Rh1AG014600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0006748
Physical Location & Seq
Reverse (-)
2269632 .. 2269940
309 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG014600.1

Sequence Viewer

Length: 309 bp
ATGTTTCATAACCCACGTCTCCCTTCTACTCTCTCTCGAGAGGCCACGACGAAGAAGTTGAGTCAGCGGCTTGCTAAGGTTCAAGAGGAGCCCATGGCCAATGCTGAAAAAATTGCAGAAATTAAAGCTAAAGAGTTTGATGAGAAGATGAAGAACAAGTATAGACAGAGGGTGAAGCCTGAGTCTCTGGGTTGTTTGTATAGGTCACTGTGGTTGTGGCCATTGGGTTATGTATGTGAAGTAAAGCTTATGAAAAATAAAATAAAATGGATGATTTGGATTGGATTCAAGGACATGAACATGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1

Protein Analysis

102

Amino Acids

12.18

Weight (kDa)

9.83

Isoelectric Point (pI)

43.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 67
AcoI YGGCCR 2 cut(s) 96, 218
AgsI TTSAA 2 cut(s) 83, 289
AjiI CACGTC 1 cut(s) 17
AluBI AGCT 2 cut(s) 128, 247
AluI AGCT 2 cut(s) 128, 247
Alw26I GTCTC 2 cut(s) 23, 189
Ama87I CYCGRG 1 cut(s) 36
AoxI GGCC 3 cut(s) 42, 96, 218
AsuHPI GGTGA 1 cut(s) 184
AvaI CYCGRG 1 cut(s) 36
BalI TGGCCA 2 cut(s) 98, 220
BanII GRGCYC 1 cut(s) 93
BcoDI GTCTC 2 cut(s) 23, 189
BisI GCNGC 1 cut(s) 68
BlsI GCNGC 1 cut(s) 69
BmeT110I CYCGRG 1 cut(s) 36
BmgBI CACGTC 1 cut(s) 17
BmiI GGNNCC 1 cut(s) 90
Bpu10I CCTNAGC 1 cut(s) 75
BsaJI CCNNGG 1 cut(s) 93
BseDI CCNNGG 1 cut(s) 93
BseGI GGATG 1 cut(s) 276
BseMII CTCAG 1 cut(s) 171
BseRI GAGGAG 1 cut(s) 101
BshFI GGCC 3 cut(s) 44, 98, 220
BsiHKCI CYCGRG 1 cut(s) 36
BsmAI GTCTC 2 cut(s) 23, 189
BsmBI CGTCTC 1 cut(s) 23
BsnI GGCC 3 cut(s) 44, 98, 220
BsoBI CYCGRG 1 cut(s) 36
Bsp1286I GDGCHC 1 cut(s) 93
Bsp19I CCATGG 1 cut(s) 93
BspACI CCGC 1 cut(s) 67
BspANI GGCC 3 cut(s) 44, 98, 220
BspCNI CTCAG 1 cut(s) 172
BspLI GGNNCC 1 cut(s) 90
BssECI CCNNGG 1 cut(s) 93
BssT1I CCWWGG 1 cut(s) 93
Bst4CI ACNGT 1 cut(s) 210
BstC8I GCNNGC 1 cut(s) 72
BstDEI CTNAG 2 cut(s) 75, 180
BstDSI CCRYGG 1 cut(s) 93
BstF5I GGATG 1 cut(s) 276
BstMAI GTCTC 2 cut(s) 23, 189
BsuRI GGCC 3 cut(s) 44, 98, 220
BtgI CCRYGG 1 cut(s) 93
BtrI CACGTC 1 cut(s) 17
BtsCI GGATG 1 cut(s) 276
BtsIMutI CAGTG 1 cut(s) 206
Cac8I GCNNGC 1 cut(s) 72
CviAII CATG 4 cut(s) 94, 295, 301, 306
CviJI RGCY 8 cut(s) 44, 70, 91, 98, 128, 178, 220, 247
CviKI_1 RGCY 8 cut(s) 44, 70, 91, 98, 128, 178, 220, 247
DdeI CTNAG 2 cut(s) 75, 180
EaeI YGGCCR 2 cut(s) 96, 218
Eco130I CCWWGG 1 cut(s) 93
