAI ACCTGC 1 cut(s) 523
BisI GCNGC 1 cut(s) 236
BlsI GCNGC 1 cut(s) 237
Bme1390I CCNGG 2 cut(s) 75, 418
Bme18I GGWCC 1 cut(s) 656
BmeT110I CYCGRG 1 cut(s) 183
BmgT120I GGNCC 2 cut(s) 504, 656
BmiI GGNNCC 3 cut(s) 258, 471, 657
BmrFI CCNGG 2 cut(s) 75, 418
BmsI GCATC 1 cut(s) 47
Bpu10I CCTNAGC 1 cut(s) 243
BpuMI CCSGG 1 cut(s) 418
BsaBI GATNNNNATC 1 cut(s) 129
BsaHI GRCGYC 1 cut(s) 387
BsaJI CCNNGG 5 cut(s) 79, 261, 465, 523, 659
BsaXI ACNNNNNCTCC 2 cut(s) 406, 436
Bsc4I CCNNNNNNNGG 6 cut(s) 48, 80, 406, 417, 479, 715
Bse118I RCCGGY 1 cut(s) 581
Bse8I GATNNNNATC 1 cut(s) 129
BseBI CCWGG 1 cut(s) 75
BseDI CCNNGG 5 cut(s) 79, 261, 465, 523, 659
BseGI GGATG 1 cut(s) 38
BseJI GATNNNNATC 1 cut(s) 129
BseLI CCNNNNNNNGG 6 cut(s) 48, 80, 406, 417, 479, 715
BseRI GAGGAG 2 cut(s) 241, 269
Bsh1236I CGCG 2 cut(s) 384, 467
BshFI GGCC 6 cut(s) 78, 212, 410, 421, 506, 546
BshNI GGYRCC 1 cut(s) 469
BsiHKAI GWGCWC 1 cut(s) 614
BsiHKCI CYCGRG 1 cut(s) 183
BsiSI CCGG 2 cut(s) 418, 582
BslI CCNNNNNNNGG 6 cut(s) 48, 80, 406, 417, 479, 715
BsmI GAATGC 1 cut(s) 274
BsnI GGCC 6 cut(s) 78, 212, 410, 421, 506, 546
BsoBI CYCGRG 1 cut(s) 183
Bsp1286I GDGCHC 3 cut(s) 261, 485, 614
Bsp143I GATC 2 cut(s) 366, 449
Bsp19I CCATGG 1 cut(s) 261
BspACI CCGC 7 cut(s) 235, 382, 465, 467, 479, 491, 668
BspANI GGCC 6 cut(s) 78, 212, 410, 421, 506, 546
BspFNI CGCG 2 cut(s) 384, 467
BspLI GGNNCC 3 cut(s) 258, 471, 657
BspMI ACCTGC 1 cut(s) 523
BspT107I GGYRCC 1 cut(s) 469
BsrFI RCCGGY 1 cut(s) 581
BssAI RCCGGY 1 cut(s) 581
BssECI CCNNGG 5 cut(s) 79, 261, 465, 523, 659
BssMI GATC 2 cut(s) 366, 449
BssNI GRCGYC 1 cut(s) 387
BssT1I CCWWGG 1 cut(s) 261
Bst2UI CCWGG 1 cut(s) 75
Bst4CI ACNGT 1 cut(s) 83
Bst6I CTCTTC 2 cut(s) 218, 681
BstACI GRCGYC 1 cut(s) 387
BstC8I GCNNGC 4 cut(s) 27, 240, 481, 610
BstDEI CTNAG 1 cut(s) 243
BstDSI CCRYGG 4 cut(s) 79, 261, 465, 523
BstF5I GGATG 1 cut(s) 38
BstFNI CGCG 2 cut(s) 384, 467
BstHHI GCGC 1 cut(s) 520
BstKTI GATC 2 cut(s) 369, 452
BstMBI GATC 2 cut(s) 366, 449
BstMWI GCNNNNNNNGC 2 cut(s) 35, 614
BstNI CCWGG 1 cut(s) 75
BstNSI RCATGY 1 cut(s) 479
BstSCI CCNGG 2 cut(s) 73, 416
BstUI CGCG 2 cut(s) 384, 467
BstXI CCANNNNNNTGG 1 cut(s) 501
BsuRI GGCC 6 cut(s) 78, 212, 410, 421, 506, 546
BtgI CCRYGG 4 cut(s) 79, 261, 465, 523
BtsCI GGATG 1 cut(s) 38
BveI ACCTGC 1 cut(s) 523
Cac8I GCNNGC 4 cut(s) 27, 240, 481, 610
CfoI GCGC 1 cut(s) 520
Cfr10I RCCGGY 1 cut(s) 581
Cfr13I GGNCC 2 cut(s) 504, 656
Cfr42I CCGCGG 1 cut(s) 468
CseI GACGC 1 cut(s) 395
Csp6I GTAC 1 cut(s) 530
CviAII CATG 4 cut(s) 104, 262, 476, 542
CviQI GTAC 1 cut(s) 530
DdeI CTNAG 1 cut(s) 243
DpnI GATC 2 cut(s) 368, 451
DpnII GATC 2 cut(s) 366, 449
EaeI YGGCCR 1 cut(s) 408
Eam1104I CTCTTC 2 cut(s) 218, 681
EarI CTCTTC 2 cut(s) 218, 681
EciI GGCGGA 2 cut(s) 480, 683
Ecl136II GAGCTC 1 cut(s) 612
Eco130I CCWWGG 1 cut(s) 261
Eco24I GRGCYC 3 cut(s) 261, 485, 614
Eco47I GGWCC 1 cut(s) 656
Eco53kI GAGCTC 1 cut(s) 612
Eco88I CYCGRG 1 cut(s) 183
EcoICRI GAGCTC 1 cut(s) 612
EcoRII CCWGG 1 cut(s) 73
EcoT14I CCWWGG 1 cut(s) 261
EcoT38I GRGCYC 3 cut(s) 261, 485, 614
ErhI CCWWGG 1 cut(s) 261
FaeI CATG 4 cut(s) 107, 265, 479, 545
FaiI YATR 9 cut(s) 98, 105, 174, 263, 325, 434, 477, 543, 623
FatI CATG 4 cut(s) 103, 261, 475, 541
FauI CCCGC 1 cut(s) 472
Fnu4HI GCNGC 1 cut(s) 236
FokI GGATG 1 cut(s) 25
FriOI GRGCYC 3 cut(s) 261, 485, 614
Fsp4HI GCNGC 1 cut(s) 236
FspBI CTAG 1 cut(s) 351
GlaI GCGC 1 cut(s) 519
GluI GCNGC 1 cut(s) 236
HaeIII GGCC 6 cut(s) 78, 212, 410, 421, 506, 546
HapII CCGG 2 cut(s) 418, 582
HgaI GACGC 1 cut(s) 395
HhaI GCGC 1 cut(s) 520
Hin1I GRCGYC 1 cut(s) 387
Hin1II CATG 4 cut(s) 107, 265, 479, 545
Hin6I GCGC 1 cut(s) 518
HinP1I GCGC 1 cut(s) 518
HinfI GANTC 2 cut(s) 229, 509
HpaII CCGG 2 cut(s) 418, 582
HphI GGTGA 3 cut(s) 504, 551, 596
Hpy166II GTNNAC 1 cut(s) 530
Hpy188I TCNGA 2 cut(s) 43, 660
Hpy188III TCNNGA 4 cut(s) 185, 251, 364, 447
Hpy8I GTNNAC 1 cut(s) 530
Hpy99I CGWCG 2 cut(s) 220, 389
HpyAV CCTTC 3 cut(s) 182, 581, 709
HpyCH4III ACNGT 1 cut(s) 83
HpyCH4V TGCA 2 cut(s) 38, 284
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 614
HpyF3I CTNAG 1 cut(s) 243
Hsp92I GRCGYC 1 cut(s) 387
Hsp92II CATG 4 cut(s) 107, 265, 479, 545
HspAI GCGC 1 cut(s) 518
KspI CCGCGG 1 cut(s) 468
Kzo9I GATC 2 cut(s) 366, 449
LmnI GCTCC 2 cut(s) 256, 434
LpnPI CCDG 7 cut(s) 60, 87, 125, 431, 528, 546, 595
LweI GCATC 1 cut(s) 47
MaeI CTAG 1 cut(s) 351