Eco24I GRGCYC 1 cut(s) 93
Eco88I CYCGRG 1 cut(s) 36
EcoT14I CCWWGG 1 cut(s) 93
EcoT38I GRGCYC 1 cut(s) 93
ErhI CCWWGG 1 cut(s) 93
Esp3I CGTCTC 1 cut(s) 23
FaeI CATG 4 cut(s) 97, 298, 304, 309
FalI AAGNNNNNCTT 2 cut(s) 231, 263
FatI CATG 4 cut(s) 93, 294, 300, 305
Fnu4HI GCNGC 1 cut(s) 68
FokI GGATG 1 cut(s) 283
FriOI GRGCYC 1 cut(s) 93
Fsp4HI GCNGC 1 cut(s) 68
GluI GCNGC 1 cut(s) 68
HaeIII GGCC 3 cut(s) 44, 98, 220
Hin1II CATG 4 cut(s) 97, 298, 304, 309
HindIII AAGCTT 1 cut(s) 245
HinfI GANTC 3 cut(s) 61, 182, 285
HphI GGTGA 1 cut(s) 184
Hpy188III TCNNGA 3 cut(s) 36, 38, 83
Hpy99I CGWCG 1 cut(s) 52
HpyAV CCTTC 1 cut(s) 33
HpyCH4III ACNGT 1 cut(s) 210
HpyCH4IV ACGT 1 cut(s) 16
HpyCH4V TGCA 1 cut(s) 116
HpyF3I CTNAG 2 cut(s) 75, 180
HpySE526I ACGT 1 cut(s) 16
Hsp92II CATG 4 cut(s) 97, 298, 304, 309
LmnI GCTCC 1 cut(s) 88
LpnPI CCDG 2 cut(s) 173, 192
MaeII ACGT 1 cut(s) 16
MaeIII GTNAC 1 cut(s) 204
MboII GAAGA 3 cut(s) 64, 157, 163
MhlI GDGCHC 1 cut(s) 93
MlsI TGGCCA 2 cut(s) 98, 220
MluCI AATT 2 cut(s) 111, 120
MluNI TGGCCA 2 cut(s) 98, 220
MlyI GAGTC 2 cut(s) 70, 191
MnlI CCTC 3 cut(s) 34, 79, 162
Mox20I TGGCCA 2 cut(s) 98, 220
MscI TGGCCA 2 cut(s) 98, 220
MseI TTAA 1 cut(s) 123
MslI CAYNNNNRTG 1 cut(s) 299
Msp20I TGGCCA 2 cut(s) 98, 220
MspA1I CMGCKG 1 cut(s) 67
NcoI CCATGG 1 cut(s) 93
NlaIII CATG 4 cut(s) 97, 298, 304, 309
NlaIV GGNNCC 1 cut(s) 90
NmuCI GTSAC 1 cut(s) 204
PaeR7I CTCGAG 1 cut(s) 36
PfeI GAWTC 1 cut(s) 285
PkrI GCNGC 1 cut(s) 69
PleI GAGTC 2 cut(s) 69, 190
PpsI GAGTC 2 cut(s) 69, 190
PspN4I GGNNCC 1 cut(s) 90
RseI CAYNNNNRTG 1 cut(s) 299
SaqAI TTAA 1 cut(s) 123
SatI GCNGC 1 cut(s) 68
SchI GAGTC 2 cut(s) 70, 191
SduI GDGCHC 1 cut(s) 93
SetI ASST 5 cut(s) 19, 81, 130, 206, 249
Sfr274I CTCGAG 1 cut(s) 36
SlaI CTCGAG 1 cut(s) 36
SmiMI CAYNNNNRTG 1 cut(s) 299
SmlI CTYRAG 1 cut(s) 36
SmoI CTYRAG 1 cut(s) 36
Sse9I AATT 2 cut(s) 111, 120
SsiI CCGC 1 cut(s) 67
StyI CCWWGG 1 cut(s) 93
TaaI ACNGT 1 cut(s) 210
TaiI ACGT 1 cut(s) 19
TaqI TCGA 1 cut(s) 37
TasI AATT 2 cut(s) 111, 120
TauI GCSGC 1 cut(s) 70
TfiI GAWTC 1 cut(s) 285
Tru1I TTAA 1 cut(s) 123
Tru9I TTAA 1 cut(s) 123
TscAI CASTG 1 cut(s) 213
TseFI GTSAC 1 cut(s) 204
Tsp45I GTSAC 1 cut(s) 204
TspDTI ATGAA 2 cut(s) 164, 266
TspRI CASTG 1 cut(s) 213
XhoI CTCGAG 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.