MaeIII GTNAC 1 cut(s) 510
MalI GATC 2 cut(s) 368, 451
MboI GATC 2 cut(s) 366, 449
MboII GAAGA 7 cut(s) 232, 235, 325, 331, 605, 698, 712
MfeI CAATTG 1 cut(s) 12
MhlI GDGCHC 3 cut(s) 261, 485, 614
MluCI AATT 5 cut(s) 12, 69, 156, 279, 650
MlyI GAGTC 2 cut(s) 238, 518
MmeI TCCRAC 2 cut(s) 29, 402
MseI TTAA 1 cut(s) 291
MspA1I CMGCKG 2 cut(s) 467, 536
MspI CCGG 2 cut(s) 418, 582
MspR9I CCNGG 2 cut(s) 75, 418
MunI CAATTG 1 cut(s) 12
Mva1269I GAATGC 1 cut(s) 274
MvaI CCWGG 1 cut(s) 75
MvnI CGCG 2 cut(s) 384, 467
MwoI GCNNNNNNNGC 2 cut(s) 35, 614
NciI CCSGG 1 cut(s) 418
NcoI CCATGG 1 cut(s) 261
NdeII GATC 2 cut(s) 366, 449
NlaIII CATG 4 cut(s) 107, 265, 479, 545
NlaIV GGNNCC 3 cut(s) 258, 471, 657
NmeAIII GCCGAG 5 cut(s) 226, 386, 532, 593, 595
NmuCI GTSAC 1 cut(s) 510
NspI RCATGY 1 cut(s) 479
PaqCI CACCTGC 1 cut(s) 523
PcsI WCGNNNNNNNCGW 2 cut(s) 393, 454
PctI GAATGC 1 cut(s) 274
PkrI GCNGC 1 cut(s) 237
PleI GAGTC 2 cut(s) 237, 517
PpsI GAGTC 2 cut(s) 237, 517
Psp124BI GAGCTC 1 cut(s) 614
Psp6I CCWGG 1 cut(s) 73
PspGI CCWGG 1 cut(s) 73
PspN4I GGNNCC 3 cut(s) 258, 471, 657
PspPI GGNCC 2 cut(s) 504, 656
PsrI GAACNNNNNNTAC 2 cut(s) 522, 554
PvuII CAGCTG 1 cut(s) 536
RsaI GTAC 1 cut(s) 531
RsaNI GTAC 1 cut(s) 530
SacI GAGCTC 1 cut(s) 614
SacII CCGCGG 1 cut(s) 468
SaqAI TTAA 1 cut(s) 291
SatI GCNGC 1 cut(s) 236
Sau3AI GATC 2 cut(s) 366, 449
Sau96I GGNCC 2 cut(s) 504, 656
SchI GAGTC 2 cut(s) 238, 518
ScrFI CCNGG 2 cut(s) 75, 418
SduI GDGCHC 3 cut(s) 261, 485, 614
SfaNI GCATC 1 cut(s) 47
Sfr303I CCGCGG 1 cut(s) 468
SgrBI CCGCGG 1 cut(s) 468
SinI GGWCC 1 cut(s) 656
Sse9I AATT 5 cut(s) 12, 69, 156, 279, 650
SsiI CCGC 7 cut(s) 235, 382, 465, 467, 479, 491, 668
SspMI CTAG 1 cut(s) 351
SstI GAGCTC 1 cut(s) 614
StyD4I CCNGG 2 cut(s) 73, 416
StyI CCWWGG 1 cut(s) 261
TaaI ACNGT 1 cut(s) 83
TaqI TCGA 2 cut(s) 365, 448
TasI AATT 5 cut(s) 12, 69, 156, 279, 650
TauI GCSGC 1 cut(s) 238
Tru1I TTAA 1 cut(s) 291
Tru9I TTAA 1 cut(s) 291
TseFI GTSAC 1 cut(s) 510
Tsp45I GTSAC 1 cut(s) 510
TspDTI ATGAA 3 cut(s) 332, 530, 713
VpaK11BI GGWCC 1 cut(s) 656
XapI RAATTY 1 cut(s) 69
XceI RCATGY 1 cut(s) 479
XspI CTAG 1 cut(s) 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.